Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004467.1

Orthogroup ID

OG0021668

Physical Location & Seq

Genomic Coordinates Forward (+)

188941 .. 189321

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004467.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

atgcttcagttcccagcttctggagcttctgatgtcatcttgacgtggcgcgtggcggcgcgtcaactgtggtatggggtacaccctcgttttcacgacaaggagcagaacatggtgaagcagaccaccggcttcaactggggcgccgtcggcatcttcacctctgtttggagcgacgtacgcctcagcgacatcctcaagcatagtgtgaaatcaattatgggtcatgatggcgtcgacgcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0006082 GO:0006807 GO:0006809 GO:0008150 GO:0008152 GO:0008940 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009703 GO:0009987 GO:0016020 GO:0016491 GO:0016661 GO:0017144 GO:0034641 GO:0042126 GO:0042128 GO:0042133 GO:0042136 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046209 GO:0046857 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0071941 GO:0071944 GO:0072593 GO:1903409 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00910 ko01120 map00910 map01120

Pfam Domains

Protein Families

Cyt-b5 FAD_binding_6 Mo-co_dimer NAD_binding_1 Oxidored_molyb

Protein Analysis

81

Amino Acids

9.1

Weight (kDa)

8.21

Isoelectric Point (pI)

16.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021668)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004467.1_g000052
rosa_roxburghii	Rroxscaffold_1G00049710 Rroxscaffold_5G00374650
rosa_samantha	Rh2BG246200 Rh7BG436000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	143
AccB7I	CCANNNNNTGG	1 cut(s)	20
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	3 cut(s)	51, 61, 242
AciI	CCGC	1 cut(s)	56
AcyI	GRCGYC	2 cut(s)	144, 234
AfaI	GTAC	2 cut(s)	81, 180
AfiI	CCNNNNNNNGG	2 cut(s)	20, 168
AflIII	ACRYGT	1 cut(s)	240
AgsI	TTSAA	1 cut(s)	136
AjiI	CACGTC	1 cut(s)	45
AluBI	AGCT	2 cut(s)	17, 26
AluI	AGCT	2 cut(s)	17, 26
AlwNI	CAGNNNCTG	1 cut(s)	20
AspLEI	GCGC	3 cut(s)	51, 61, 146
AsuHPI	GGTGA	2 cut(s)	127, 151
BanI	GGYRCC	1 cut(s)	143
BbvCI	CCTCAGC	1 cut(s)	185
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	1 cut(s)	131
BfoI	RGCGCY	1 cut(s)	147
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
BmgBI	CACGTC	1 cut(s)	45
BmiI	GGNNCC	1 cut(s)	145
BmrI	ACTGGG	1 cut(s)	148
BmsI	GCATC	1 cut(s)	162
BmuI	ACTGGG	1 cut(s)	148
BpmI	CTGGAG	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	182
BsaHI	GRCGYC	2 cut(s)	144, 234
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 168
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	143
BseGI	GGATG	1 cut(s)	192
BseLI	CCNNNNNNNGG	2 cut(s)	20, 168
BseMII	CTCAG	1 cut(s)	199
BseNI	ACTGG	1 cut(s)	143
BseYI	CCCAGC	1 cut(s)	13
Bsh1236I	CGCG	3 cut(s)	51, 61, 242
BshNI	GGYRCC	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	129
BsiWI	CGTACG	1 cut(s)	178
BslI	CCNNNNNNNGG	2 cut(s)	20, 168
BspACI	CCGC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	198
BspFNI	CGCG	3 cut(s)	51, 61, 242
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	145
BspT107I	GGYRCC	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	128
BssNI	GRCGYC	2 cut(s)	144, 234
Bst4CI	ACNGT	1 cut(s)	69
BstACI	GRCGYC	2 cut(s)	144, 234
BstDEI	CTNAG	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	192
BstFNI	CGCG	3 cut(s)	51, 61, 242
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	3 cut(s)	51, 61, 146
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 150, 180
BstUI	CGCG	3 cut(s)	51, 61, 242
BtrI	CACGTC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	192
CaiI	CAGNNNCTG	1 cut(s)	20
CciI	TCATGA	1 cut(s)	226
CfoI	GCGC	3 cut(s)	51, 61, 146
Cfr10I	RCCGGY	1 cut(s)	128
CseI	GACGC	2 cut(s)	50, 223
Csp6I	GTAC	2 cut(s)	80, 179
CviAII	CATG	2 cut(s)	112, 227
CviJI	RGCY	3 cut(s)	17, 26, 132
CviKI_1	RGCY	3 cut(s)	17, 26, 132
CviQI	GTAC	2 cut(s)	80, 179
DdeI	CTNAG	1 cut(s)	185
DinI	GGCGCC	1 cut(s)	145
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
FaeI	CATG	2 cut(s)	115, 230
FaiI	YATR	5 cut(s)	75, 113, 204, 221, 228
FatI	CATG	2 cut(s)	111, 226
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	1 cut(s)	57
GlaI	GCGC	3 cut(s)	50, 60, 145
GluI	GCNGC	1 cut(s)	57
GsaI	CCCAGC	1 cut(s)	17
GsuI	CTGGAG	1 cut(s)	42
HaeII	RGCGCY	1 cut(s)	147
HapII	CCGG	1 cut(s)	129
HgaI	GACGC	2 cut(s)	50, 223
HhaI	GCGC	3 cut(s)	51, 61, 146
Hin1I	GRCGYC	2 cut(s)	144, 234
Hin1II	CATG	2 cut(s)	115, 230
Hin6I	GCGC	3 cut(s)	49, 59, 144
HinP1I	GCGC	3 cut(s)	49, 59, 144
HincII	GTYRAC	2 cut(s)	65, 238
HindII	GTYRAC	2 cut(s)	65, 238
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	2 cut(s)	127, 151
Hpy166II	GTNNAC	3 cut(s)	65, 82, 238
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	4 cut(s)	21, 40, 95, 227
Hpy8I	GTNNAC	3 cut(s)	65, 82, 238
Hpy99I	CGWCG	4 cut(s)	152, 179, 239, 242
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4IV	ACGT	2 cut(s)	44, 177
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 150, 180
HpyF3I	CTNAG	1 cut(s)	185
HpySE526I	ACGT	2 cut(s)	44, 177
Hsp92I	GRCGYC	2 cut(s)	144, 234
Hsp92II	CATG	2 cut(s)	115, 230
HspAI	GCGC	3 cut(s)	49, 59, 144
KasI	GGCGCC	1 cut(s)	143
LmnI	GCTCC	3 cut(s)	23, 103, 171
LpnPI	CCDG	4 cut(s)	6, 27, 124, 142
LweI	GCATC	1 cut(s)	162
MaeII	ACGT	2 cut(s)	44, 177
MboII	GAAGA	1 cut(s)	148
MluCI	AATT	1 cut(s)	216
MluI	ACGCGT	1 cut(s)	240
Mly113I	GGCGCC	1 cut(s)	144
MnlI	CCTC	4 cut(s)	96, 172, 194, 206
MspI	CCGG	1 cut(s)	129
MvnI	CGCG	3 cut(s)	51, 61, 242
MwoI	GCNNNNNNNGC	3 cut(s)	23, 150, 180
NarI	GGCGCC	1 cut(s)	144
NlaIII	CATG	2 cut(s)	115, 230
NlaIV	GGNNCC	1 cut(s)	145
PagI	TCATGA	1 cut(s)	226
Pfl23II	CGTACG	1 cut(s)	178
PflMI	CCANNNNNTGG	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	58
PluTI	GGCGCC	1 cut(s)	147
PspFI	CCCAGC	1 cut(s)	13
PspLI	CGTACG	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	20
RsaI	GTAC	2 cut(s)	81, 180
RsaNI	GTAC	2 cut(s)	80, 179
SalI	GTCGAC	1 cut(s)	236
SatI	GCNGC	1 cut(s)	57
SetI	ASST	5 cut(s)	19, 28, 47, 164, 180
SfaNI	GCATC	1 cut(s)	162
SfoI	GGCGCC	1 cut(s)	145
SgrDI	CGTCGACG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	1 cut(s)	216
SsiI	CCGC	1 cut(s)	56
SspDI	GGCGCC	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	69
TaiI	ACGT	2 cut(s)	47, 180
TaqI	TCGA	1 cut(s)	237
TasI	AATT	1 cut(s)	216
TauI	GCSGC	1 cut(s)	59
Van91I	CCANNNNNTGG	1 cut(s)	20
XmiI	GTMKAC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.