Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003962

Physical Location & Seq

Genomic Coordinates Reverse (-)

34452088 .. 34463853

Gene Structure 11766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG156700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGTTCTTCGTACTGGGGAAAAGATAGAAGAAAAATGGGTTTCAATCTAGACATCAACATACCGGAGTTGAAACTAGGGTTCCATTTGTGGGTTCTTCGATTTGGGGGTTTCTCGGCGATTCTTGGAAATAGGGTTAGGCTAGCAACTCATGCAAATTTCAAAGATTTTATCCTTACTGCTGGGTTGGAGTTCTTTCCTTTAGGTGGAGATCCAAAAGTTCTTGCCGAATGCCTACCAGTGAATTCCCTCATCCTCTATCCCGTGTCAAGGAACATATTGGATATAGATGCAATTGCTAGATTATTGCTGATTGCAAGTTCTGCTGTCATGGCATCAGAGGATGAGGGCATATCAGCATGTCATTCTGTTCCTACGTGGCTTCAAGCTCTCCGTCATGGATCGCATTCGTGCATGTTCTATGGAAATGTTAATTTGTGGCCCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009987 GO:0010501 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0034641 GO:0034645 GO:0035825 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0061982 GO:0070013 GO:0070035 GO:0070192 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:0140097 GO:0140098 GO:1901360 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

DEAD Helicase_C Sec63

Protein Analysis

149

Amino Acids

16.49

Weight (kDa)

7.79

Isoelectric Point (pI)

61.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003962)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318821 RchiOBHm_Chr1g0318831 RchiOBHm_Chr1g0346331 RchiOBHm_Chr4g0409541 RchiOBHm_Chr5g0051691 RchiOBHm_Chr7g0235061 RchiOBHm_Chr7g0235071
rosa_multiflora	Rmu_co8511089.1_g000002 Rmu_sc0001141.1_g000012 Rmu_sc0007791.1_g000003 Rmu_sc0009346.1_g000011 Rmu_sc0014538.1_g000001 Rmu_ssc0000368.1_g000052
rosa_roxburghii	Rroxscaffold_1G00017540 Rroxscaffold_5G00346710 Rroxscaffold_5G00350080 Rroxscaffold_5G00363030
rosa_rugosa	Rorug01G0067000 Rorug01G0211600 Rorug02G0440000 Rorug02G0478600 Rorug03G0012700 Rorug04G0064400 Rorug04G0083800 Rorug05G0214100 Rorug06G0052700 Rorug07G0206200 Rorug07G0268600 Rorug07G0313000
rosa_samantha	Rh4CG156700 Rh5BG128100 Rh5BG361200 Rh7BG438500 Rh7CG485900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	206, 409
AcsI	RAATTY	2 cut(s)	157, 244
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	3 cut(s)	91, 206, 270
AgsI	TTSAA	4 cut(s)	46, 73, 163, 386
AluBI	AGCT	1 cut(s)	389
AluI	AGCT	1 cut(s)	389
AlwI	GGATC	2 cut(s)	206, 409
AoxI	GGCC	1 cut(s)	440
ApoI	RAATTY	2 cut(s)	157, 244
AspS9I	GGNCC	1 cut(s)	441
AsuNHI	GCTAGC	1 cut(s)	142
BfaI	CTAG	4 cut(s)	50, 77, 143, 300
BmgT120I	GGNCC	1 cut(s)	441
BmiI	GGNNCC	1 cut(s)	83
BmrI	ACTGGG	1 cut(s)	25
BmsI	GCATC	2 cut(s)	280, 344
BmtI	GCTAGC	1 cut(s)	146
BmuI	ACTGGG	1 cut(s)	25
BsaAI	YACGTR	1 cut(s)	378
BsaWI	WCCGGW	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 206, 270
Bse1I	ACTGG	2 cut(s)	20, 239
BseGI	GGATG	2 cut(s)	252, 349
BseLI	CCNNNNNNNGG	3 cut(s)	91, 206, 270
BseNI	ACTGG	2 cut(s)	20, 239
BseYI	CCCAGC	1 cut(s)	182
BshFI	GGCC	1 cut(s)	442
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	3 cut(s)	91, 206, 270
BsmI	GAATGC	2 cut(s)	236, 406
BsnI	GGCC	1 cut(s)	442
Bsp143I	GATC	2 cut(s)	211, 401
BspANI	GGCC	1 cut(s)	442
BspLI	GGNNCC	1 cut(s)	83
BspOI	GCTAGC	1 cut(s)	146
BspPI	GGATC	2 cut(s)	206, 409
BsrI	ACTGG	2 cut(s)	20, 239
BssMI	GATC	2 cut(s)	211, 401
BstAPI	GCANNNNNTGC	2 cut(s)	152, 323
BstBAI	YACGTR	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	252, 349
BstKTI	GATC	2 cut(s)	214, 404
BstMBI	GATC	2 cut(s)	211, 401
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 323, 332
BstNSI	RCATGY	2 cut(s)	363, 418
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	442
BtsCI	GGATG	2 cut(s)	252, 349
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	441
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	5 cut(s)	152, 331, 360, 398, 415
CviJI	RGCY	4 cut(s)	142, 382, 389, 442
CviKI_1	RGCY	4 cut(s)	142, 382, 389, 442
CviQI	GTAC	1 cut(s)	13
DpnI	GATC	2 cut(s)	213, 403
DpnII	GATC	2 cut(s)	211, 401
EcoRI	GAATTC	1 cut(s)	244
FaeI	CATG	5 cut(s)	155, 334, 363, 401, 418
FatI	CATG	5 cut(s)	151, 330, 359, 397, 414
FokI	GGATG	2 cut(s)	239, 356
FspBI	CTAG	4 cut(s)	50, 77, 143, 300
GsaI	CCCAGC	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	442
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	5 cut(s)	155, 334, 363, 401, 418
HinfI	GANTC	1 cut(s)	121
HpaII	CCGG	1 cut(s)	65
Hpy188I	TCNGA	1 cut(s)	340
Hpy188III	TCNNGA	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	377
HpyCH4V	TGCA	4 cut(s)	155, 293, 317, 414
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 323, 332
HpySE526I	ACGT	1 cut(s)	377
Hsp92II	CATG	5 cut(s)	155, 334, 363, 401, 418
Kzo9I	GATC	2 cut(s)	211, 401
LpnPI	CCDG	3 cut(s)	78, 168, 252
LweI	GCATC	2 cut(s)	280, 344
MaeI	CTAG	4 cut(s)	50, 77, 143, 300
MaeII	ACGT	1 cut(s)	377
MalI	GATC	2 cut(s)	213, 403
MboI	GATC	2 cut(s)	211, 401
MboII	GAAGA	2 cut(s)	42, 89
MfeI	CAATTG	1 cut(s)	294
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	4 cut(s)	157, 244, 294, 433
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	4 cut(s)	260, 266, 334, 340
MseI	TTAA	1 cut(s)	432
MspI	CCGG	1 cut(s)	65
MunI	CAATTG	1 cut(s)	294
Mva1269I	GAATGC	2 cut(s)	236, 406
MwoI	GCNNNNNNNGC	3 cut(s)	152, 323, 332
NdeII	GATC	2 cut(s)	211, 401
NheI	GCTAGC	1 cut(s)	142
NlaIII	CATG	5 cut(s)	155, 334, 363, 401, 418
NlaIV	GGNNCC	1 cut(s)	83
NmeAIII	GCCGAG	1 cut(s)	95
NspI	RCATGY	2 cut(s)	363, 418
PctI	GAATGC	2 cut(s)	236, 406
PfeI	GAWTC	1 cut(s)	121
Ppu21I	YACGTR	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	83
PspPI	GGNCC	1 cut(s)	441
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	432
Sau3AI	GATC	2 cut(s)	211, 401
Sau96I	GGNCC	1 cut(s)	441
SetI	ASST	3 cut(s)	208, 380, 391
SfaNI	GCATC	2 cut(s)	280, 344
Sse9I	AATT	4 cut(s)	157, 244, 294, 433
SspMI	CTAG	4 cut(s)	50, 77, 143, 300
TaiI	ACGT	1 cut(s)	380
TaqI	TCGA	1 cut(s)	100
TasI	AATT	4 cut(s)	157, 244, 294, 433
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TscAI	CASTG	1 cut(s)	246
TspGWI	ACGGA	1 cut(s)	383
TspRI	CASTG	1 cut(s)	246
XapI	RAATTY	2 cut(s)	157, 244
XbaI	TCTAGA	1 cut(s)	49
XceI	RCATGY	2 cut(s)	363, 418
XspI	CTAG	4 cut(s)	50, 77, 143, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.