Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003962

Physical Location & Seq

Genomic Coordinates Forward (+)

59751166 .. 59753026

Gene Structure 1861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21067

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTTACTCAACTTTGCAGGAAATAGGGTTAGGCTAGCAACTCATGCAAATTTCAAAGATTTTGTCCTTACTGCTGGGTTGGAGTTCTTTCCTTTAGGTGGAGATCCAAAAGTTCTTGCCGAATTCCTGTTTAAAGCAGATGCAATAATTGCCAACCCACCAGCATATGGGCACTCTCATGTTGCTGAGGCACTAAAAATACCGATTCATATATTTTTCACAATGCCATGGACGCAAGTATTTCTAATTAACTATTATCTTGTTATTGCTTTAGACTTTCTGTGTCCATTGTTTGTTTTGGTGCTATGTGTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_28 UDPGT

Protein Analysis

105

Amino Acids

11.74

Weight (kDa)

6.38

Isoelectric Point (pI)

12.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_28	PF03033	44 - 78	2.3e-06	Glycosyltransferase family 28 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003962)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318821 RchiOBHm_Chr1g0318831 RchiOBHm_Chr1g0346331 RchiOBHm_Chr4g0409541 RchiOBHm_Chr5g0051691 RchiOBHm_Chr7g0235061 RchiOBHm_Chr7g0235071
rosa_multiflora	Rmu_co8511089.1_g000002 Rmu_sc0001141.1_g000012 Rmu_sc0007791.1_g000003 Rmu_sc0009346.1_g000011 Rmu_sc0014538.1_g000001 Rmu_ssc0000368.1_g000052
rosa_roxburghii	Rroxscaffold_1G00017540 Rroxscaffold_5G00346710 Rroxscaffold_5G00350080 Rroxscaffold_5G00363030
rosa_rugosa	Rorug01G0067000 Rorug01G0211600 Rorug02G0440000 Rorug02G0478600 Rorug03G0012700 Rorug04G0064400 Rorug04G0083800 Rorug05G0214100 Rorug06G0052700 Rorug07G0206200 Rorug07G0268600 Rorug07G0313000
rosa_samantha	Rh4CG156700 Rh5BG128100 Rh5BG361200 Rh7BG438500 Rh7CG485900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	167
AclWI	GGATC	1 cut(s)	98
AcsI	RAATTY	2 cut(s)	49, 122
AfiI	CCNNNNNNNGG	2 cut(s)	98, 167
AgsI	TTSAA	1 cut(s)	55
AlwI	GGATC	1 cut(s)	98
ApoI	RAATTY	2 cut(s)	49, 122
ArsI	GACNNNNNNTTYG	2 cut(s)	48, 80
AsuNHI	GCTAGC	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	174
BbvCI	CCTCAGC	1 cut(s)	186
BfaI	CTAG	1 cut(s)	35
BmsI	GCATC	1 cut(s)	130
BmtI	GCTAGC	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 167
BseDI	CCNNGG	1 cut(s)	227
BseLI	CCNNNNNNNGG	2 cut(s)	98, 167
BseMII	CTCAG	1 cut(s)	177
BseSI	GKGCMC	1 cut(s)	174
BseYI	CCCAGC	1 cut(s)	74
BslI	CCNNNNNNNGG	2 cut(s)	98, 167
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	103
Bsp19I	CCATGG	1 cut(s)	227
BspCNI	CTCAG	1 cut(s)	178
BspOI	GCTAGC	1 cut(s)	38
BspPI	GGATC	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	1 cut(s)	103
BssT1I	CCWWGG	1 cut(s)	227
BstAPI	GCANNNNNTGC	2 cut(s)	44, 149
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	186
BstDSI	CCRYGG	1 cut(s)	227
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 149, 232
BstSLI	GKGCMC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BtgI	CCRYGG	1 cut(s)	227
Cac8I	GCNNGC	1 cut(s)	36
CseI	GACGC	1 cut(s)	241
CviAII	CATG	3 cut(s)	44, 179, 228
CviJI	RGCY	1 cut(s)	34
CviKI_1	RGCY	1 cut(s)	34
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
DraI	TTTAAA	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	227
EcoRI	GAATTC	1 cut(s)	122
EcoT14I	CCWWGG	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	3 cut(s)	47, 182, 231
FaiI	YATR	8 cut(s)	45, 166, 168, 180, 210, 212, 229, 307
FatI	CATG	3 cut(s)	43, 178, 227
FauNDI	CATATG	1 cut(s)	166
FspBI	CTAG	1 cut(s)	35
GsaI	CCCAGC	1 cut(s)	78
HgaI	GACGC	1 cut(s)	241
Hin1II	CATG	3 cut(s)	47, 182, 231
HinfI	GANTC	1 cut(s)	205
HpyCH4V	TGCA	3 cut(s)	17, 47, 143
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 149, 232
HpyF3I	CTNAG	1 cut(s)	186
Hsp92II	CATG	3 cut(s)	47, 182, 231
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	4 cut(s)	3, 60, 140, 174
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	4 cut(s)	49, 122, 147, 246
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	1 cut(s)	181
MseI	TTAA	3 cut(s)	132, 249, 316
MslI	CAYNNNNRTG	1 cut(s)	177
MwoI	GCNNNNNNNGC	3 cut(s)	44, 149, 232
NcoI	CCATGG	1 cut(s)	227
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	1 cut(s)	103
NheI	GCTAGC	1 cut(s)	34
NlaIII	CATG	3 cut(s)	47, 182, 231
PfeI	GAWTC	1 cut(s)	205
PflMI	CCANNNNNTGG	1 cut(s)	167
PspFI	CCCAGC	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	132, 249, 316
Sau3AI	GATC	1 cut(s)	103
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	1 cut(s)	100
SfaNI	GCATC	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	4 cut(s)	49, 122, 147, 246
SspMI	CTAG	1 cut(s)	35
StyI	CCWWGG	1 cut(s)	227
TasI	AATT	4 cut(s)	49, 122, 147, 246
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	3 cut(s)	132, 249, 316
Tru9I	TTAA	3 cut(s)	132, 249, 316
TspDTI	ATGAA	1 cut(s)	197
Van91I	CCANNNNNTGG	1 cut(s)	167
XapI	RAATTY	2 cut(s)	49, 122
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.