Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003962

Physical Location & Seq

Genomic Coordinates Forward (+)

6392739 .. 6393286

Gene Structure 548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54907

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGTTACTCAACTTTGCAGGAAATAGGGTTAGGCTAGCAACTCATGCAAATTTCAAAGATTTTGTCCTTACTGCTGGGTTGGAGTTCTTTCCTTTAGGTGGAGATCCAAAAGTTCTTGCCGAATGTTCTTATTTTCTTTTTAATGAAGGACAAGGTATTTACCAACTGTCTCGTTTGATCTATCAGACTTATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_28 UDPGT

Protein Analysis

65

Amino Acids

7.37

Weight (kDa)

6.52

Isoelectric Point (pI)

12.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003962)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318821 RchiOBHm_Chr1g0318831 RchiOBHm_Chr1g0346331 RchiOBHm_Chr4g0409541 RchiOBHm_Chr5g0051691 RchiOBHm_Chr7g0235061 RchiOBHm_Chr7g0235071
rosa_multiflora	Rmu_co8511089.1_g000002 Rmu_sc0001141.1_g000012 Rmu_sc0007791.1_g000003 Rmu_sc0009346.1_g000011 Rmu_sc0014538.1_g000001 Rmu_ssc0000368.1_g000052
rosa_roxburghii	Rroxscaffold_1G00017540 Rroxscaffold_5G00346710 Rroxscaffold_5G00350080 Rroxscaffold_5G00363030
rosa_rugosa	Rorug01G0067000 Rorug01G0211600 Rorug02G0440000 Rorug02G0478600 Rorug03G0012700 Rorug04G0064400 Rorug04G0083800 Rorug05G0214100 Rorug06G0052700 Rorug07G0206200 Rorug07G0268600 Rorug07G0313000
rosa_samantha	Rh4CG156700 Rh5BG128100 Rh5BG361200 Rh7BG438500 Rh7CG485900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	98
AcsI	RAATTY	1 cut(s)	49
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	55
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	49
ArsI	GACNNNNNNTTYG	2 cut(s)	48, 80
AsuNHI	GCTAGC	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	1 cut(s)	35
BmtI	GCTAGC	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseYI	CCCAGC	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	103, 177
BspOI	GCTAGC	1 cut(s)	38
BspPI	GGATC	1 cut(s)	98
BssMI	GATC	2 cut(s)	103, 177
Bst4CI	ACNGT	1 cut(s)	168
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	36
BstKTI	GATC	2 cut(s)	106, 180
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	2 cut(s)	103, 177
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	36
CviAII	CATG	1 cut(s)	44
CviJI	RGCY	1 cut(s)	34
CviKI_1	RGCY	1 cut(s)	34
DpnI	GATC	2 cut(s)	105, 179
DpnII	GATC	2 cut(s)	103, 177
FaeI	CATG	1 cut(s)	47
FaiI	YATR	2 cut(s)	45, 196
FatI	CATG	1 cut(s)	43
FspBI	CTAG	1 cut(s)	35
GsaI	CCCAGC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	47
Hpy188I	TCNGA	1 cut(s)	186
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4V	TGCA	2 cut(s)	17, 47
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
Hsp92II	CATG	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	103, 177
LpnPI	CCDG	2 cut(s)	3, 60
MaeI	CTAG	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	2 cut(s)	105, 179
MboI	GATC	2 cut(s)	103, 177
MflI	RGATCY	1 cut(s)	103
MluCI	AATT	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	60
MseI	TTAA	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	44
NdeII	GATC	2 cut(s)	103, 177
NheI	GCTAGC	1 cut(s)	34
NlaIII	CATG	1 cut(s)	47
PspFI	CCCAGC	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	141
Sau3AI	GATC	2 cut(s)	103, 177
SetI	ASST	2 cut(s)	100, 157
SgeI	CNNG	7 cut(s)	30, 47, 56, 87, 128, 164, 183
Sse9I	AATT	1 cut(s)	49
SspMI	CTAG	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	168
TasI	AATT	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TspDTI	ATGAA	2 cut(s)	159, 183
XapI	RAATTY	1 cut(s)	49
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.