Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003962

Physical Location & Seq

Genomic Coordinates Reverse (-)

52993297 .. 52997746

Gene Structure 4450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32914

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAAGGACAAGGAACCTGATCCTGATTCCAATGTCCGGTTTAAAGCAGGTGCAATAATTGCCAACCCACCAGCATATGGGCACTCTCATGTTGCTGAGGCACTAAAAATACCGATTCATATATTTTTCACAATGCCATGGACGCCTACCAGTGAATTCCCTCATCCTCTATCCCGTGTCAAGCAACATATTGGATATAGAGTGAGTCTCATATCAAACTTAAATATCTTACTGATTTTGATTTGCATTGGTGCTTTTGTTGGCCAGTTCTTTATTTTGCTGTTGAACAATTTTTTCTTTTCTTTCCAGCTATCATATCAAATAGTTTATGCATTAATTTGGCTAGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_28 UDPGT

Protein Analysis

117

Amino Acids

13.3

Weight (kDa)

8.85

Isoelectric Point (pI)

31.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_28	PF03033	13 - 53	1.9e-07	Glycosyltransferase family 28 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003962)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318821 RchiOBHm_Chr1g0318831 RchiOBHm_Chr1g0346331 RchiOBHm_Chr4g0409541 RchiOBHm_Chr5g0051691 RchiOBHm_Chr7g0235061 RchiOBHm_Chr7g0235071
rosa_multiflora	Rmu_co8511089.1_g000002 Rmu_sc0001141.1_g000012 Rmu_sc0007791.1_g000003 Rmu_sc0009346.1_g000011 Rmu_sc0014538.1_g000001 Rmu_ssc0000368.1_g000052
rosa_roxburghii	Rroxscaffold_1G00017540 Rroxscaffold_5G00346710 Rroxscaffold_5G00350080 Rroxscaffold_5G00363030
rosa_rugosa	Rorug01G0067000 Rorug01G0211600 Rorug02G0440000 Rorug02G0478600 Rorug03G0012700 Rorug04G0064400 Rorug04G0083800 Rorug05G0214100 Rorug06G0052700 Rorug07G0206200 Rorug07G0268600 Rorug07G0313000
rosa_samantha	Rh4CG156700 Rh5BG128100 Rh5BG361200 Rh7BG438500 Rh7CG485900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	38
Acc36I	ACCTGC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	77
AclWI	GGATC	1 cut(s)	14
AcoI	YGGCCR	1 cut(s)	262
AcsI	RAATTY	2 cut(s)	155, 348
AcyI	GRCGYC	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	36, 77
AgsI	TTSAA	1 cut(s)	286
AluBI	AGCT	1 cut(s)	310
AluI	AGCT	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	1 cut(s)	14
AoxI	GGCC	1 cut(s)	262
ApoI	RAATTY	2 cut(s)	155, 348
AseI	ATTAAT	1 cut(s)	335
BaeGI	GKGCMC	1 cut(s)	84
BalI	TGGCCA	1 cut(s)	264
BbvCI	CCTCAGC	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	1 cut(s)	344
BfuAI	ACCTGC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	15
BplI	GAGNNNNNCTC	2 cut(s)	192, 224
Bpu10I	CCTNAGC	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	137
BsaWI	WCCGGW	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 77
Bse1I	ACTGG	2 cut(s)	150, 265
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	2 cut(s)	36, 77
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	2 cut(s)	150, 265
BseSI	GKGCMC	1 cut(s)	84
BshFI	GGCC	1 cut(s)	264
BsiSI	CCGG	1 cut(s)	37
BslI	CCNNNNNNNGG	2 cut(s)	36, 77
BsmAI	GTCTC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	19
Bsp19I	CCATGG	1 cut(s)	137
BspANI	GGCC	1 cut(s)	264
BspCNI	CTCAG	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	15
BspMI	ACCTGC	1 cut(s)	38
BspPI	GGATC	1 cut(s)	14
BsrI	ACTGG	2 cut(s)	150, 265
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	1 cut(s)	19
BssNI	GRCGYC	1 cut(s)	143
BssT1I	CCWWGG	1 cut(s)	137
BstACI	GRCGYC	1 cut(s)	143
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 142
BstSLI	GKGCMC	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	264
BtgI	CCRYGG	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	157
BveI	ACCTGC	1 cut(s)	38
CseI	GACGC	1 cut(s)	151
CviAII	CATG	2 cut(s)	89, 138
CviJI	RGCY	3 cut(s)	264, 310, 343
CviKI_1	RGCY	3 cut(s)	264, 310, 343
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
DraI	TTTAAA	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	137
EcoRI	GAATTC	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	137
EcoT22I	ATGCAT	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	2 cut(s)	92, 141
FatI	CATG	2 cut(s)	88, 137
FauNDI	CATATG	1 cut(s)	76
FokI	GGATG	1 cut(s)	150
FspBI	CTAG	1 cut(s)	344
HaeIII	GGCC	1 cut(s)	264
HapII	CCGG	1 cut(s)	37
HgaI	GACGC	1 cut(s)	151
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	2 cut(s)	92, 141
HinfI	GANTC	3 cut(s)	26, 115, 205
HpaII	CCGG	1 cut(s)	37
Hpy188III	TCNNGA	1 cut(s)	23
HpyCH4V	TGCA	3 cut(s)	53, 246, 332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 142
HpyF3I	CTNAG	1 cut(s)	96
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	2 cut(s)	92, 141
Kzo9I	GATC	1 cut(s)	19
LpnPI	CCDG	8 cut(s)	30, 33, 36, 50, 84, 163, 278, 320
MaeI	CTAG	1 cut(s)	344
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	84
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	5 cut(s)	57, 155, 289, 336, 348
MluNI	TGGCCA	1 cut(s)	264
MlyI	GAGTC	1 cut(s)	214
MnlI	CCTC	3 cut(s)	91, 171, 177
Mox20I	TGGCCA	1 cut(s)	264
Mph1103I	ATGCAT	1 cut(s)	334
MscI	TGGCCA	1 cut(s)	264
MseI	TTAA	3 cut(s)	42, 221, 335
MslI	CAYNNNNRTG	1 cut(s)	87
Msp20I	TGGCCA	1 cut(s)	264
MspI	CCGG	1 cut(s)	37
MwoI	GCNNNNNNNGC	2 cut(s)	59, 142
NcoI	CCATGG	1 cut(s)	137
NdeI	CATATG	1 cut(s)	76
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	2 cut(s)	92, 141
NlaIV	GGNNCC	1 cut(s)	15
NsiI	ATGCAT	1 cut(s)	334
PaqCI	CACCTGC	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	26, 115
PflMI	CCANNNNNTGG	1 cut(s)	77
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
PshBI	ATTAAT	1 cut(s)	335
PspN4I	GGNNCC	1 cut(s)	15
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	3 cut(s)	42, 221, 335
Sau3AI	GATC	1 cut(s)	19
SchI	GAGTC	1 cut(s)	214
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	3 cut(s)	19, 52, 312
SmiMI	CAYNNNNRTG	1 cut(s)	87
Sse9I	AATT	5 cut(s)	57, 155, 289, 336, 348
SspMI	CTAG	1 cut(s)	344
StyI	CCWWGG	1 cut(s)	137
TasI	AATT	5 cut(s)	57, 155, 289, 336, 348
TfiI	GAWTC	2 cut(s)	26, 115
Tru1I	TTAA	3 cut(s)	42, 221, 335
Tru9I	TTAA	3 cut(s)	42, 221, 335
TscAI	CASTG	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	17, 107
TspRI	CASTG	1 cut(s)	157
Van91I	CCANNNNNTGG	1 cut(s)	77
VspI	ATTAAT	1 cut(s)	335
XapI	RAATTY	2 cut(s)	155, 348
XspI	CTAG	1 cut(s)	344
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.