Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0019362

Physical Location & Seq

Genomic Coordinates Reverse (-)

36656671 .. 36658073

Gene Structure 1403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00313310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTTGTCCAAGTACGCCCGGTCTCCCTACGCCATCGTTTTGCGCTTCTTCGCCGGAGTGGGAGCTTCGAATCGACTCGTAAAGATGGAGAGATCCGGTAGAAGCGGCGGTGATTTCCGAGACTTGCTTCGGAGATCCTCGGGAGGTTTGCCATTTGCTCTCATGCATAGACAGAATGTTCTTTATAGCAAGGCCGAGGCCTCATTCAATTTTGGATCAAAACCAATCATAAAAAGTCCTATCTCATTTCCCGAGAGAACACATGTTGGATTATGCCCTAGCATCGAATTACGAGTTGGGAAGTTTCAAAGTTTAGCTCGGATTTCGTTTATTAAGAAGATCGAGTGGCTGATGAAAATCAAGGACAATTGTCCGATGAAGATGATGATCCGTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

132

Amino Acids

14.97

Weight (kDa)

10.83

Isoelectric Point (pI)

65.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019362)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138861
rosa_multiflora	Rmu_sc0004359.1_g000016
rosa_roxburghii	Rroxscaffold_4G00313310
rosa_rugosa	Rorug04G0083800 Rorug04G0160500
rosa_samantha	Rh2CG371900 Rh4BG023300 Rh6BG022100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	105, 108
AclWI	GGATC	4 cut(s)	87, 129, 223, 382
AfaI	GTAC	1 cut(s)	14
AflIII	ACRYGT	1 cut(s)	262
AgsI	TTSAA	2 cut(s)	208, 308
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
AluBI	AGCT	2 cut(s)	65, 317
AluI	AGCT	2 cut(s)	65, 317
Alw26I	GTCTC	2 cut(s)	27, 114
AlwI	GGATC	4 cut(s)	87, 129, 223, 382
Ama87I	CYCGRG	2 cut(s)	139, 251
AoxI	GGCC	2 cut(s)	192, 198
AspLEI	GCGC	1 cut(s)	45
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	122
AsuII	TTCGAA	1 cut(s)	68
AvaI	CYCGRG	2 cut(s)	139, 251
BccI	CCATC	2 cut(s)	41, 79
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	2 cut(s)	27, 114
BfaI	CTAG	2 cut(s)	279, 397
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
Bme1390I	CCNGG	1 cut(s)	19
BmeT110I	CYCGRG	2 cut(s)	139, 251
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	291
BoxI	GACNNNNGTC	1 cut(s)	369
Bpu14I	TTCGAA	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	19
BsaBI	GATNNNNATC	2 cut(s)	356, 386
BsaI	GGTCTC	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	138, 195
BsaWI	WCCGGW	1 cut(s)	95
Bse8I	GATNNNNATC	2 cut(s)	356, 386
BseDI	CCNNGG	2 cut(s)	138, 195
BseJI	GATNNNNATC	2 cut(s)	356, 386
BshFI	GGCC	2 cut(s)	194, 200
BsiHKCI	CYCGRG	2 cut(s)	139, 251
BsiSI	CCGG	3 cut(s)	19, 54, 96
BsmAI	GTCTC	2 cut(s)	27, 114
BsnI	GGCC	2 cut(s)	194, 200
Bso31I	GGTCTC	1 cut(s)	27
BsoBI	CYCGRG	2 cut(s)	139, 251
Bsp119I	TTCGAA	1 cut(s)	68
Bsp143I	GATC	5 cut(s)	92, 134, 215, 339, 387
BspACI	CCGC	2 cut(s)	105, 108
BspANI	GGCC	2 cut(s)	194, 200
BspPI	GGATC	4 cut(s)	87, 129, 223, 382
BspT104I	TTCGAA	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	27
BssECI	CCNNGG	2 cut(s)	138, 195
BssMI	GATC	5 cut(s)	92, 134, 215, 339, 387
BstBI	TTCGAA	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	5 cut(s)	95, 137, 218, 342, 390
BstMAI	GTCTC	2 cut(s)	27, 114
BstMBI	GATC	5 cut(s)	92, 134, 215, 339, 387
BstNSI	RCATGY	1 cut(s)	266
BstPAI	GACNNNNGTC	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	17
BstX2I	RGATCY	2 cut(s)	92, 134
BstYI	RGATCY	2 cut(s)	92, 134
BsuRI	GGCC	2 cut(s)	194, 200
CfoI	GCGC	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	2 cut(s)	163, 263
CviJI	RGCY	5 cut(s)	65, 194, 200, 317, 349
CviKI_1	RGCY	5 cut(s)	65, 194, 200, 317, 349
CviQI	GTAC	1 cut(s)	13
DpnI	GATC	5 cut(s)	94, 136, 217, 341, 389
DpnII	GATC	5 cut(s)	92, 134, 215, 339, 387
Eco147I	AGGCCT	1 cut(s)	200
Eco31I	GGTCTC	1 cut(s)	27
Eco88I	CYCGRG	2 cut(s)	139, 251
EcoT22I	ATGCAT	1 cut(s)	168
FaeI	CATG	2 cut(s)	166, 266
FaiI	YATR	6 cut(s)	164, 168, 186, 230, 264, 274
FatI	CATG	2 cut(s)	162, 262
Fnu4HI	GCNGC	1 cut(s)	106
Fsp4HI	GCNGC	1 cut(s)	106
FspBI	CTAG	2 cut(s)	279, 397
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	1 cut(s)	106
HaeIII	GGCC	2 cut(s)	194, 200
HapII	CCGG	3 cut(s)	19, 54, 96
HhaI	GCGC	1 cut(s)	45
Hin1II	CATG	2 cut(s)	166, 266
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HinfI	GANTC	2 cut(s)	70, 75
HpaII	CCGG	3 cut(s)	19, 54, 96
HphI	GGTGA	1 cut(s)	122
Hpy188I	TCNGA	4 cut(s)	119, 132, 321, 375
Hpy188III	TCNNGA	2 cut(s)	141, 251
HpyCH4V	TGCA	1 cut(s)	166
Hsp92II	CATG	2 cut(s)	166, 266
HspAI	GCGC	1 cut(s)	43
Kzo9I	GATC	5 cut(s)	92, 134, 215, 339, 387
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	3 cut(s)	32, 67, 109
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	2 cut(s)	279, 397
MalI	GATC	5 cut(s)	94, 136, 217, 341, 389
MboI	GATC	5 cut(s)	92, 134, 215, 339, 387
MboII	GAAGA	3 cut(s)	40, 349, 391
MfeI	CAATTG	1 cut(s)	367
MflI	RGATCY	2 cut(s)	92, 134
MluCI	AATT	3 cut(s)	208, 287, 367
MlyI	GAGTC	1 cut(s)	69
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	4 cut(s)	137, 148, 190, 211
Mph1103I	ATGCAT	1 cut(s)	168
MseI	TTAA	1 cut(s)	333
MspI	CCGG	3 cut(s)	19, 54, 96
MspR9I	CCNGG	1 cut(s)	19
MunI	CAATTG	1 cut(s)	367
NciI	CCSGG	1 cut(s)	19
NdeII	GATC	5 cut(s)	92, 134, 215, 339, 387
NlaIII	CATG	2 cut(s)	166, 266
NmeAIII	GCCGAG	1 cut(s)	220
NsiI	ATGCAT	1 cut(s)	168
NspI	RCATGY	1 cut(s)	266
NspV	TTCGAA	1 cut(s)	68
PceI	AGGCCT	1 cut(s)	200
PciI	ACATGT	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	107
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
PscI	ACATGT	1 cut(s)	262
PshAI	GACNNNNGTC	1 cut(s)	369
PsuI	RGATCY	2 cut(s)	92, 134
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	5 cut(s)	92, 134, 215, 339, 387
SchI	GAGTC	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	19
SetI	ASST	3 cut(s)	67, 148, 319
SfaNI	GCATC	1 cut(s)	291
SfuI	TTCGAA	1 cut(s)	68
Sse9I	AATT	3 cut(s)	208, 287, 367
SseBI	AGGCCT	1 cut(s)	200
SsiI	CCGC	2 cut(s)	105, 108
SspMI	CTAG	2 cut(s)	279, 397
StuI	AGGCCT	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	17
TaqI	TCGA	4 cut(s)	68, 73, 285, 342
TasI	AATT	3 cut(s)	208, 287, 367
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TspDTI	ATGAA	2 cut(s)	368, 392
TspGWI	ACGGA	1 cut(s)	380
XceI	RCATGY	1 cut(s)	266
XspI	CTAG	2 cut(s)	279, 397
Zsp2I	ATGCAT	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.