Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007791.1

Orthogroup ID

OG0003962

Physical Location & Seq

Genomic Coordinates Forward (+)

13582 .. 15318

Gene Structure 1737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007791.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

atgtcgaagatggaaaatgagagctttgatctacatgaagatgttatagtgaagattctttgtcggttgccggtcaagtccttgatccggttcacttgtgtgtcgaaacggaatgacatgcggacacaccgccaggcgggctacggcctcggcgttggaccgcctccagatcgccaccgacgcgccgccacgcgccgcgccaagttagcatcaaaagcttctgaaactgggaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

78

Amino Acids

8.81

Weight (kDa)

10.36

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003962)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318821 RchiOBHm_Chr1g0318831 RchiOBHm_Chr1g0346331 RchiOBHm_Chr4g0409541 RchiOBHm_Chr5g0051691 RchiOBHm_Chr7g0235061 RchiOBHm_Chr7g0235071
rosa_multiflora	Rmu_co8511089.1_g000002 Rmu_sc0001141.1_g000012 Rmu_sc0007791.1_g000003 Rmu_sc0009346.1_g000011 Rmu_sc0014538.1_g000001 Rmu_ssc0000368.1_g000052
rosa_roxburghii	Rroxscaffold_1G00017540 Rroxscaffold_5G00346710 Rroxscaffold_5G00350080 Rroxscaffold_5G00363030
rosa_rugosa	Rorug01G0067000 Rorug01G0211600 Rorug02G0440000 Rorug02G0478600 Rorug03G0012700 Rorug04G0064400 Rorug04G0083800 Rorug05G0214100 Rorug06G0052700 Rorug07G0206200 Rorug07G0268600 Rorug07G0313000
rosa_samantha	Rh4CG156700 Rh5BG128100 Rh5BG361200 Rh7BG438500 Rh7CG485900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	183, 193, 198
AciI	CCGC	6 cut(s)	121, 130, 137, 161, 186, 196
AclWI	GGATC	1 cut(s)	79
AfiI	CCNNNNNNNGG	2 cut(s)	87, 136
AjnI	CCWGG	1 cut(s)	132
AleI	CACNNNNGTG	1 cut(s)	98
AluBI	AGCT	2 cut(s)	24, 218
AluI	AGCT	2 cut(s)	24, 218
AlwI	GGATC	1 cut(s)	79
AoxI	GGCC	1 cut(s)	145
AspLEI	GCGC	3 cut(s)	185, 195, 200
AspS9I	GGNCC	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	158
BccI	CCATC	1 cut(s)	4
BceAI	ACGGC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	134
BglI	GCCNNNNNGGC	1 cut(s)	138
BisI	GCNGC	2 cut(s)	186, 196
BlsI	GCNGC	2 cut(s)	187, 197
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	134
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	1 cut(s)	218
BmuI	ACTGGG	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	148
BsaWI	WCCGGW	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 136
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	148
BseLI	CCNNNNNNNGG	2 cut(s)	87, 136
BseNI	ACTGG	1 cut(s)	232
Bsh1236I	CGCG	3 cut(s)	183, 193, 198
BshFI	GGCC	1 cut(s)	147
BsiSI	CCGG	2 cut(s)	71, 88
BslI	CCNNNNNNNGG	2 cut(s)	87, 136
BsnI	GGCC	1 cut(s)	147
Bsp143I	GATC	3 cut(s)	28, 84, 169
BspACI	CCGC	6 cut(s)	121, 130, 137, 161, 186, 196
BspANI	GGCC	1 cut(s)	147
BspFNI	CGCG	3 cut(s)	183, 193, 198
BspPI	GGATC	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	3 cut(s)	28, 84, 169
Bst2UI	CCWGG	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	139
BstFNI	CGCG	3 cut(s)	183, 193, 198
BstHHI	GCGC	3 cut(s)	185, 195, 200
BstKTI	GATC	3 cut(s)	31, 87, 172
BstMBI	GATC	3 cut(s)	28, 84, 169
BstMWI	GCNNNNNNNGC	4 cut(s)	138, 180, 206, 215
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	132
BstUI	CGCG	3 cut(s)	183, 193, 198
BsuRI	GGCC	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	139
CfoI	GCGC	3 cut(s)	185, 195, 200
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	158
CseI	GACGC	1 cut(s)	189
CviAII	CATG	2 cut(s)	35, 118
CviJI	RGCY	4 cut(s)	24, 141, 147, 218
CviKI_1	RGCY	4 cut(s)	24, 141, 147, 218
DpnI	GATC	3 cut(s)	30, 86, 171
DpnII	GATC	3 cut(s)	28, 84, 169
Eco47I	GGWCC	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	132
FaeI	CATG	2 cut(s)	38, 121
FaiI	YATR	3 cut(s)	36, 47, 119
FatI	CATG	2 cut(s)	34, 117
FauI	CCCGC	1 cut(s)	130
Fnu4HI	GCNGC	2 cut(s)	186, 196
Fsp4HI	GCNGC	2 cut(s)	186, 196
GlaI	GCGC	3 cut(s)	184, 194, 199
GluI	GCNGC	2 cut(s)	186, 196
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	2 cut(s)	71, 88
HgaI	GACGC	1 cut(s)	189
HhaI	GCGC	3 cut(s)	185, 195, 200
Hin1II	CATG	2 cut(s)	38, 121
Hin6I	GCGC	3 cut(s)	183, 193, 198
HinP1I	GCGC	3 cut(s)	183, 193, 198
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	1 cut(s)	55
HpaII	CCGG	2 cut(s)	71, 88
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	1 cut(s)	223
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	1 cut(s)	93
Hpy99I	CGWCG	1 cut(s)	183
HpyF10VI	GCNNNNNNNGC	4 cut(s)	138, 180, 206, 215
Hsp92II	CATG	2 cut(s)	38, 121
HspAI	GCGC	3 cut(s)	183, 193, 198
Kzo9I	GATC	3 cut(s)	28, 84, 169
LpnPI	CCDG	6 cut(s)	84, 101, 119, 146, 180, 213
LweI	GCATC	1 cut(s)	218
MalI	GATC	3 cut(s)	30, 86, 171
MboI	GATC	3 cut(s)	28, 84, 169
MboII	GAAGA	3 cut(s)	19, 50, 64
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	2 cut(s)	158, 174
MslI	CAYNNNNRTG	2 cut(s)	39, 98
MspI	CCGG	2 cut(s)	71, 88
MspR9I	CCNGG	1 cut(s)	134
MteI	GCGCNGCGC	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	134
MvnI	CGCG	3 cut(s)	183, 193, 198
MwoI	GCNNNNNNNGC	4 cut(s)	138, 180, 206, 215
NdeII	GATC	3 cut(s)	28, 84, 169
NlaIII	CATG	2 cut(s)	38, 121
NmeAIII	GCCGAG	1 cut(s)	129
NspI	RCATGY	1 cut(s)	121
OliI	CACNNNNGTG	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	55
PkrI	GCNGC	2 cut(s)	187, 197
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	158
RseI	CAYNNNNRTG	2 cut(s)	39, 98
SatI	GCNGC	2 cut(s)	186, 196
Sau3AI	GATC	3 cut(s)	28, 84, 169
Sau96I	GGNCC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	2 cut(s)	26, 220
SfaNI	GCATC	1 cut(s)	218
SinI	GGWCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	2 cut(s)	39, 98
SsiI	CCGC	6 cut(s)	121, 130, 137, 161, 186, 196
StyD4I	CCNGG	1 cut(s)	132
TaqI	TCGA	2 cut(s)	5, 104
TauI	GCSGC	2 cut(s)	188, 198
TfiI	GAWTC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	51
TspGWI	ACGGA	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	158
XceI	RCATGY	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.