Rh5BG361200

Sterol 3-beta-glucosyltransferase UGT80A2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003962
Physical Location & Seq
Forward (+)
56441545 .. 56464775
23231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG361200.1

Sequence Viewer

Length: 570 bp
ATGTTACTCAACTTTGCAGGAAATAGGGTTAGGCTAGCAACTCATGCAAATTTCAAAGATTTTGTCCTTACTGCTGGGTTGGAGTTCTTTCCTTTAGGTGGAGATCCAAAAGTTCTTGCCGAATATATGGTCAAGAATAAAGGTTTCTTGCCATCGGGACCTTCGGAAGTATCTATTCAGCGACAACAAATAAAAGAAAAAATATTTTCTTTACTTCCTGCGTGCAAGGAACCTGATCCTGATTCCAATGTCCGGTTTAAAGCAGGTGCAATAATTGCCAACCCACCAGCATATGGGCACTCTCATGTTGCTGAGGCACTAAAAATACCGATTCATATATTTTTCACAATGCCATGGACGCCTACCAGTGAATTCCCTCATCCTCTATCCCGTGTCAAGCAACATATTGGATATAGAGTGAGTCTCATATCAAACTTAAATATCTTACTGATTTTGATTTGCATTGGTGCTTTTGTTGGCCAGTTCTTTATTTTGCTGTTGAACAATTTTTTCTTTTCTTTCCAGCTATCATATCAAATAGTTTATGCATTAATTTGGCTAGGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_28 UDPGT

Protein Analysis

189

Amino Acids

21.22

Weight (kDa)

9.33

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_28 PF03033 7 - 125 2.3e-17 Glycosyltransferase family 28 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 254
Acc36I ACCTGC 1 cut(s) 254
AccB7I CCANNNNNTGG 1 cut(s) 293
AclWI GGATC 2 cut(s) 98, 230
AcoI YGGCCR 1 cut(s) 478
AcsI RAATTY 3 cut(s) 49, 371, 564
AcyI GRCGYC 1 cut(s) 359
AfiI CCNNNNNNNGG 3 cut(s) 98, 252, 293
AgsI TTSAA 2 cut(s) 55, 502
AluBI AGCT 1 cut(s) 526
AluI AGCT 1 cut(s) 526
Alw26I GTCTC 1 cut(s) 428
AlwI GGATC 2 cut(s) 98, 230
AoxI GGCC 1 cut(s) 478
ApoI RAATTY 3 cut(s) 49, 371, 564
ArsI GACNNNNNNTTYG 4 cut(s) 48, 80, 114, 146
AseI ATTAAT 1 cut(s) 551
AspS9I GGNCC 1 cut(s) 158
AsuNHI GCTAGC 1 cut(s) 34
AvaII GGWCC 1 cut(s) 158
BaeGI GKGCMC 1 cut(s) 300
BalI TGGCCA 1 cut(s) 480
BbvCI CCTCAGC 1 cut(s) 312
BccI CCATC 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 2 cut(s) 35, 560
BfuAI ACCTGC 1 cut(s) 254
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 2 cut(s) 159, 231
BmtI GCTAGC 1 cut(s) 38
BplI GAGNNNNNCTC 2 cut(s) 408, 440
Bpu10I CCTNAGC 1 cut(s) 312
BsaHI GRCGYC 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 353
BsaWI WCCGGW 1 cut(s) 252
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 252, 293
Bse1I ACTGG 2 cut(s) 366, 481
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 1 cut(s) 379
BseLI CCNNNNNNNGG 3 cut(s) 98, 252, 293
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 2 cut(s) 366, 481
BseSI GKGCMC 1 cut(s) 300
BseYI CCCAGC 1 cut(s) 74
BshFI GGCC 1 cut(s) 480
BsiSI CCGG 1 cut(s) 253
BslFI GGGAC 1 cut(s) 171
BslI CCNNNNNNNGG 3 cut(s) 98, 252, 293
BsmAI GTCTC 1 cut(s) 428
BsmFI GGGAC 1 cut(s) 171
BsnI GGCC 1 cut(s) 480
Bsp1286I GDGCHC 1 cut(s) 300
Bsp143I GATC 2 cut(s) 103, 235
Bsp19I CCATGG 1 cut(s) 353
BspANI GGCC 1 cut(s) 480
BspCNI CTCAG 1 cut(s) 304
BspLI GGNNCC 2 cut(s) 159, 231
BspMI ACCTGC 1 cut(s) 254
BspOI GCTAGC 1 cut(s) 38
BspPI GGATC 2 cut(s) 98, 230
BsrI ACTGG 2 cut(s) 366, 481
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 2 cut(s) 103, 235
BssNI GRCGYC 1 cut(s) 359
BssT1I CCWWGG 1 cut(s) 353
BstACI GRCGYC 1 cut(s) 359
BstAPI GCANNNNNTGC 2 cut(s) 44, 275
BstC8I GCNNGC 2 cut(s) 36, 223
BstDEI CTNAG 1 cut(s) 312
BstDSI CCRYGG 1 cut(s) 353
BstF5I GGATG 1 cut(s) 379
BstKTI GATC 2 cut(s) 106, 238
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 2 cut(s) 103, 235
BstMWI GCNNNNNNNGC 3 cut(s) 44, 275, 358
BstSLI GKGCMC 1 cut(s) 300
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BsuRI GGCC 1 cut(s) 480
BtgI CCRYGG 1 cut(s) 353
BtsCI GGATG 1 cut(s) 379
BtsIMutI CAGTG 1 cut(s) 373
BveI ACCTGC 1 cut(s) 254
Cac8I GCNNGC 2 cut(s) 36, 223
Cfr13I GGNCC 1 cut(s) 158
CseI GACGC 1 cut(s) 367
CviAII CATG 3 cut(s) 44, 305, 354
CviJI RGCY 4 cut(s) 34, 480, 526, 559
CviKI_1 RGCY 4 cut(s) 34, 480, 526, 559
DdeI CTNAG 1 cut(s) 312
DpnI GATC 2 cut(s) 105, 237
DpnII GATC 2 cut(s) 103, 235
DraI TTTAAA 1 cut(s) 259
EaeI YGGCCR 1 cut(s) 478
Eco130I CCWWGG 1 cut(s) 353
Eco47I GGWCC 1 cut(s) 158
EcoO109I RGGNCCY 1 cut(s) 158
EcoRI GAATTC 1 cut(s) 371
EcoT14I CCWWGG 1 cut(s) 353
EcoT22I ATGCAT 1 cut(s) 550
ErhI CCWWGG 1 cut(s) 353
FaeI CATG 3 cut(s) 47, 308, 357
FaqI GGGAC 1 cut(s) 171
FatI CATG 3 cut(s) 43, 304, 353
FauNDI CATATG 1 cut(s) 292
FokI GGATG 1 cut(s) 366
FspBI CTAG 2 cut(s) 35, 560
GsaI CCCAGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 480
HapII CCGG 1 cut(s) 253
HgaI GACGC 1 cut(s) 367
Hin1I GRCGYC 1 cut(s) 359
Hin1II CATG 3 cut(s) 47, 308, 357
HinfI GANTC 3 cut(s) 242, 331, 421
HpaII CCGG 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 3 cut(s) 133, 156, 239
HpyAV CCTTC 1 cut(s) 171
HpyCH4V TGCA 6 cut(s) 17, 47, 225, 269, 462, 548
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 275, 358
HpyF3I CTNAG 1 cut(s) 312
Hsp92I GRCGYC 1 cut(s) 359
Hsp92II CATG 3 cut(s) 47, 308, 357
Kzo9I GATC 2 cut(s) 103, 235
MaeI CTAG 2 cut(s) 35, 560
MaeIII GTNAC 1 cut(s) 3
MalI GATC 2 cut(s) 105, 237
MboI GATC 2 cut(s) 103, 235
MflI RGATCY 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 300
MlsI TGGCCA 1 cut(s) 480
MluCI AATT 6 cut(s) 49, 273, 371, 505, 552, 564
MluNI TGGCCA 1 cut(s) 480
MlyI GAGTC 1 cut(s) 430
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 3 cut(s) 307, 387, 393
Mox20I TGGCCA 1 cut(s) 480
Mph1103I ATGCAT 1 cut(s) 550
MscI TGGCCA 1 cut(s) 480
MseI TTAA 3 cut(s) 258, 437, 551
MslI CAYNNNNRTG 1 cut(s) 303
Msp20I TGGCCA 1 cut(s) 480
MspI CCGG 1 cut(s) 253
MwoI GCNNNNNNNGC 3 cut(s) 44, 275, 358
NcoI CCATGG 1 cut(s) 353
NdeI CATATG 1 cut(s) 292
NdeII GATC 2 cut(s) 103, 235
NheI GCTAGC 1 cut(s) 34
NlaIII CATG 3 cut(s) 47, 308, 357
NlaIV GGNNCC 2 cut(s) 159, 231
NsiI ATGCAT 1 cut(s) 550
PaqCI CACCTGC 1 cut(s) 254
PfeI GAWTC 2 cut(s) 242, 331
PflMI CCANNNNNTGG 1 cut(s) 293
PleI GAGTC 1 cut(s) 429
PpsI GAGTC 1 cut(s) 429
PpuMI RGGWCCY 1 cut(s) 158
PshBI ATTAAT 1 cut(s) 551
Psp5II RGGWCCY 1 cut(s) 158
PspFI CCCAGC 1 cut(s) 74
PspN4I GGNNCC 2 cut(s) 159, 231
PspPI GGNCC 1 cut(s) 158
PspPPI RGGWCCY 1 cut(s) 158
PsuI RGATCY 1 cut(s) 103
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 3 cut(s) 258, 437, 551
Sau3AI GATC 2 cut(s) 103, 235
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 1 cut(s) 430
SduI GDGCHC 1 cut(s) 300
SetI ASST 6 cut(s) 100, 145, 163, 235, 268, 528
SinI GGWCC 1 cut(s) 158
SmiMI CAYNNNNRTG 1 cut(s) 303
Sse9I AATT 6 cut(s) 49, 273, 371, 505, 552, 564
SspI AATATT 1 cut(s) 204
SspMI CTAG 2 cut(s) 35, 560
StyI CCWWGG 1 cut(s) 353
TasI AATT 6 cut(s) 49, 273, 371, 505, 552, 564
TfiI GAWTC 2 cut(s) 242, 331
Tru1I TTAA 3 cut(s) 258, 437, 551
Tru9I TTAA 3 cut(s) 258, 437, 551
TscAI CASTG 1 cut(s) 373
TspDTI ATGAA 1 cut(s) 323
TspRI CASTG 1 cut(s) 373
Van91I CCANNNNNTGG 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 158
VspI ATTAAT 1 cut(s) 551
XapI RAATTY 3 cut(s) 49, 371, 564
XspI CTAG 2 cut(s) 35, 560
Zsp2I ATGCAT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.