Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0019362

Physical Location & Seq

Genomic Coordinates Reverse (-)

27944754 .. 27946448

Gene Structure 1695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0160500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGACAAGAAACCAAAGAATATTTGTGTTTCTTATTGCGGTCCTCCCACTTCTAGTGTCTGTGTGTTCGTCGGCGACCTCGGCTCCTTCTTCAAAACCACCACCGCCGCCGCCGCCACCACAGCAAAACAAGTTGACCTGGCATTACTATAAAGTCACCAACACATGCCGCGATGCAGAAGCTTTCATCCAGCACCAAGTCAAGAAGTTTTGGGACCAGGATAAAAGCATCACCGCTAAGCTTCTCCGGTTGCTCTACTCGGACTGCTTCATAACTGGTTGTGATGCATCAGTACTGCTGGATGGTCCAAACTCTGAGAAAACTGCACCGCAGAATTGGGGACTGGGAGGTTTCTATTTCATCGACAACGTGAAAAAAGTTCTTGAACATTACTGCCCCGGTGCCGTCTCGTGTGCTGATATTCTCAACCTTGCCACCAGGGATGCTGTTCATTTGGCAGGTGCACCGTCTTATCCTGTTCTTACGGGCCGAAGGGACGGTCTAACATCAAGCAGATCATCAGTCGACCTTCCCTCACCCTCCATTTCATGGCAGGCTTCACTTGACTACTTCAAATCCAGAGGCTTGAATGTATTGGATATGACTACTCTACTAGGTTCACATTCAATGGGTAAAACACATTGTCGCTTCATTTTGGATCGGCTCTACAATTTTAATGGCACAAACAAGCCAGACCCAAGCATGGAACCCTCATTCTTATCCTCCATGAGAAAGTTATGCCCACCAAGAACTACAAAGGGACAGAGTGACCCGCTGGTGTACCTAAACCCACAATCTGGGGCCAATTACAATTTTACACAATCCTACTACTCCAGAGTTTTTTCCAAGAAAGCTGTGCTGGGAGTCGACCAGCAGCTACTGTTTGGTGAAGACACCAAGGATATCACCGATGAGTTTGCAGCCGGTTTTGAAGATTTTCGGAGGTCATATGCTTACTCAATGAGCAGAATGGGTGCTATCAAGGTTTTGACAGGTAACCAGGGAGAGATACGCCGGAATTGCCGAGTTCCAAACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

346

Amino Acids

38.58

Weight (kDa)

9.12

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	64 - 308	2.9e-69	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019362)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138861
rosa_multiflora	Rmu_sc0004359.1_g000016
rosa_roxburghii	Rroxscaffold_4G00313310
rosa_rugosa	Rorug04G0083800 Rorug04G0160500
rosa_samantha	Rh2CG371900 Rh4BG023300 Rh6BG022100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	449
Acc36I	ACCTGC	1 cut(s)	449
AccB1I	GGYRCC	1 cut(s)	401
AccB7I	CCANNNNNTGG	2 cut(s)	549, 797
AccI	GTMKAC	2 cut(s)	525, 867
AccII	CGCG	1 cut(s)	171
AciI	CCGC	9 cut(s)	38, 104, 107, 110, 113, 169, 234, 329, 773
AclWI	GGATC	1 cut(s)	666
AfaI	GTAC	2 cut(s)	294, 782
AfiI	CCNNNNNNNGG	3 cut(s)	549, 703, 797
AgsI	TTSAA	6 cut(s)	93, 386, 574, 589, 627, 932
AjnI	CCWGG	4 cut(s)	137, 216, 437, 999
AluBI	AGCT	4 cut(s)	182, 241, 854, 877
AluI	AGCT	4 cut(s)	182, 241, 854, 877
Alw21I	GWGCWC	1 cut(s)	466
Alw26I	GTCTC	1 cut(s)	412
Alw44I	GTGCAC	1 cut(s)	462
AlwI	GGATC	1 cut(s)	666
AlwNI	CAGNNNCTG	1 cut(s)	880
AoxI	GGCC	2 cut(s)	487, 801
ApaLI	GTGCAC	1 cut(s)	462
ApeKI	GCWGC	2 cut(s)	874, 920
ArsI	GACNNNNNNTTYG	2 cut(s)	484, 516
Asp700I	GAANNNNTTC	1 cut(s)	936
AspS9I	GGNCC	5 cut(s)	40, 214, 305, 487, 801
AsuC2I	CCSGG	1 cut(s)	399
AsuHPI	GGTGA	5 cut(s)	148, 223, 528, 898, 899
AvaII	GGWCC	3 cut(s)	40, 214, 305
BaeGI	GKGCMC	1 cut(s)	466
BanI	GGYRCC	1 cut(s)	401
BauI	CACGAG	1 cut(s)	409
BbsI	GAAGAC	1 cut(s)	897
Bbv12I	GWGCWC	1 cut(s)	466
BbvI	GCAGC	2 cut(s)	886, 932
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	389
BcgI	CGANNNNNNTGC	2 cut(s)	899, 933
BciT130I	CCWGG	4 cut(s)	139, 218, 439, 1001
BcnI	CCSGG	1 cut(s)	399
BcoDI	GTCTC	1 cut(s)	412
BfaI	CTAG	2 cut(s)	53, 614
BfuAI	ACCTGC	1 cut(s)	449
BisI	GCNGC	6 cut(s)	107, 110, 113, 169, 875, 921
BlpI	GCTNAGC	1 cut(s)	237
BlsI	GCNGC	6 cut(s)	108, 111, 114, 170, 876, 922
BmcAI	AGTACT	1 cut(s)	294
Bme1390I	CCNGG	5 cut(s)	139, 218, 399, 439, 1001
Bme18I	GGWCC	3 cut(s)	40, 214, 305
BmgT120I	GGNCC	5 cut(s)	40, 214, 305, 487, 801
BmiI	GGNNCC	5 cut(s)	84, 215, 403, 708, 802
BmrFI	CCNGG	5 cut(s)	139, 218, 399, 439, 1001
BmrI	ACTGGG	1 cut(s)	353
BmsI	GCATC	5 cut(s)	163, 237, 274, 296, 433
BmuI	ACTGGG	1 cut(s)	353
BpiI	GAAGAC	1 cut(s)	897
BpmI	CTGGAG	1 cut(s)	817
Bpu1102I	GCTNAGC	1 cut(s)	237
BpuMI	CCSGG	1 cut(s)	399
BsaJI	CCNNGG	5 cut(s)	78, 397, 438, 897, 1000
BsaWI	WCCGGW	1 cut(s)	246
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	3 cut(s)	549, 703, 797
Bse118I	RCCGGY	1 cut(s)	923
Bse1I	ACTGG	2 cut(s)	280, 348
BseBI	CCWGG	4 cut(s)	139, 218, 439, 1001
BseDI	CCNNGG	5 cut(s)	78, 397, 438, 897, 1000
BseGI	GGATG	3 cut(s)	186, 307, 448
BseLI	CCNNNNNNNGG	3 cut(s)	549, 703, 797
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	2 cut(s)	280, 348
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	2 cut(s)	886, 932
BseYI	CCCAGC	1 cut(s)	859
BsgI	GTGCAG	1 cut(s)	309
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	489, 803
BshNI	GGYRCC	1 cut(s)	401
BsiHKAI	GWGCWC	1 cut(s)	466
BsiSI	CCGG	4 cut(s)	247, 399, 924, 1015
BslFI	GGGAC	4 cut(s)	227, 354, 509, 774
BslI	CCNNNNNNNGG	3 cut(s)	549, 703, 797
BsmAI	GTCTC	1 cut(s)	412
BsmBI	CGTCTC	1 cut(s)	412
BsmFI	GGGAC	4 cut(s)	227, 354, 509, 774
BsnI	GGCC	2 cut(s)	489, 803
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp143I	GATC	2 cut(s)	515, 658
Bsp1720I	GCTNAGC	1 cut(s)	237
BspACI	CCGC	9 cut(s)	38, 104, 107, 110, 113, 169, 234, 329, 773
BspANI	GGCC	2 cut(s)	489, 803
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	5 cut(s)	84, 215, 403, 708, 802
BspMI	ACCTGC	1 cut(s)	449
BspPI	GGATC	1 cut(s)	666
BspT107I	GGYRCC	1 cut(s)	401
BsrFI	RCCGGY	1 cut(s)	923
BsrI	ACTGG	2 cut(s)	280, 348
BssAI	RCCGGY	1 cut(s)	923
BssECI	CCNNGG	5 cut(s)	78, 397, 438, 897, 1000
BssMI	GATC	2 cut(s)	515, 658
BssSI	CACGAG	1 cut(s)	409
BssT1I	CCWWGG	1 cut(s)	897
Bst2BI	CACGAG	1 cut(s)	409
Bst2UI	CCWGG	4 cut(s)	139, 218, 439, 1001
Bst4CI	ACNGT	3 cut(s)	468, 500, 882
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	2 cut(s)	237, 315
BstEII	GGTNACC	1 cut(s)	995
BstF5I	GGATG	3 cut(s)	186, 307, 448
BstFNI	CGCG	1 cut(s)	171
BstKTI	GATC	2 cut(s)	518, 661
BstMAI	GTCTC	1 cut(s)	412
BstMBI	GATC	2 cut(s)	515, 658
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 112, 121, 1020
BstNI	CCWGG	4 cut(s)	139, 218, 439, 1001
BstNSI	RCATGY	1 cut(s)	168
BstPI	GGTNACC	1 cut(s)	995
BstSCI	CCNGG	5 cut(s)	137, 216, 397, 437, 999
BstSLI	GKGCMC	1 cut(s)	466
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	886, 932
BstV2I	GAAGAC	1 cut(s)	897
BsuRI	GGCC	2 cut(s)	489, 803
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	3 cut(s)	186, 307, 448
BveI	ACCTGC	1 cut(s)	449
Cac8I	GCNNGC	1 cut(s)	555
CaiI	CAGNNNCTG	1 cut(s)	880
Cfr10I	RCCGGY	1 cut(s)	923
Cfr13I	GGNCC	5 cut(s)	40, 214, 305, 487, 801
Csp6I	GTAC	2 cut(s)	293, 781
CviAII	CATG	4 cut(s)	165, 549, 703, 727
CviQI	GTAC	2 cut(s)	293, 781
DdeI	CTNAG	2 cut(s)	237, 315
DpnI	GATC	2 cut(s)	517, 660
DpnII	GATC	2 cut(s)	515, 658
Eco130I	CCWWGG	1 cut(s)	897
Eco32I	GATATC	1 cut(s)	904
Eco47I	GGWCC	3 cut(s)	40, 214, 305
Eco91I	GGTNACC	1 cut(s)	995
EcoO65I	GGTNACC	1 cut(s)	995
EcoRII	CCWGG	4 cut(s)	137, 216, 437, 999
EcoRV	GATATC	1 cut(s)	904
EcoT14I	CCWWGG	1 cut(s)	897
EcoT22I	ATGCAT	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	897
Esp3I	CGTCTC	1 cut(s)	412
FaeI	CATG	4 cut(s)	168, 552, 706, 730
FaqI	GGGAC	4 cut(s)	227, 354, 509, 774
FatI	CATG	4 cut(s)	164, 548, 702, 726
FauI	CCCGC	1 cut(s)	780
FauNDI	CATATG	1 cut(s)	949
FblI	GTMKAC	2 cut(s)	525, 867
Fnu4HI	GCNGC	6 cut(s)	107, 110, 113, 169, 875, 921
FokI	GGATG	3 cut(s)	173, 314, 455
Fsp4HI	GCNGC	6 cut(s)	107, 110, 113, 169, 875, 921
FspBI	CTAG	2 cut(s)	53, 614
GluI	GCNGC	6 cut(s)	107, 110, 113, 169, 875, 921
GsaI	CCCAGC	1 cut(s)	863
GsuI	CTGGAG	1 cut(s)	817
HaeIII	GGCC	2 cut(s)	489, 803
HapII	CCGG	4 cut(s)	247, 399, 924, 1015
Hin1II	CATG	4 cut(s)	168, 552, 706, 730
HincII	GTYRAC	3 cut(s)	135, 526, 868
HindII	GTYRAC	3 cut(s)	135, 526, 868
HindIII	AAGCTT	2 cut(s)	180, 239
HinfI	GANTC	1 cut(s)	864
HpaII	CCGG	4 cut(s)	247, 399, 924, 1015
HphI	GGTGA	5 cut(s)	148, 223, 528, 898, 899
Hpy166II	GTNNAC	6 cut(s)	135, 464, 526, 620, 781, 868
Hpy188I	TCNGA	3 cut(s)	262, 316, 942
Hpy188III	TCNNGA	4 cut(s)	202, 383, 579, 834
Hpy8I	GTNNAC	6 cut(s)	135, 464, 526, 620, 781, 868
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	3 cut(s)	96, 486, 539
HpyCH4III	ACNGT	3 cut(s)	468, 500, 882
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	5 cut(s)	176, 287, 326, 464, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 112, 121, 1020
HpyF3I	CTNAG	2 cut(s)	237, 315
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	4 cut(s)	168, 552, 706, 730
Kzo9I	GATC	2 cut(s)	515, 658
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	2 cut(s)	886, 932
LweI	GCATC	5 cut(s)	163, 237, 274, 296, 433
MaeI	CTAG	2 cut(s)	53, 614
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	3 cut(s)	154, 767, 995
MalI	GATC	2 cut(s)	517, 660
MboI	GATC	2 cut(s)	515, 658
MboII	GAAGA	3 cut(s)	81, 902, 944
MhlI	GDGCHC	1 cut(s)	466
MluCI	AATT	5 cut(s)	334, 670, 805, 811, 1018
MlyI	GAGTC	1 cut(s)	873
MnlI	CCTC	9 cut(s)	53, 88, 341, 544, 550, 575, 721, 733, 936
Mph1103I	ATGCAT	1 cut(s)	289
MroXI	GAANNNNTTC	1 cut(s)	936
MseI	TTAA	1 cut(s)	675
MspA1I	CMGCKG	1 cut(s)	775
MspI	CCGG	4 cut(s)	247, 399, 924, 1015
MspR9I	CCNGG	5 cut(s)	139, 218, 399, 439, 1001
MvaI	CCWGG	4 cut(s)	139, 218, 439, 1001
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	4 cut(s)	80, 112, 121, 1020
NciI	CCSGG	1 cut(s)	399
NdeI	CATATG	1 cut(s)	949
NdeII	GATC	2 cut(s)	515, 658
NlaIII	CATG	4 cut(s)	168, 552, 706, 730
NlaIV	GGNNCC	5 cut(s)	84, 215, 403, 708, 802
NmeAIII	GCCGAG	1 cut(s)	59
NmuCI	GTSAC	2 cut(s)	154, 767
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	1 cut(s)	168
PaqCI	CACCTGC	1 cut(s)	449
PdmI	GAANNNNTTC	1 cut(s)	936
PflMI	CCANNNNNTGG	2 cut(s)	549, 797
PkrI	GCNGC	6 cut(s)	108, 111, 114, 170, 876, 922
PleI	GAGTC	1 cut(s)	872
PpsI	GAGTC	1 cut(s)	872
Psp6I	CCWGG	4 cut(s)	137, 216, 437, 999
PspEI	GGTNACC	1 cut(s)	995
PspFI	CCCAGC	1 cut(s)	859
PspGI	CCWGG	4 cut(s)	137, 216, 437, 999
PspN4I	GGNNCC	5 cut(s)	84, 215, 403, 708, 802
PspPI	GGNCC	5 cut(s)	40, 214, 305, 487, 801
PstNI	CAGNNNCTG	1 cut(s)	880
RsaI	GTAC	2 cut(s)	294, 782
RsaNI	GTAC	2 cut(s)	293, 781
SalI	GTCGAC	2 cut(s)	524, 866
SaqAI	TTAA	1 cut(s)	675
SatI	GCNGC	6 cut(s)	107, 110, 113, 169, 875, 921
Sau3AI	GATC	2 cut(s)	515, 658
Sau96I	GGNCC	5 cut(s)	40, 214, 305, 487, 801
ScaI	AGTACT	1 cut(s)	294
SchI	GAGTC	1 cut(s)	873
ScrFI	CCNGG	5 cut(s)	139, 218, 399, 439, 1001
SduI	GDGCHC	1 cut(s)	466
SfaNI	GCATC	5 cut(s)	163, 237, 274, 296, 433
SinI	GGWCC	3 cut(s)	40, 214, 305
Sse9I	AATT	5 cut(s)	334, 670, 805, 811, 1018
SsiI	CCGC	9 cut(s)	38, 104, 107, 110, 113, 169, 234, 329, 773
SspI	AATATT	1 cut(s)	21
SspMI	CTAG	2 cut(s)	53, 614
StyD4I	CCNGG	5 cut(s)	137, 216, 397, 437, 999
StyI	CCWWGG	1 cut(s)	897
TaaI	ACNGT	3 cut(s)	468, 500, 882
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	3 cut(s)	363, 525, 867
TasI	AATT	5 cut(s)	334, 670, 805, 811, 1018
TatI	WGTACW	1 cut(s)	292
TauI	GCSGC	4 cut(s)	109, 112, 115, 171
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TseFI	GTSAC	2 cut(s)	154, 767
TseI	GCWGC	2 cut(s)	874, 920
Tsp45I	GTSAC	2 cut(s)	154, 767
TspDTI	ATGAA	6 cut(s)	175, 259, 349, 440, 537, 640
Van91I	CCANNNNNTGG	2 cut(s)	549, 797
VneI	GTGCAC	1 cut(s)	462
VpaK11BI	GGWCC	3 cut(s)	40, 214, 305
XceI	RCATGY	1 cut(s)	168
XmiI	GTMKAC	2 cut(s)	525, 867
XmnI	GAANNNNTTC	1 cut(s)	936
XspI	CTAG	2 cut(s)	53, 614
ZrmI	AGTACT	1 cut(s)	294
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.