Rorug07G0313000

Sterol 3-beta-glucosyltransferase UGT80A2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003962
Physical Location & Seq
Reverse (-)
31405855 .. 31408379
2525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0313000.1

Sequence Viewer

Length: 504 bp
ATGAGGACACCGAGAGCCGCGATTGGTCAACAGAATGTGCTGCTGGCCGGAAGTTCTAGCCGGAGAAGGGGACGGGGATCGAACAGTGTGTTACCTTCTTGGTATCCAAGAACCCCTCTCCGTGATATAACTGCTATTATCAGGGCCATTGAGAGGGGAAGAGCTCGCTTGGGTGAGGAGAATGGCGAAACTGCAGAGGGTCAATTTCCATCTCTACAAGTTCAGGATGCTCCTCCTGAGCATCAAGTTCTCGCTGCTACTCCCTCAACCAATAAGAAGAGACCTTGCCCACCTCCTTCTGTTCTTAAAGTGCACAAAATTCTGCTAGAGGTGGCTAATCAGCCTGATGAGGGAGAGTTTGTTACACCACAGAAGAAGCTACTGAACTCAATTGAGAAAGTTGAGAAGGTGGTGTTGGAAGAACTTCAGAGGCTGAAGAGGACCCTGAGTGCTAAGAAGGCAGAGAGGGAAAGAAAGGTTCGAACTTTGATGTCAATGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_28 UDPGT

Protein Analysis

167

Amino Acids

18.72

Weight (kDa)

10.59

Isoelectric Point (pI)

51.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 20
AciI CCGC 1 cut(s) 18
AclWI GGATC 1 cut(s) 85
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 318
AcuI CTGAAG 2 cut(s) 410, 455
AfiI CCNNNNNNNGG 3 cut(s) 67, 153, 350
AjuI GAANNNNNNNTTGG 2 cut(s) 398, 430
AluBI AGCT 2 cut(s) 164, 379
AluI AGCT 2 cut(s) 164, 379
Alw21I GWGCWC 2 cut(s) 166, 315
Alw26I GTCTC 1 cut(s) 274
Alw44I GTGCAC 1 cut(s) 311
AlwI GGATC 1 cut(s) 85
AlwNI CAGNNNCTG 1 cut(s) 433
AoxI GGCC 2 cut(s) 45, 144
ApaLI GTGCAC 1 cut(s) 311
ApeKI GCWGC 2 cut(s) 40, 254
ApoI RAATTY 1 cut(s) 318
Asp700I GAANNNNTTC 1 cut(s) 423
AspS9I GGNCC 2 cut(s) 144, 441
AsuHPI GGTGA 1 cut(s) 185
AsuII TTCGAA 1 cut(s) 481
AvaII GGWCC 1 cut(s) 441
BaeGI GKGCMC 1 cut(s) 315
BanII GRGCYC 1 cut(s) 166
Bbv12I GWGCWC 2 cut(s) 166, 315
BbvI GCAGC 2 cut(s) 27, 241
BccI CCATC 1 cut(s) 217
BciVI GTATCC 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 2 cut(s) 57, 326
BfmI CTRYAG 1 cut(s) 192
BfuI GTATCC 1 cut(s) 114
BisI GCNGC 3 cut(s) 18, 41, 255
BlsI GCNGC 3 cut(s) 19, 42, 256
Bme18I GGWCC 1 cut(s) 441
BmgT120I GGNCC 2 cut(s) 144, 441
BmiI GGNNCC 1 cut(s) 443
BmsI GCATC 2 cut(s) 217, 250
Bpu10I CCTNAGC 1 cut(s) 237
Bpu14I TTCGAA 1 cut(s) 481
BsaI GGTCTC 1 cut(s) 274
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 153, 350
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 3 cut(s) 67, 153, 350
BseMII CTCAG 2 cut(s) 228, 437
BseRI GAGGAG 2 cut(s) 191, 222
BseSI GKGCMC 1 cut(s) 315
BseXI GCAGC 2 cut(s) 27, 241
Bsh1236I CGCG 1 cut(s) 20
BshFI GGCC 2 cut(s) 47, 146
BsiHKAI GWGCWC 2 cut(s) 166, 315
BsiSI CCGG 2 cut(s) 48, 61
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 3 cut(s) 67, 153, 350
BsmAI GTCTC 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 84
BsnI GGCC 2 cut(s) 47, 146
Bso31I GGTCTC 1 cut(s) 274
Bsp119I TTCGAA 1 cut(s) 481
Bsp1286I GDGCHC 2 cut(s) 166, 315
Bsp143I GATC 1 cut(s) 77
BspACI CCGC 1 cut(s) 18
BspANI GGCC 2 cut(s) 47, 146
BspCNI CTCAG 2 cut(s) 229, 438
BspFNI CGCG 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 443
BspMAI CTGCAG 1 cut(s) 196
BspPI GGATC 1 cut(s) 85
BspQI GCTCTTC 1 cut(s) 154
BspT104I TTCGAA 1 cut(s) 481
BspTNI GGTCTC 1 cut(s) 274
BssMI GATC 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 86
Bst6I CTCTTC 3 cut(s) 154, 272, 431
BstBI TTCGAA 1 cut(s) 481
BstC8I GCNNGC 2 cut(s) 45, 166
BstDEI CTNAG 3 cut(s) 237, 446, 453
BstF5I GGATG 1 cut(s) 232
BstFNI CGCG 1 cut(s) 20
BstKTI GATC 1 cut(s) 80
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 1 cut(s) 77
BstMWI GCNNNNNNNGC 1 cut(s) 458
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 1 cut(s) 315
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 2 cut(s) 27, 241
BsuI GTATCC 1 cut(s) 114
BsuRI GGCC 2 cut(s) 47, 146
BtsCI GGATG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 91
Cac8I GCNNGC 2 cut(s) 45, 166
CaiI CAGNNNCTG 1 cut(s) 433
Cfr13I GGNCC 2 cut(s) 144, 441
CviJI RGCY 9 cut(s) 17, 47, 60, 146, 164, 335, 343, 379, 433
CviKI_1 RGCY 9 cut(s) 17, 47, 60, 146, 164, 335, 343, 379, 433
DdeI CTNAG 3 cut(s) 237, 446, 453
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 3 cut(s) 154, 272, 431
EarI CTCTTC 3 cut(s) 154, 272, 431
Ecl136II GAGCTC 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 166
Eco31I GGTCTC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 441
Eco53kI GAGCTC 1 cut(s) 164
Eco57I CTGAAG 2 cut(s) 410, 455
EcoICRI GAGCTC 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 441
EcoT38I GRGCYC 1 cut(s) 166
FaiI YATR 1 cut(s) 128
FaqI GGGAC 1 cut(s) 84
Fnu4HI GCNGC 3 cut(s) 18, 41, 255
FokI GGATG 1 cut(s) 239
FriOI GRGCYC 1 cut(s) 166
Fsp4HI GCNGC 3 cut(s) 18, 41, 255
FspBI CTAG 2 cut(s) 57, 326
GluI GCNGC 3 cut(s) 18, 41, 255
HaeIII GGCC 2 cut(s) 47, 146
HapII CCGG 2 cut(s) 48, 61
HincII GTYRAC 1 cut(s) 29
HindII GTYRAC 1 cut(s) 29
HpaII CCGG 2 cut(s) 48, 61
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 2 cut(s) 29, 313
Hpy188I TCNGA 1 cut(s) 429
Hpy188III TCNNGA 2 cut(s) 224, 236
Hpy8I GTNNAC 2 cut(s) 29, 313
HpyAV CCTTC 5 cut(s) 60, 105, 306, 400, 451
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4V TGCA 2 cut(s) 194, 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 458
HpyF3I CTNAG 3 cut(s) 237, 446, 453
Kzo9I GATC 1 cut(s) 77
LguI GCTCTTC 1 cut(s) 154
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 8 cut(s) 29, 61, 74, 127, 209, 249, 357, 458
Lsp1109I GCAGC 2 cut(s) 27, 241
LweI GCATC 2 cut(s) 217, 250
MaeI CTAG 2 cut(s) 57, 326
MaeIII GTNAC 2 cut(s) 90, 361
MalI GATC 1 cut(s) 79
MboI GATC 1 cut(s) 77
MboII GAAGA 5 cut(s) 171, 289, 385, 431, 448
MfeI CAATTG 1 cut(s) 390
MhlI GDGCHC 2 cut(s) 166, 315
MluCI AATT 3 cut(s) 203, 318, 390
MmeI TCCRAC 1 cut(s) 396
MroXI GAANNNNTTC 1 cut(s) 423
MseI TTAA 1 cut(s) 306
MspI CCGG 2 cut(s) 48, 61
MunI CAATTG 1 cut(s) 390
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 458
NdeII GATC 1 cut(s) 77
NlaIV GGNNCC 1 cut(s) 443
NspV TTCGAA 1 cut(s) 481
PciSI GCTCTTC 1 cut(s) 154
PdmI GAANNNNTTC 1 cut(s) 423
PkrI GCNGC 3 cut(s) 19, 42, 256
PpuMI RGGWCCY 1 cut(s) 441
Psp124BI GAGCTC 1 cut(s) 166
Psp5II RGGWCCY 1 cut(s) 441
PspN4I GGNNCC 1 cut(s) 443
PspPI GGNCC 2 cut(s) 144, 441
PspPPI RGGWCCY 1 cut(s) 441
PstI CTGCAG 1 cut(s) 196
PstNI CAGNNNCTG 1 cut(s) 433
SacI GAGCTC 1 cut(s) 166
SapI GCTCTTC 1 cut(s) 154
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 3 cut(s) 18, 41, 255
Sau3AI GATC 1 cut(s) 77
Sau96I GGNCC 2 cut(s) 144, 441
SduI GDGCHC 2 cut(s) 166, 315
SetI ASST 8 cut(s) 97, 166, 286, 295, 333, 381, 411, 480
SfaNI GCATC 2 cut(s) 217, 250
SfcI CTRYAG 1 cut(s) 192
SfuI TTCGAA 1 cut(s) 481
SinI GGWCC 1 cut(s) 441
Sse9I AATT 3 cut(s) 203, 318, 390
SsiI CCGC 1 cut(s) 18
SspMI CTAG 2 cut(s) 57, 326
SstI GAGCTC 1 cut(s) 166
TaaI ACNGT 1 cut(s) 86
TaqI TCGA 2 cut(s) 80, 481
TasI AATT 3 cut(s) 203, 318, 390
TauI GCSGC 1 cut(s) 20
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 1 cut(s) 91
TseI GCWGC 2 cut(s) 40, 254
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 1 cut(s) 91
VneI GTGCAC 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 441
XapI RAATTY 1 cut(s) 318
XmnI GAANNNNTTC 1 cut(s) 423
XspI CTAG 2 cut(s) 57, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.