Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003962

Physical Location & Seq

Genomic Coordinates Forward (+)

23685331 .. 23687702

Gene Structure 2372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00350080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGGGTTTCAATCTGCTACGATTAGGGTTCCATTTGTGGGTCATTCGATTTGTGGATTTATGGGCTACTCGATTTGGGGATTTGTGGGTTTCTTGACGATTCTTGCTGGTTTGCCTTATTTGCAGAGAATCTGCAGCAGAACATCTTCTCCAACCATTCCAAGGCCTCTTCATCACTACCTTCAACAATTGGACATTGAGACAAGGCATAAGAAGACCCGATGTTATGCTGATATTGAGAGGTCCAGTGTCCGGGAGATTGCTGGGATGAAAGCTTCGAACAGCTTTGTACTCGTTATGAAAGTGAGTAATACCAAAAATGGATGGGAGAATCTTGCCTCAGTTCTCTCGTCTGTGATGCTTTGGTTACTCCTCTATTTAGGTCCCTCTAAGTTTATGAAACTTGGTAATGATTTAAAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

141

Amino Acids

15.86

Weight (kDa)

9.84

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003962)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318821 RchiOBHm_Chr1g0318831 RchiOBHm_Chr1g0346331 RchiOBHm_Chr4g0409541 RchiOBHm_Chr5g0051691 RchiOBHm_Chr7g0235061 RchiOBHm_Chr7g0235071
rosa_multiflora	Rmu_co8511089.1_g000002 Rmu_sc0001141.1_g000012 Rmu_sc0007791.1_g000003 Rmu_sc0009346.1_g000011 Rmu_sc0014538.1_g000001 Rmu_ssc0000368.1_g000052
rosa_roxburghii	Rroxscaffold_1G00017540 Rroxscaffold_5G00346710 Rroxscaffold_5G00350080 Rroxscaffold_5G00363030
rosa_rugosa	Rorug01G0067000 Rorug01G0211600 Rorug02G0440000 Rorug02G0478600 Rorug03G0012700 Rorug04G0064400 Rorug04G0083800 Rorug05G0214100 Rorug06G0052700 Rorug07G0206200 Rorug07G0268600 Rorug07G0313000
rosa_samantha	Rh4CG156700 Rh5BG128100 Rh5BG361200 Rh7BG438500 Rh7CG485900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	291
AfiI	CCNNNNNNNGG	3 cut(s)	38, 162, 252
AgsI	TTSAA	2 cut(s)	11, 185
AloI	GAACNNNNNNTCC	2 cut(s)	133, 165
AluBI	AGCT	2 cut(s)	275, 285
AluI	AGCT	2 cut(s)	275, 285
Alw26I	GTCTC	1 cut(s)	194
AoxI	GGCC	1 cut(s)	164
ApeKI	GCWGC	1 cut(s)	135
Asp700I	GAANNNNTTC	1 cut(s)	145
AspS9I	GGNCC	2 cut(s)	243, 383
AsuC2I	CCSGG	1 cut(s)	254
AsuII	TTCGAA	1 cut(s)	278
AvaII	GGWCC	2 cut(s)	243, 383
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	194
BfmI	CTRYAG	1 cut(s)	133
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	254
Bme18I	GGWCC	2 cut(s)	243, 383
BmgT120I	GGNCC	2 cut(s)	243, 383
BmiI	GGNNCC	2 cut(s)	30, 385
BmrFI	CCNGG	1 cut(s)	254
BmsI	GCATC	1 cut(s)	348
BpiI	GAAGAC	1 cut(s)	221
Bpu14I	TTCGAA	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	161
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 162, 252
Bse1I	ACTGG	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	161
BseGI	GGATG	2 cut(s)	273, 329
BseLI	CCNNNNNNNGG	3 cut(s)	38, 162, 252
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	1 cut(s)	147
BseYI	CCCAGC	1 cut(s)	263
BshFI	GGCC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	253
BslFI	GGGAC	1 cut(s)	369
BslI	CCNNNNNNNGG	3 cut(s)	38, 162, 252
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	369
BsnI	GGCC	1 cut(s)	166
Bsp119I	TTCGAA	1 cut(s)	278
BspANI	GGCC	1 cut(s)	166
BspCNI	CTCAG	1 cut(s)	353
BspLI	GGNNCC	2 cut(s)	30, 385
BspMAI	CTGCAG	1 cut(s)	137
BspT104I	TTCGAA	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	161
BssT1I	CCWWGG	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	174
BstBI	TTCGAA	1 cut(s)	278
BstDEI	CTNAG	3 cut(s)	340, 390, 423
BstF5I	GGATG	2 cut(s)	273, 329
BstMAI	GTCTC	1 cut(s)	194
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	252
BstSFI	CTRYAG	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	147
BstV2I	GAAGAC	1 cut(s)	221
BsuRI	GGCC	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	273, 329
BtsIMutI	CAGTG	1 cut(s)	253
Cfr13I	GGNCC	2 cut(s)	243, 383
Csp6I	GTAC	1 cut(s)	290
CviJI	RGCY	4 cut(s)	66, 166, 275, 285
CviKI_1	RGCY	4 cut(s)	66, 166, 275, 285
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	3 cut(s)	340, 390, 423
DraI	TTTAAA	1 cut(s)	417
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	161
Eco147I	AGGCCT	1 cut(s)	166
Eco47I	GGWCC	2 cut(s)	243, 383
EcoO109I	RGGNCCY	1 cut(s)	383
EcoT14I	CCWWGG	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	161
FaiI	YATR	5 cut(s)	62, 210, 228, 299, 398
FaqI	GGGAC	1 cut(s)	369
Fnu4HI	GCNGC	1 cut(s)	136
FokI	GGATG	2 cut(s)	280, 336
Fsp4HI	GCNGC	1 cut(s)	136
GluI	GCNGC	1 cut(s)	136
GsaI	CCCAGC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	166
HapII	CCGG	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	273
HinfI	GANTC	3 cut(s)	100, 129, 331
HpaII	CCGG	1 cut(s)	253
Hpy188III	TCNNGA	1 cut(s)	94
HpyAV	CCTTC	1 cut(s)	191
HpyCH4V	TGCA	2 cut(s)	124, 135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	3 cut(s)	340, 390, 423
LpnPI	CCDG	4 cut(s)	93, 249, 259, 266
Lsp1109I	GCAGC	1 cut(s)	147
LweI	GCATC	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	366
MboII	GAAGA	3 cut(s)	138, 161, 226
MfeI	CAATTG	1 cut(s)	188
MluCI	AATT	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	5 cut(s)	177, 234, 349, 383, 397
MroXI	GAANNNNTTC	1 cut(s)	145
MseI	TTAA	1 cut(s)	416
MspI	CCGG	1 cut(s)	253
MspR9I	CCNGG	1 cut(s)	254
MunI	CAATTG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	121
NciI	CCSGG	1 cut(s)	254
NlaIV	GGNNCC	2 cut(s)	30, 385
NspV	TTCGAA	1 cut(s)	278
PceI	AGGCCT	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	145
PfeI	GAWTC	3 cut(s)	100, 129, 331
PfoI	TCCNGGA	1 cut(s)	252
PkrI	GCNGC	1 cut(s)	137
PpuMI	RGGWCCY	1 cut(s)	383
Psp5II	RGGWCCY	1 cut(s)	383
PspFI	CCCAGC	1 cut(s)	263
PspN4I	GGNNCC	2 cut(s)	30, 385
PspPI	GGNCC	2 cut(s)	243, 383
PspPPI	RGGWCCY	1 cut(s)	383
PstI	CTGCAG	1 cut(s)	137
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	416
SatI	GCNGC	1 cut(s)	136
Sau96I	GGNCC	2 cut(s)	243, 383
ScrFI	CCNGG	1 cut(s)	254
SetI	ASST	5 cut(s)	183, 245, 277, 287, 385
SfaNI	GCATC	1 cut(s)	348
SfcI	CTRYAG	1 cut(s)	133
SfuI	TTCGAA	1 cut(s)	278
SinI	GGWCC	2 cut(s)	243, 383
Sse9I	AATT	1 cut(s)	188
SseBI	AGGCCT	1 cut(s)	166
StuI	AGGCCT	1 cut(s)	166
StyD4I	CCNGG	1 cut(s)	252
StyI	CCWWGG	1 cut(s)	161
TaqI	TCGA	3 cut(s)	47, 71, 278
TasI	AATT	1 cut(s)	188
TatI	WGTACW	1 cut(s)	289
TfiI	GAWTC	3 cut(s)	100, 129, 331
Tru1I	TTAA	1 cut(s)	416
Tru9I	TTAA	1 cut(s)	416
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	1 cut(s)	135
TspDTI	ATGAA	4 cut(s)	161, 284, 314, 413
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	2 cut(s)	243, 383
XmnI	GAANNNNTTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.