Rroxscaffold_5G00363030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0003962
Physical Location & Seq
Forward (+)
44067898 .. 44079518
11621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00363030.1

Sequence Viewer

Length: 432 bp
ATGGCATTTGCAAGCATAATTAGCTATAATGAGCCACGCTCATGCTACCGCCAACTGCGCGACTCCGGCCAAAGGAGTAACCTACGGGAGCACAGCCAGCGGGCTATCGCCCGAGCCCCGCTTGCCCCTAGGTCGCCGCCGACTCATCGCCGTGCACCGCGCCAAGACGCATCGAAGCTCCAGAAGCTGGGGACCGAAGCATACCAGCCCCACATTGAAAACATGAAGAAGATCGGCCCCTTCTTCACCTATAAAAGGACTAACCTATGGGAGCACGGCCAAGCGAGCTATCGGCCGAGCCCCGGCTTGCCCCAAGGTCCTTGCGGACGCCCCGCCACCCGCCGCACCAAGACAGCATTAGAAGCTGGGGACCGAAGCATACCGGTCCCACATCGAAAACATGAAGAAGATCGGCCCCTTCTTCACCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.35

Weight (kDa)

10.72

Isoelectric Point (pI)

76.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 187
AccII CGCG 2 cut(s) 60, 160
AciI CCGC 9 cut(s) 49, 100, 119, 137, 158, 324, 333, 340, 343
AcoI YGGCCR 3 cut(s) 67, 277, 293
AcyI GRCGYC 1 cut(s) 328
AfiI CCNNNNNNNGG 4 cut(s) 72, 187, 255, 302
AgeI ACCGGT 1 cut(s) 382
AgsI TTSAA 1 cut(s) 218
AluBI AGCT 5 cut(s) 24, 178, 187, 288, 365
AluI AGCT 5 cut(s) 24, 178, 187, 288, 365
Alw21I GWGCWC 3 cut(s) 93, 157, 276
Alw44I GTGCAC 1 cut(s) 153
AlwNI CAGNNNCTG 1 cut(s) 187
Ama87I CYCGRG 1 cut(s) 111
AoxI GGCC 5 cut(s) 67, 235, 277, 293, 413
ApaLI GTGCAC 1 cut(s) 153
AsiGI ACCGGT 1 cut(s) 382
AspA2I CCTAGG 1 cut(s) 128
AspLEI GCGC 2 cut(s) 60, 162
AspS9I GGNCC 6 cut(s) 192, 236, 317, 370, 385, 414
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 2 cut(s) 238, 416
AvaI CYCGRG 1 cut(s) 111
AvaII GGWCC 4 cut(s) 192, 317, 370, 385
AvrII CCTAGG 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 157
BanII GRGCYC 2 cut(s) 118, 302
Bbv12I GWGCWC 3 cut(s) 93, 157, 276
BceAI ACGGC 2 cut(s) 135, 292
BcnI CCSGG 1 cut(s) 303
BfaI CTAG 1 cut(s) 129
BisI GCNGC 2 cut(s) 137, 343
BlnI CCTAGG 1 cut(s) 128
BlsI GCNGC 2 cut(s) 138, 344
Bme1390I CCNGG 1 cut(s) 303
Bme18I GGWCC 4 cut(s) 192, 317, 370, 385
BmeT110I CYCGRG 1 cut(s) 111
BmgT120I GGNCC 6 cut(s) 192, 236, 317, 370, 385, 414
BmiI GGNNCC 5 cut(s) 193, 238, 371, 387, 416
BmrFI CCNGG 1 cut(s) 303
BmsI GCATC 1 cut(s) 179
BplI GAGNNNNNCTC 2 cut(s) 23, 55
BpmI CTGGAG 1 cut(s) 164
BpuMI CCSGG 1 cut(s) 303
BsaHI GRCGYC 1 cut(s) 328
BsaJI CCNNGG 3 cut(s) 128, 301, 313
BsaWI WCCGGW 1 cut(s) 382
Bsc4I CCNNNNNNNGG 4 cut(s) 72, 187, 255, 302
Bse118I RCCGGY 1 cut(s) 382
BseDI CCNNGG 3 cut(s) 128, 301, 313
BseLI CCNNNNNNNGG 4 cut(s) 72, 187, 255, 302
BseSI GKGCMC 1 cut(s) 157
BseX3I CGGCCG 1 cut(s) 293
BseYI CCCAGC 2 cut(s) 187, 365
Bsh1236I CGCG 2 cut(s) 60, 160
Bsh1285I CGRYCG 1 cut(s) 296
BshFI GGCC 5 cut(s) 69, 237, 279, 295, 415
BshTI ACCGGT 1 cut(s) 382
BsiEI CGRYCG 1 cut(s) 296
BsiHKAI GWGCWC 3 cut(s) 93, 157, 276
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 3 cut(s) 66, 303, 383
BslFI GGGAC 3 cut(s) 205, 371, 383
BslI CCNNNNNNNGG 4 cut(s) 72, 187, 255, 302
BsmFI GGGAC 3 cut(s) 205, 371, 383
BsnI GGCC 5 cut(s) 69, 237, 279, 295, 415
BsoBI CYCGRG 1 cut(s) 111
Bsp1286I GDGCHC 5 cut(s) 93, 118, 157, 276, 302
Bsp143I GATC 2 cut(s) 231, 409
BspACI CCGC 9 cut(s) 49, 100, 119, 137, 158, 324, 333, 340, 343
BspANI GGCC 5 cut(s) 69, 237, 279, 295, 415
BspFNI CGCG 2 cut(s) 60, 160
BspLI GGNNCC 5 cut(s) 193, 238, 371, 387, 416
BsrFI RCCGGY 1 cut(s) 382
BssAI RCCGGY 1 cut(s) 382
BssECI CCNNGG 3 cut(s) 128, 301, 313
BssMI GATC 2 cut(s) 231, 409
BssNI GRCGYC 1 cut(s) 328
BssT1I CCWWGG 2 cut(s) 128, 313
BstACI GRCGYC 1 cut(s) 328
BstC8I GCNNGC 6 cut(s) 13, 98, 102, 123, 286, 308
BstENI CCTNNNNNAGG 1 cut(s) 253
BstFNI CGCG 2 cut(s) 60, 160
BstHHI GCGC 2 cut(s) 60, 162
BstKTI GATC 2 cut(s) 234, 412
BstMBI GATC 2 cut(s) 231, 409
BstMCI CGRYCG 1 cut(s) 296
BstMWI GCNNNNNNNGC 8 cut(s) 21, 57, 66, 97, 122, 184, 285, 362
BstSCI CCNGG 1 cut(s) 301
BstSLI GKGCMC 1 cut(s) 157
BstUI CGCG 2 cut(s) 60, 160
BstZI CGGCCG 1 cut(s) 293
BsuRI GGCC 5 cut(s) 69, 237, 279, 295, 415
BtgZI GCGATG 1 cut(s) 131
Cac8I GCNNGC 6 cut(s) 13, 98, 102, 123, 286, 308
CaiI CAGNNNCTG 1 cut(s) 187
CfoI GCGC 2 cut(s) 60, 162
Cfr10I RCCGGY 1 cut(s) 382
Cfr13I GGNCC 6 cut(s) 192, 236, 317, 370, 385, 414
CseI GACGC 2 cut(s) 176, 336
CspAI ACCGGT 1 cut(s) 382
CviAII CATG 3 cut(s) 42, 223, 401
DpnI GATC 2 cut(s) 233, 411
DpnII GATC 2 cut(s) 231, 409
EaeI YGGCCR 3 cut(s) 67, 277, 293
EagI CGGCCG 1 cut(s) 293
EclXI CGGCCG 1 cut(s) 293
Eco130I CCWWGG 2 cut(s) 128, 313
Eco24I GRGCYC 2 cut(s) 118, 302
Eco47I GGWCC 4 cut(s) 192, 317, 370, 385
Eco52I CGGCCG 1 cut(s) 293
Eco88I CYCGRG 1 cut(s) 111
EcoNI CCTNNNNNAGG 1 cut(s) 253
EcoO109I RGGNCCY 1 cut(s) 317
EcoT14I CCWWGG 2 cut(s) 128, 313
EcoT38I GRGCYC 2 cut(s) 118, 302
ErhI CCWWGG 2 cut(s) 128, 313
FaeI CATG 3 cut(s) 45, 226, 404
FaqI GGGAC 3 cut(s) 205, 371, 383
FatI CATG 3 cut(s) 41, 222, 400
FauI CCCGC 4 cut(s) 93, 126, 340, 347
Fnu4HI GCNGC 2 cut(s) 137, 343
FriOI GRGCYC 2 cut(s) 118, 302
Fsp4HI GCNGC 2 cut(s) 137, 343
FspBI CTAG 1 cut(s) 129
GlaI GCGC 2 cut(s) 59, 161
GluI GCNGC 2 cut(s) 137, 343
GsaI CCCAGC 2 cut(s) 191, 369
GsuI CTGGAG 1 cut(s) 164
HaeIII GGCC 5 cut(s) 69, 237, 279, 295, 415
HapII CCGG 3 cut(s) 66, 303, 383
HgaI GACGC 2 cut(s) 176, 336
HhaI GCGC 2 cut(s) 60, 162
Hin1I GRCGYC 1 cut(s) 328
Hin1II CATG 3 cut(s) 45, 226, 404
Hin6I GCGC 2 cut(s) 58, 160
HinP1I GCGC 2 cut(s) 58, 160
HinfI GANTC 2 cut(s) 62, 142
HpaII CCGG 3 cut(s) 66, 303, 383
HphI GGTGA 2 cut(s) 238, 416
Hpy166II GTNNAC 1 cut(s) 155
Hpy188III TCNNGA 1 cut(s) 181
Hpy8I GTNNAC 1 cut(s) 155
HpyAV CCTTC 2 cut(s) 250, 428
HpyCH4V TGCA 2 cut(s) 11, 155
HpyF10VI GCNNNNNNNGC 8 cut(s) 21, 57, 66, 97, 122, 184, 285, 362
Hsp92I GRCGYC 1 cut(s) 328
Hsp92II CATG 3 cut(s) 45, 226, 404
HspAI GCGC 2 cut(s) 58, 160
Kzo9I GATC 2 cut(s) 231, 409
LmnI GCTCC 3 cut(s) 88, 183, 271
LpnPI CCDG 8 cut(s) 79, 110, 173, 194, 218, 316, 351, 396
LweI GCATC 1 cut(s) 179
MaeI CTAG 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 77
MalI GATC 2 cut(s) 233, 411
MboI GATC 2 cut(s) 231, 409
MboII GAAGA 6 cut(s) 235, 238, 241, 413, 416, 419
MhlI GDGCHC 5 cut(s) 93, 118, 157, 276, 302
MluCI AATT 1 cut(s) 18
MlyI GAGTC 2 cut(s) 56, 136
MslI CAYNNNNRTG 2 cut(s) 40, 150
MspA1I CMGCKG 1 cut(s) 100
MspI CCGG 3 cut(s) 66, 303, 383
MspR9I CCNGG 1 cut(s) 303
MvnI CGCG 2 cut(s) 60, 160
MwoI GCNNNNNNNGC 8 cut(s) 21, 57, 66, 97, 122, 184, 285, 362
NciI CCSGG 1 cut(s) 303
NdeII GATC 2 cut(s) 231, 409
NlaIII CATG 3 cut(s) 45, 226, 404
NlaIV GGNNCC 5 cut(s) 193, 238, 371, 387, 416
NmeAIII GCCGAG 1 cut(s) 321
PflMI CCANNNNNTGG 1 cut(s) 187
PinAI ACCGGT 1 cut(s) 382
PkrI GCNGC 2 cut(s) 138, 344
PleI GAGTC 2 cut(s) 56, 136
PpsI GAGTC 2 cut(s) 56, 136
PpuMI RGGWCCY 1 cut(s) 317
Psp5II RGGWCCY 1 cut(s) 317
PspFI CCCAGC 2 cut(s) 187, 365
PspN4I GGNNCC 5 cut(s) 193, 238, 371, 387, 416
PspPI GGNCC 6 cut(s) 192, 236, 317, 370, 385, 414
PspPPI RGGWCCY 1 cut(s) 317
PstNI CAGNNNCTG 1 cut(s) 187
RseI CAYNNNNRTG 2 cut(s) 40, 150
SatI GCNGC 2 cut(s) 137, 343
Sau3AI GATC 2 cut(s) 231, 409
Sau96I GGNCC 6 cut(s) 192, 236, 317, 370, 385, 414
SchI GAGTC 2 cut(s) 56, 136
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 5 cut(s) 93, 118, 157, 276, 302
SfaNI GCATC 1 cut(s) 179
SinI GGWCC 4 cut(s) 192, 317, 370, 385
SmiMI CAYNNNNRTG 2 cut(s) 40, 150
Sse9I AATT 1 cut(s) 18
SsiI CCGC 9 cut(s) 49, 100, 119, 137, 158, 324, 333, 340, 343
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 301
StyI CCWWGG 2 cut(s) 128, 313
TaqI TCGA 2 cut(s) 173, 394
TaqII GACCGA 2 cut(s) 209, 387
TasI AATT 1 cut(s) 18
TauI GCSGC 2 cut(s) 139, 345
TspDTI ATGAA 2 cut(s) 239, 417
Van91I CCANNNNNTGG 1 cut(s) 187
VneI GTGCAC 1 cut(s) 153
VpaK11BI GGWCC 4 cut(s) 192, 317, 370, 385
XagI CCTNNNNNAGG 1 cut(s) 253
XmaJI CCTAGG 1 cut(s) 128
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.