Rorug07G0206200

Sterol 3-beta-glucosyltransferase UGT80A2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003962
Physical Location & Seq
Forward (+)
18162786 .. 18165139
2354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0206200.1

Sequence Viewer

Length: 960 bp
ATGATGGTTCAAAGAGAAGATTTGGGTCTGAGTCTGAGCTTGAGTGCTTTCCCTCACCAGAATCATAATCCCAACAGCAATAACAATAACAACAACAACCTTCAGCTCAATCTCATGCCCTCTTTGGTCCCAACTTCATCTTCATCTCCTCATTCTGGGTTCAATCCCCAAAAGCCCTCTTGGAATGATGCGTTGGCTTCTTCAGATCGAAACTCGGACACGTGTCGCGCCGCGGCCCGGTCCTTCCTCCGGGGCATCGACGTGAACAGGCTGCCGTCGACGGGCGACTGCGAGGACGTGTCGTCGCCGAACAGCACTGTATCAAGCGTGAGCGGGAAGCGAAGCGAGAGAGAGGCCAATGGCGAAGATCTCGACCTCGAAAGAGACGGCTCACGAGGCATGAGCGACGAAGAGGACGGCGAGACCTCGAGAAAGAAGCTCAGGCTCTCCAAGGACCAGTCGGCCATTCTCGAAGAGAGCTTCAAGGAGCACAACACCCTCAACCCTAAGCAAAAGCTGGCTTTGGCTAAGCAGCTCGGGCTCAGGCCTAGACAGGTGGAAGTCTGGTTTCAGAACAGAAGGGCAAGGACTAAGTTGAAGCAAACGGAGGTGGACTGTGAGTTCCTAAAGAGGTGCTGCGAGAATCTGACGGAGGAGAACCGGCGGTTGCAGAAAGAAGTTCAGGAGCTGAGAGCACTGAAACTCTCCCCACAGTTCTACATGCAAATGACCCCACCAACCACCCTCACCATGTGCCCCTCGTGTGAGCGTGTCGCGGTCCCACCAAACTCCACGTCACCATCCGCCACCATCGATCCCCGGGCACACCATCACCACCACCCGATGGTGCCCGTCCACCATCCGCGGGCCATCCCGGTCGCCGGCCCGTGGGCCGCCGCCATCCCGCAACAACAACCACAACAACGGCCTTTTGACGCCTTCCGCGCCTCGCGGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_28 UDPGT

Protein Analysis

319

Amino Acids

35.78

Weight (kDa)

8.7

Isoelectric Point (pI)

62.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HD-ZIP_N PF04618 2 - 118 1.5e-28 HD-ZIP protein N terminus
Homeodomain PF00046 144 - 198 4.5e-16 Homeodomain
HALZ PF02183 200 - 234 2.5e-11 Homeobox associated leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 847
AccB7I CCANNNNNTGG 1 cut(s) 844
AccBSI CCGCTC 1 cut(s) 333
AccI GTMKAC 1 cut(s) 278
AccII CGCG 6 cut(s) 228, 233, 776, 865, 945, 952
AclWI GGATC 1 cut(s) 809
AcoI YGGCCR 2 cut(s) 462, 953
AcuI CTGAAG 2 cut(s) 86, 186
AcvI CACGTG 1 cut(s) 222
AcyI GRCGYC 1 cut(s) 936
AdeI CACNNNGTG 1 cut(s) 753
AfiI CCNNNNNNNGG 8 cut(s) 155, 237, 249, 281, 844, 865, 881, 888
AflIII ACRYGT 3 cut(s) 219, 221, 297
AgsI TTSAA 4 cut(s) 11, 163, 484, 598
AhdI GACNNNNNGTC 1 cut(s) 301
AjiI CACGTC 3 cut(s) 262, 298, 795
AjuI GAANNNNNNNTTGG 4 cut(s) 124, 156, 176, 208
AloI GAACNNNNNNTCC 2 cut(s) 605, 637
AluBI AGCT 7 cut(s) 39, 106, 439, 480, 517, 535, 688
AluI AGCT 7 cut(s) 39, 106, 439, 480, 517, 535, 688
Alw21I GWGCWC 2 cut(s) 492, 697
Alw26I GTCTC 2 cut(s) 378, 416
AlwI GGATC 1 cut(s) 809
AlwNI CAGNNNCTG 1 cut(s) 688
Ama87I CYCGRG 3 cut(s) 427, 536, 819
AoxI GGCC 9 cut(s) 234, 354, 462, 545, 867, 883, 891, 926, 953
ApeKI GCWGC 3 cut(s) 271, 532, 636
ArsI GACNNNNNNTTYG 2 cut(s) 779, 811
AspLEI GCGC 2 cut(s) 230, 947
AspS9I GGNCC 8 cut(s) 127, 235, 240, 454, 778, 867, 884, 891
AsuC2I CCSGG 5 cut(s) 238, 251, 820, 821, 875
AsuHPI GGTGA 4 cut(s) 47, 739, 789, 824
AvaI CYCGRG 3 cut(s) 427, 536, 819
AvaII GGWCC 4 cut(s) 127, 240, 454, 778
BaeGI GKGCMC 3 cut(s) 758, 826, 852
BanI GGYRCC 1 cut(s) 847
BanII GRGCYC 1 cut(s) 543
BauI CACGAG 2 cut(s) 393, 760
BbrPI CACGTG 1 cut(s) 222
Bbv12I GWGCWC 2 cut(s) 492, 697
BbvI GCAGC 3 cut(s) 258, 544, 623
BccI CCATC 7 cut(s) 808, 818, 837, 838, 867, 878, 908
BceAI ACGGC 5 cut(s) 259, 403, 433, 940, 941
BcnI CCSGG 5 cut(s) 238, 251, 820, 821, 875
BcoDI GTCTC 2 cut(s) 378, 416
BfaI CTAG 1 cut(s) 549
BglII AGATCT 1 cut(s) 367
BisI GCNGC 8 cut(s) 231, 234, 272, 533, 637, 894, 897, 953
BlpI GCTNAGC 1 cut(s) 528
BlsI GCNGC 8 cut(s) 232, 235, 273, 534, 638, 895, 898, 954
Bme1390I CCNGG 5 cut(s) 238, 251, 820, 821, 875
Bme18I GGWCC 4 cut(s) 127, 240, 454, 778
BmeRI GACNNNNNGTC 1 cut(s) 301
BmeT110I CYCGRG 3 cut(s) 427, 536, 819
BmgBI CACGTC 3 cut(s) 262, 298, 795
BmgT120I GGNCC 8 cut(s) 127, 235, 240, 454, 778, 867, 884, 891
BmiI GGNNCC 3 cut(s) 129, 780, 849
BmrFI CCNGG 5 cut(s) 238, 251, 820, 821, 875
BmsI GCATC 2 cut(s) 178, 264
BoxI GACNNNNGTC 1 cut(s) 222
Bpu10I CCTNAGC 3 cut(s) 440, 507, 542
Bpu1102I GCTNAGC 1 cut(s) 528
BpuEI CTTGAG 1 cut(s) 61
BpuMI CCSGG 5 cut(s) 238, 251, 820, 821, 875
Bsa29I ATCGAT 1 cut(s) 813
BsaAI YACGTR 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 936
BsaI GGTCTC 1 cut(s) 416
BsaJI CCNNGG 7 cut(s) 231, 250, 450, 818, 819, 863, 887
Bsc4I CCNNNNNNNGG 8 cut(s) 155, 237, 249, 281, 844, 865, 881, 888
Bse118I RCCGGY 2 cut(s) 660, 881
Bse1I ACTGG 1 cut(s) 457
BseCI ATCGAT 1 cut(s) 813
BseDI CCNNGG 7 cut(s) 231, 250, 450, 818, 819, 863, 887
BseGI GGATG 4 cut(s) 800, 859, 870, 900
BseLI CCNNNNNNNGG 8 cut(s) 155, 237, 249, 281, 844, 865, 881, 888
BseMII CTCAG 5 cut(s) 20, 26, 454, 556, 680
BseNI ACTGG 1 cut(s) 457
BseRI GAGGAG 2 cut(s) 138, 668
BseSI GKGCMC 3 cut(s) 758, 826, 852
BseX3I CGGCCG 1 cut(s) 953
BseXI GCAGC 3 cut(s) 258, 544, 623
Bsh1236I CGCG 6 cut(s) 228, 233, 776, 865, 945, 952
Bsh1285I CGRYCG 2 cut(s) 879, 956
BshFI GGCC 9 cut(s) 236, 356, 464, 547, 869, 885, 893, 928, 955
BshNI GGYRCC 1 cut(s) 847
BshVI ATCGAT 1 cut(s) 813
BsiEI CGRYCG 2 cut(s) 879, 956
BsiHKAI GWGCWC 2 cut(s) 492, 697
BsiHKCI CYCGRG 3 cut(s) 427, 536, 819
BsiSI CCGG 6 cut(s) 238, 250, 661, 820, 875, 882
BslFI GGGAC 2 cut(s) 113, 764
BslI CCNNNNNNNGG 8 cut(s) 155, 237, 249, 281, 844, 865, 881, 888
BsmAI GTCTC 2 cut(s) 378, 416
BsmBI CGTCTC 1 cut(s) 378
BsmFI GGGAC 2 cut(s) 113, 764
BsnI GGCC 9 cut(s) 236, 356, 464, 547, 869, 885, 893, 928, 955
Bso31I GGTCTC 1 cut(s) 416
BsoBI CYCGRG 3 cut(s) 427, 536, 819
Bsp1286I GDGCHC 6 cut(s) 492, 543, 697, 758, 826, 852
Bsp143I GATC 3 cut(s) 205, 367, 814
Bsp1720I GCTNAGC 1 cut(s) 528
BspANI GGCC 9 cut(s) 236, 356, 464, 547, 869, 885, 893, 928, 955
BspCNI CTCAG 5 cut(s) 21, 27, 453, 555, 681
BspDI ATCGAT 1 cut(s) 813
BspFNI CGCG 6 cut(s) 228, 233, 776, 865, 945, 952
BspLI GGNNCC 3 cut(s) 129, 780, 849
BspPI GGATC 1 cut(s) 809
BspT107I GGYRCC 1 cut(s) 847
BspTNI GGTCTC 1 cut(s) 416
BsrBI CCGCTC 1 cut(s) 333
BsrFI RCCGGY 2 cut(s) 660, 881
BsrI ACTGG 1 cut(s) 457
BssAI RCCGGY 2 cut(s) 660, 881
BssECI CCNNGG 7 cut(s) 231, 250, 450, 818, 819, 863, 887
BssMI GATC 3 cut(s) 205, 367, 814
BssNI GRCGYC 1 cut(s) 936
BssSI CACGAG 2 cut(s) 393, 760
BssT1I CCWWGG 1 cut(s) 450
Bst2BI CACGAG 2 cut(s) 393, 760
Bst4CI ACNGT 3 cut(s) 319, 617, 714
Bst6I CTCTTC 2 cut(s) 405, 468
BstACI GRCGYC 1 cut(s) 936
BstBAI YACGTR 1 cut(s) 222
BstC8I GCNNGC 3 cut(s) 519, 867, 883
BstDEI CTNAG 8 cut(s) 29, 35, 440, 507, 528, 542, 591, 689
BstDSI CCRYGG 3 cut(s) 231, 863, 887
BstF5I GGATG 4 cut(s) 800, 859, 870, 900
BstFNI CGCG 6 cut(s) 228, 233, 776, 865, 945, 952
BstHHI GCGC 2 cut(s) 230, 947
BstKTI GATC 3 cut(s) 208, 370, 817
BstMAI GTCTC 2 cut(s) 378, 416
BstMBI GATC 3 cut(s) 205, 367, 814
BstMCI CGRYCG 2 cut(s) 879, 956
BstMWI GCNNNNNNNGC 3 cut(s) 396, 538, 944
BstNSI RCATGY 1 cut(s) 724
BstPAI GACNNNNGTC 1 cut(s) 222
BstSCI CCNGG 5 cut(s) 236, 249, 818, 819, 873
BstSLI GKGCMC 3 cut(s) 758, 826, 852
BstUI CGCG 6 cut(s) 228, 233, 776, 865, 945, 952
BstV1I GCAGC 3 cut(s) 258, 544, 623
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BstZI CGGCCG 1 cut(s) 953
Bsu15I ATCGAT 1 cut(s) 813
BsuRI GGCC 9 cut(s) 236, 356, 464, 547, 869, 885, 893, 928, 955
BsuTUI ATCGAT 1 cut(s) 813
BtgI CCRYGG 3 cut(s) 231, 863, 887
BtrI CACGTC 3 cut(s) 262, 298, 795
BtsCI GGATG 4 cut(s) 800, 859, 870, 900
BtsIMutI CAGTG 2 cut(s) 315, 695
Cac8I GCNNGC 3 cut(s) 519, 867, 883
CaiI CAGNNNCTG 1 cut(s) 688
CfoI GCGC 2 cut(s) 230, 947
Cfr10I RCCGGY 2 cut(s) 660, 881
Cfr13I GGNCC 8 cut(s) 127, 235, 240, 454, 778, 867, 884, 891
Cfr42I CCGCGG 2 cut(s) 234, 866
Cfr9I CCCGGG 1 cut(s) 819
ClaI ATCGAT 1 cut(s) 813
CseI GACGC 1 cut(s) 944
CviAII CATG 4 cut(s) 115, 400, 721, 751
DdeI CTNAG 8 cut(s) 29, 35, 440, 507, 528, 542, 591, 689
DpnI GATC 3 cut(s) 207, 369, 816
DpnII GATC 3 cut(s) 205, 367, 814
DraIII CACNNNGTG 1 cut(s) 753
DriI GACNNNNNGTC 1 cut(s) 301
EaeI YGGCCR 2 cut(s) 462, 953
EagI CGGCCG 1 cut(s) 953
Eam1104I CTCTTC 2 cut(s) 405, 468
Eam1105I GACNNNNNGTC 1 cut(s) 301
EarI CTCTTC 2 cut(s) 405, 468
EciI GGCGGA 1 cut(s) 793
EclXI CGGCCG 1 cut(s) 953
Eco130I CCWWGG 1 cut(s) 450
Eco147I AGGCCT 1 cut(s) 547
Eco24I GRGCYC 1 cut(s) 543
Eco31I GGTCTC 1 cut(s) 416
Eco47I GGWCC 4 cut(s) 127, 240, 454, 778
Eco52I CGGCCG 1 cut(s) 953
Eco57I CTGAAG 2 cut(s) 86, 186
Eco72I CACGTG 1 cut(s) 222
Eco88I CYCGRG 3 cut(s) 427, 536, 819
EcoT14I CCWWGG 1 cut(s) 450
EcoT38I GRGCYC 1 cut(s) 543
ErhI CCWWGG 1 cut(s) 450
Esp3I CGTCTC 1 cut(s) 378
FaeI CATG 4 cut(s) 118, 403, 724, 754
FaiI YATR 5 cut(s) 66, 116, 401, 722, 752
FaqI GGGAC 2 cut(s) 113, 764
FatI CATG 4 cut(s) 114, 399, 720, 750
FauI CCCGC 3 cut(s) 326, 858, 912
FblI GTMKAC 1 cut(s) 278
Fnu4HI GCNGC 8 cut(s) 231, 234, 272, 533, 637, 894, 897, 953
FokI GGATG 4 cut(s) 787, 846, 857, 887
FriOI GRGCYC 1 cut(s) 543
Fsp4HI GCNGC 8 cut(s) 231, 234, 272, 533, 637, 894, 897, 953
FspBI CTAG 1 cut(s) 549
GlaI GCGC 2 cut(s) 229, 946
GluI GCNGC 8 cut(s) 231, 234, 272, 533, 637, 894, 897, 953
HaeIII GGCC 9 cut(s) 236, 356, 464, 547, 869, 885, 893, 928, 955
HapII CCGG 6 cut(s) 238, 250, 661, 820, 875, 882
HgaI GACGC 1 cut(s) 944
HhaI GCGC 2 cut(s) 230, 947
Hin1I GRCGYC 1 cut(s) 936
Hin1II CATG 4 cut(s) 118, 403, 724, 754
Hin6I GCGC 2 cut(s) 228, 945
HinP1I GCGC 2 cut(s) 228, 945
HincII GTYRAC 1 cut(s) 279
HindII GTYRAC 1 cut(s) 279
HinfI GANTC 3 cut(s) 31, 61, 643
HpaII CCGG 6 cut(s) 238, 250, 661, 820, 875, 882
HphI GGTGA 4 cut(s) 47, 739, 789, 824
Hpy166II GTNNAC 4 cut(s) 265, 279, 613, 856
Hpy188I TCNGA 6 cut(s) 30, 36, 205, 217, 573, 648
Hpy188III TCNNGA 5 cut(s) 371, 393, 429, 470, 683
Hpy8I GTNNAC 4 cut(s) 265, 279, 613, 856
Hpy99I CGWCG 5 cut(s) 263, 280, 283, 307, 410
HpyAV CCTTC 4 cut(s) 110, 253, 573, 949
HpyCH4III ACNGT 3 cut(s) 319, 617, 714
HpyCH4IV ACGT 4 cut(s) 221, 261, 297, 794
HpyCH4V TGCA 2 cut(s) 670, 724
HpyF10VI GCNNNNNNNGC 3 cut(s) 396, 538, 944
HpyF3I CTNAG 8 cut(s) 29, 35, 440, 507, 528, 542, 591, 689
HpySE526I ACGT 4 cut(s) 221, 261, 297, 794
Hsp92I GRCGYC 1 cut(s) 936
Hsp92II CATG 4 cut(s) 118, 403, 724, 754
HspAI GCGC 2 cut(s) 228, 945
KroI GCCGGC 1 cut(s) 881
KroNI GCCGGC 1 cut(s) 883
KspI CCGCGG 2 cut(s) 234, 866
Kzo9I GATC 3 cut(s) 205, 367, 814
LmnI GCTCC 2 cut(s) 487, 685
Lsp1109I GCAGC 3 cut(s) 258, 544, 623
LweI GCATC 2 cut(s) 178, 264
MaeI CTAG 1 cut(s) 549
MaeII ACGT 4 cut(s) 221, 261, 297, 794
MaeIII GTNAC 1 cut(s) 795
MalI GATC 3 cut(s) 207, 369, 816
MbiI CCGCTC 1 cut(s) 333
MboI GATC 3 cut(s) 205, 367, 814
MboII GAAGA 6 cut(s) 29, 132, 192, 377, 422, 485
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 6 cut(s) 492, 543, 697, 758, 826, 852
MlyI GAGTC 1 cut(s) 40
MroNI GCCGGC 1 cut(s) 881
MslI CAYNNNNRTG 2 cut(s) 260, 725
MspA1I CMGCKG 2 cut(s) 233, 865
MspI CCGG 6 cut(s) 238, 250, 661, 820, 875, 882
MspR9I CCNGG 5 cut(s) 238, 251, 820, 821, 875
MvnI CGCG 6 cut(s) 228, 233, 776, 865, 945, 952
MwoI GCNNNNNNNGC 3 cut(s) 396, 538, 944
NaeI GCCGGC 1 cut(s) 883
NciI CCSGG 5 cut(s) 238, 251, 820, 821, 875
NdeII GATC 3 cut(s) 205, 367, 814
NgoMIV GCCGGC 1 cut(s) 881
NlaIII CATG 4 cut(s) 118, 403, 724, 754
NlaIV GGNNCC 3 cut(s) 129, 780, 849
NmuCI GTSAC 1 cut(s) 795
NspI RCATGY 1 cut(s) 724
PaeR7I CTCGAG 1 cut(s) 427
PceI AGGCCT 1 cut(s) 547
PdiI GCCGGC 1 cut(s) 883
PfeI GAWTC 2 cut(s) 61, 643
PflMI CCANNNNNTGG 1 cut(s) 844
PkrI GCNGC 8 cut(s) 232, 235, 273, 534, 638, 895, 898, 954
PleI GAGTC 1 cut(s) 39
PmaCI CACGTG 1 cut(s) 222
PmlI CACGTG 1 cut(s) 222
PpsI GAGTC 1 cut(s) 39
Ppu21I YACGTR 1 cut(s) 222
PshAI GACNNNNGTC 1 cut(s) 222
PspCI CACGTG 1 cut(s) 222
PspN4I GGNNCC 3 cut(s) 129, 780, 849
PspPI GGNCC 8 cut(s) 127, 235, 240, 454, 778, 867, 884, 891
PstNI CAGNNNCTG 1 cut(s) 688
PsuI RGATCY 1 cut(s) 367
RseI CAYNNNNRTG 2 cut(s) 260, 725
SacII CCGCGG 2 cut(s) 234, 866
SalI GTCGAC 1 cut(s) 277
SatI GCNGC 8 cut(s) 231, 234, 272, 533, 637, 894, 897, 953
Sau3AI GATC 3 cut(s) 205, 367, 814
Sau96I GGNCC 8 cut(s) 127, 235, 240, 454, 778, 867, 884, 891
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 5 cut(s) 238, 251, 820, 821, 875
SduI GDGCHC 6 cut(s) 492, 543, 697, 758, 826, 852
SfaNI GCATC 2 cut(s) 178, 264
Sfr274I CTCGAG 1 cut(s) 427
Sfr303I CCGCGG 2 cut(s) 234, 866
SgrBI CCGCGG 2 cut(s) 234, 866
SgrDI CGTCGACG 1 cut(s) 277
SinI GGWCC 4 cut(s) 127, 240, 454, 778
SlaI CTCGAG 1 cut(s) 427
SmaI CCCGGG 1 cut(s) 821
SmiMI CAYNNNNRTG 2 cut(s) 260, 725
SmlI CTYRAG 2 cut(s) 40, 427
SmoI CTYRAG 2 cut(s) 40, 427
SseBI AGGCCT 1 cut(s) 547
SspMI CTAG 1 cut(s) 549
StuI AGGCCT 1 cut(s) 547
StyD4I CCNGG 5 cut(s) 236, 249, 818, 819, 873
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 3 cut(s) 319, 617, 714
TaiI ACGT 4 cut(s) 224, 264, 300, 797
TaqI TCGA 8 cut(s) 208, 258, 278, 372, 378, 428, 471, 813
TauI GCSGC 5 cut(s) 233, 236, 896, 899, 955
TfiI GAWTC 2 cut(s) 61, 643
TscAI CASTG 2 cut(s) 322, 702
TseFI GTSAC 1 cut(s) 795
TseI GCWGC 3 cut(s) 271, 532, 636
Tsp45I GTSAC 1 cut(s) 795
TspDTI ATGAA 2 cut(s) 126, 132
TspGWI ACGGA 2 cut(s) 620, 665
TspMI CCCGGG 1 cut(s) 819
TspRI CASTG 2 cut(s) 322, 702
Van91I CCANNNNNTGG 1 cut(s) 844
VpaK11BI GGWCC 4 cut(s) 127, 240, 454, 778
XceI RCATGY 1 cut(s) 724
XhoI CTCGAG 1 cut(s) 427
XmaI CCCGGG 1 cut(s) 819
XmiI GTMKAC 1 cut(s) 278
XspI CTAG 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.