Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003962

Physical Location & Seq

Genomic Coordinates Forward (+)

6393525 .. 6395037

Gene Structure 1513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54908

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTTCAAGAATAAAGGTTTCTTGCCATCGGAACCTTCGGAAGTATCTATTCAGCGACAGCAAATAAAAGAAATAATATTTTCTTTACTTCCTGCGTGGAAAGAACCTTATCCTGATTCGAAAGTCCCGTTTAAAGCAGATGCAATAATTGCCAACCCACCAGCATATGGGCACTCTCATGTTGCTGAGGCACTAAAAATACCGATTCATATATTTTTCACAATGCCATGGACGCCTACCAGTGAATTCCCTCACCCTCTATCCTGTGTCAAGCGACATATTGGATATAGAGTGAGTCTCATATCAAACTTAAATATCTTACTGATTTTGATTTGCATTGGTGCTTTTGTTGGCCAGTTCTTTATTTTGCTGTTGAACAATTTTTTCTTTTCTTTCAAGCTATCATATCTAATAGTTGATGCATTAATTTGGCTAGCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_28 UDPGT

Protein Analysis

147

Amino Acids

16.76

Weight (kDa)

8.95

Isoelectric Point (pI)

43.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_28	PF03033	6 - 83	4.2e-10	Glycosyltransferase family 28 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003962)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318821 RchiOBHm_Chr1g0318831 RchiOBHm_Chr1g0346331 RchiOBHm_Chr4g0409541 RchiOBHm_Chr5g0051691 RchiOBHm_Chr7g0235061 RchiOBHm_Chr7g0235071
rosa_multiflora	Rmu_co8511089.1_g000002 Rmu_sc0001141.1_g000012 Rmu_sc0007791.1_g000003 Rmu_sc0009346.1_g000011 Rmu_sc0014538.1_g000001 Rmu_ssc0000368.1_g000052
rosa_roxburghii	Rroxscaffold_1G00017540 Rroxscaffold_5G00346710 Rroxscaffold_5G00350080 Rroxscaffold_5G00363030
rosa_rugosa	Rorug01G0067000 Rorug01G0211600 Rorug02G0440000 Rorug02G0478600 Rorug03G0012700 Rorug04G0064400 Rorug04G0083800 Rorug05G0214100 Rorug06G0052700 Rorug07G0206200 Rorug07G0268600 Rorug07G0313000
rosa_samantha	Rh4CG156700 Rh5BG128100 Rh5BG361200 Rh7BG438500 Rh7CG485900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	167
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	1 cut(s)	245
AcyI	GRCGYC	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	3 cut(s)	7, 376, 397
AluBI	AGCT	1 cut(s)	400
AluI	AGCT	1 cut(s)	400
Alw26I	GTCTC	1 cut(s)	302
AoxI	GGCC	1 cut(s)	352
ApoI	RAATTY	1 cut(s)	245
AseI	ATTAAT	1 cut(s)	425
AsuHPI	GGTGA	1 cut(s)	245
AsuII	TTCGAA	1 cut(s)	119
AsuNHI	GCTAGC	1 cut(s)	433
BaeGI	GKGCMC	1 cut(s)	174
BalI	TGGCCA	1 cut(s)	354
BbvCI	CCTCAGC	1 cut(s)	186
BccI	CCATC	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	1 cut(s)	434
BmiI	GGNNCC	1 cut(s)	33
BmsI	GCATC	2 cut(s)	130, 409
BmtI	GCTAGC	1 cut(s)	437
BplI	GAGNNNNNCTC	2 cut(s)	282, 314
Bpu10I	CCTNAGC	1 cut(s)	186
Bpu14I	TTCGAA	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse1I	ACTGG	2 cut(s)	240, 355
BseDI	CCNNGG	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	2 cut(s)	240, 355
BseSI	GKGCMC	1 cut(s)	174
BshFI	GGCC	1 cut(s)	354
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	354
Bsp119I	TTCGAA	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp19I	CCATGG	1 cut(s)	227
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	33
BspOI	GCTAGC	1 cut(s)	437
BspT104I	TTCGAA	1 cut(s)	119
BsrI	ACTGG	2 cut(s)	240, 355
BssECI	CCNNGG	1 cut(s)	227
BssNI	GRCGYC	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	227
BstACI	GRCGYC	1 cut(s)	233
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstBI	TTCGAA	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	1 cut(s)	186
BstDSI	CCRYGG	1 cut(s)	227
BstMAI	GTCTC	1 cut(s)	302
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 232
BstSLI	GKGCMC	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	354
BtgI	CCRYGG	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	435
CseI	GACGC	1 cut(s)	241
CviAII	CATG	2 cut(s)	179, 228
CviJI	RGCY	3 cut(s)	354, 400, 433
CviKI_1	RGCY	3 cut(s)	354, 400, 433
DdeI	CTNAG	1 cut(s)	186
DraI	TTTAAA	1 cut(s)	133
EaeI	YGGCCR	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	227
EcoRI	GAATTC	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	227
EcoT22I	ATGCAT	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	2 cut(s)	182, 231
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	2 cut(s)	178, 227
FauNDI	CATATG	1 cut(s)	166
FspBI	CTAG	1 cut(s)	434
HaeIII	GGCC	1 cut(s)	354
HgaI	GACGC	1 cut(s)	241
Hin1I	GRCGYC	1 cut(s)	233
Hin1II	CATG	2 cut(s)	182, 231
HinfI	GANTC	3 cut(s)	116, 205, 295
HphI	GGTGA	1 cut(s)	245
Hpy188I	TCNGA	2 cut(s)	31, 40
Hpy188III	TCNNGA	2 cut(s)	7, 113
HpyAV	CCTTC	1 cut(s)	45
HpyCH4V	TGCA	3 cut(s)	143, 336, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 232
HpyF3I	CTNAG	1 cut(s)	186
Hsp92I	GRCGYC	1 cut(s)	233
Hsp92II	CATG	2 cut(s)	182, 231
LpnPI	CCDG	6 cut(s)	105, 126, 174, 253, 277, 368
LweI	GCATC	2 cut(s)	130, 409
MaeI	CTAG	1 cut(s)	434
MhlI	GDGCHC	1 cut(s)	174
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	5 cut(s)	147, 245, 379, 426, 438
MluNI	TGGCCA	1 cut(s)	354
MlyI	GAGTC	1 cut(s)	304
MnlI	CCTC	3 cut(s)	181, 261, 267
Mox20I	TGGCCA	1 cut(s)	354
Mph1103I	ATGCAT	1 cut(s)	424
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	3 cut(s)	132, 311, 425
MslI	CAYNNNNRTG	1 cut(s)	177
Msp20I	TGGCCA	1 cut(s)	354
MwoI	GCNNNNNNNGC	2 cut(s)	149, 232
NcoI	CCATGG	1 cut(s)	227
NdeI	CATATG	1 cut(s)	166
NheI	GCTAGC	1 cut(s)	433
NlaIII	CATG	2 cut(s)	182, 231
NlaIV	GGNNCC	1 cut(s)	33
NsiI	ATGCAT	1 cut(s)	424
NspV	TTCGAA	1 cut(s)	119
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	116, 205
PflMI	CCANNNNNTGG	1 cut(s)	167
PleI	GAGTC	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	303
PshBI	ATTAAT	1 cut(s)	425
PspN4I	GGNNCC	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	132, 311, 425
SchI	GAGTC	1 cut(s)	304
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	4 cut(s)	19, 37, 109, 402
SfaNI	GCATC	2 cut(s)	130, 409
SfuI	TTCGAA	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	5 cut(s)	147, 245, 379, 426, 438
SspI	AATATT	1 cut(s)	78
SspMI	CTAG	1 cut(s)	434
StyI	CCWWGG	1 cut(s)	227
TaqI	TCGA	1 cut(s)	119
TasI	AATT	5 cut(s)	147, 245, 379, 426, 438
TfiI	GAWTC	2 cut(s)	116, 205
Tru1I	TTAA	3 cut(s)	132, 311, 425
Tru9I	TTAA	3 cut(s)	132, 311, 425
TscAI	CASTG	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	197
TspRI	CASTG	1 cut(s)	247
Van91I	CCANNNNNTGG	1 cut(s)	167
VspI	ATTAAT	1 cut(s)	425
XapI	RAATTY	1 cut(s)	245
XspI	CTAG	1 cut(s)	434
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.