Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0021668

Physical Location & Seq

Genomic Coordinates Reverse (-)

70085644 .. 70092498

Gene Structure 6855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00049710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGACTAATGAAGCCACAGAAGGCCTCAACCTCGCGTCCCTTGATCTCCCTCTCAACCTCGGATTGCCGTCTCCCCCTGCTTATCTCATTCGCACTAACCACTGGCAACCTGGTGGAGCTCTGACCGGCACCACCCTGTACTCGCTCCTCCCTCAAGCCCCATCCTATTTGGAGTTTTTCTATTGGAACCTTCAAATTTACTCACTTGATCTCTGTGCTTTTTACTCACTTGATTTCTATTGGAACCTTCAAATATTTACAAAATGTCCAAACCACCCTCCTCTCCTCTCTGAAATGAGTGAAATCTCACAACCCTCTCTTTCTAGTCCCTCACCTGATCCTTCCTCCTCTTCCTTCTTCATCTTCTTATATCCTCAAAATGCAAAAATCGAAACGGATAAACAATTGTGGGTACATTCCAATTGCCATATCATGTTAGCACCACCTTCTCTTTCCTCCACTCCTTGTACAACAACAATTCATTCAATTTTATCAAATCTTACTAACCCAAAAATTGAAGAACTAAACACCCTTCAATCGGAGCCGCCACTTAGCGGCTCCATGAAGCACACCTTCATCACTCCGATCCCACTCCACTACGACCGCAACCACGAGTCGTCCCTAAGGCAATGTGGCACAACTAAACCTTCGAGGTCACCGCATCGTCAAGCGGCCAGCCCGGTTCACCATGGACTAGCTCACCACCACGTTTTGCGCTCGCGAGCTTCCCGTCACCCTAGTTTGCACGACAAGGAGCAGAACATGGTGAAGCGGACCATCGGTTCCAACCGGGGCACCGTCGACATCTCCACCTCTCGTCCGGCACGGCGTGAGCCTCCGCGACTCCTCAAGCTCGGTGTGAAATCAATTATGGTTCACGATGGTGTCGACGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0006082 GO:0006807 GO:0006809 GO:0008150 GO:0008152 GO:0008940 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009703 GO:0009987 GO:0016020 GO:0016491 GO:0016661 GO:0017144 GO:0034641 GO:0042126 GO:0042128 GO:0042133 GO:0042136 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046209 GO:0046857 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0071941 GO:0071944 GO:0072593 GO:1903409 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00910 ko01120 map00910 map01120

Pfam Domains

Protein Families

Cyt-b5 FAD_binding_6 Mo-co_dimer NAD_binding_1 Oxidored_molyb

Protein Analysis

298

Amino Acids

33.3

Weight (kDa)

8.27

Isoelectric Point (pI)

70.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021668)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004467.1_g000052
rosa_roxburghii	Rroxscaffold_1G00049710 Rroxscaffold_5G00374650
rosa_samantha	Rh2BG246200 Rh7BG436000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	128, 794
AccI	GTMKAC	2 cut(s)	801, 888
AccII	CGCG	4 cut(s)	35, 721, 841, 893
AciI	CCGC	7 cut(s)	545, 555, 604, 659, 671, 772, 839
AclWI	GGATC	2 cut(s)	332, 580
AcoI	YGGCCR	1 cut(s)	672
AcsI	RAATTY	1 cut(s)	195
AdeI	CACNNNGTG	1 cut(s)	830
AfaI	GTAC	3 cut(s)	140, 414, 469
AfiI	CCNNNNNNNGG	2 cut(s)	538, 554
AflIII	ACRYGT	1 cut(s)	891
AgsI	TTSAA	5 cut(s)	194, 251, 486, 518, 536
AjnI	CCWGG	1 cut(s)	109
AleI	CACNNNNGTG	1 cut(s)	882
AloI	GAACNNNNNNTCC	2 cut(s)	766, 798
AluBI	AGCT	4 cut(s)	119, 698, 725, 853
AluI	AGCT	4 cut(s)	119, 698, 725, 853
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	2 cut(s)	332, 580
AoxI	GGCC	2 cut(s)	22, 672
ApoI	RAATTY	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	717
AspS9I	GGNCC	1 cut(s)	774
AsuC2I	CCSGG	2 cut(s)	680, 791
AsuHPI	GGTGA	6 cut(s)	324, 648, 677, 692, 725, 778
AvaII	GGWCC	1 cut(s)	774
AxyI	CCTNAGG	1 cut(s)	623
BaeGI	GKGCMC	1 cut(s)	797
BanI	GGYRCC	2 cut(s)	128, 794
BanII	GRGCYC	1 cut(s)	121
BauI	CACGAG	1 cut(s)	611
Bbv12I	GWGCWC	1 cut(s)	121
BccI	CCATC	3 cut(s)	169, 785, 875
BceAI	ACGGC	2 cut(s)	52, 842
BciT130I	CCWGG	1 cut(s)	111
BcnI	CCSGG	2 cut(s)	680, 791
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	3 cut(s)	324, 695, 738
BisI	GCNGC	3 cut(s)	545, 556, 672
BlsI	GCNGC	3 cut(s)	546, 557, 673
Bme1390I	CCNGG	3 cut(s)	111, 680, 791
Bme18I	GGWCC	1 cut(s)	774
BmgT120I	GGNCC	1 cut(s)	774
BmiI	GGNNCC	7 cut(s)	130, 188, 245, 543, 559, 784, 796
BmrFI	CCNGG	3 cut(s)	111, 680, 791
BmsI	GCATC	1 cut(s)	670
BpuEI	CTTGAG	2 cut(s)	138, 833
BpuMI	CCSGG	2 cut(s)	680, 791
BsaJI	CCNNGG	3 cut(s)	58, 688, 790
Bsc4I	CCNNNNNNNGG	2 cut(s)	538, 554
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	107
Bse21I	CCTNAGG	1 cut(s)	623
Bse3DI	GCAATG	1 cut(s)	635
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	3 cut(s)	58, 688, 790
BseGI	GGATG	1 cut(s)	161
BseLI	CCNNNNNNNGG	2 cut(s)	538, 554
BseMI	GCAATG	1 cut(s)	635
BseNI	ACTGG	1 cut(s)	107
BseRI	GAGGAG	5 cut(s)	137, 270, 275, 337, 836
BseSI	GKGCMC	1 cut(s)	797
Bsh1236I	CGCG	4 cut(s)	35, 721, 841, 893
Bsh1285I	CGRYCG	1 cut(s)	604
BshFI	GGCC	2 cut(s)	24, 674
BshNI	GGYRCC	2 cut(s)	128, 794
BsiEI	CGRYCG	1 cut(s)	604
BsiHKAI	GWGCWC	1 cut(s)	121
BsiSI	CCGG	4 cut(s)	126, 680, 790, 821
BslFI	GGGAC	3 cut(s)	22, 312, 604
BslI	CCNNNNNNNGG	2 cut(s)	538, 554
BsmAI	GTCTC	1 cut(s)	75
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	3 cut(s)	22, 312, 604
BsnI	GGCC	2 cut(s)	24, 674
Bsp1286I	GDGCHC	2 cut(s)	121, 797
Bsp1407I	TGTACA	1 cut(s)	467
Bsp143I	GATC	4 cut(s)	43, 208, 337, 585
Bsp19I	CCATGG	1 cut(s)	688
Bsp68I	TCGCGA	1 cut(s)	721
BspACI	CCGC	7 cut(s)	545, 555, 604, 659, 671, 772, 839
BspANI	GGCC	2 cut(s)	24, 674
BspFNI	CGCG	4 cut(s)	35, 721, 841, 893
BspLI	GGNNCC	7 cut(s)	130, 188, 245, 543, 559, 784, 796
BspPI	GGATC	2 cut(s)	332, 580
BspT107I	GGYRCC	2 cut(s)	128, 794
BsrDI	GCAATG	1 cut(s)	635
BsrFI	RCCGGY	1 cut(s)	125
BsrGI	TGTACA	1 cut(s)	467
BsrI	ACTGG	1 cut(s)	107
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	3 cut(s)	58, 688, 790
BssMI	GATC	4 cut(s)	43, 208, 337, 585
BssSI	CACGAG	1 cut(s)	611
BssT1I	CCWWGG	1 cut(s)	688
Bst2BI	CACGAG	1 cut(s)	611
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	799
Bst6I	CTCTTC	1 cut(s)	355
BstAUI	TGTACA	1 cut(s)	467
BstC8I	GCNNGC	3 cut(s)	676, 719, 723
BstDEI	CTNAG	2 cut(s)	551, 623
BstDSI	CCRYGG	1 cut(s)	688
BstEII	GGTNACC	1 cut(s)	654
BstF5I	GGATG	1 cut(s)	161
BstFNI	CGCG	4 cut(s)	35, 721, 841, 893
BstHHI	GCGC	1 cut(s)	717
BstKTI	GATC	4 cut(s)	46, 211, 340, 588
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	4 cut(s)	43, 208, 337, 585
BstMCI	CGRYCG	1 cut(s)	604
BstNI	CCWGG	1 cut(s)	111
BstPI	GGTNACC	1 cut(s)	654
BstSCI	CCNGG	3 cut(s)	109, 678, 789
BstSLI	GKGCMC	1 cut(s)	797
BstUI	CGCG	4 cut(s)	35, 721, 841, 893
Bsu36I	CCTNAGG	1 cut(s)	623
BsuRI	GGCC	2 cut(s)	24, 674
BtgI	CCRYGG	1 cut(s)	688
BtsCI	GGATG	1 cut(s)	161
BtsIMutI	CAGTG	1 cut(s)	100
BtuMI	TCGCGA	1 cut(s)	721
Cac8I	GCNNGC	3 cut(s)	676, 719, 723
CfoI	GCGC	1 cut(s)	717
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	774
CseI	GACGC	1 cut(s)	24
CsiI	ACCWGGT	1 cut(s)	109
Csp6I	GTAC	3 cut(s)	139, 413, 468
CviAII	CATG	4 cut(s)	433, 562, 689, 763
CviQI	GTAC	3 cut(s)	139, 413, 468
DdeI	CTNAG	2 cut(s)	551, 623
DpnI	GATC	4 cut(s)	45, 210, 339, 587
DpnII	GATC	4 cut(s)	43, 208, 337, 585
DraIII	CACNNNGTG	1 cut(s)	830
EaeI	YGGCCR	1 cut(s)	672
Eam1104I	CTCTTC	1 cut(s)	355
EarI	CTCTTC	1 cut(s)	355
Ecl136II	GAGCTC	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	688
Eco147I	AGGCCT	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	774
Eco53kI	GAGCTC	1 cut(s)	119
Eco81I	CCTNAGG	1 cut(s)	623
Eco91I	GGTNACC	1 cut(s)	654
EcoICRI	GAGCTC	1 cut(s)	119
EcoO65I	GGTNACC	1 cut(s)	654
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	688
EcoT38I	GRGCYC	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	688
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	4 cut(s)	436, 565, 692, 766
FaiI	YATR	7 cut(s)	370, 429, 434, 563, 690, 764, 872
FalI	AAGNNNNNCTT	2 cut(s)	557, 589
FaqI	GGGAC	3 cut(s)	22, 312, 604
FatI	CATG	4 cut(s)	432, 561, 688, 762
FblI	GTMKAC	2 cut(s)	801, 888
Fnu4HI	GCNGC	3 cut(s)	545, 556, 672
FokI	GGATG	1 cut(s)	148
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	3 cut(s)	545, 556, 672
FspBI	CTAG	3 cut(s)	324, 695, 738
GlaI	GCGC	1 cut(s)	716
GluI	GCNGC	3 cut(s)	545, 556, 672
HaeIII	GGCC	2 cut(s)	24, 674
HapII	CCGG	4 cut(s)	126, 680, 790, 821
HgaI	GACGC	1 cut(s)	24
HhaI	GCGC	1 cut(s)	717
Hin1II	CATG	4 cut(s)	436, 565, 692, 766
Hin6I	GCGC	1 cut(s)	715
HinP1I	GCGC	1 cut(s)	715
HincII	GTYRAC	2 cut(s)	802, 889
HindII	GTYRAC	2 cut(s)	802, 889
HinfI	GANTC	2 cut(s)	614, 843
HpaII	CCGG	4 cut(s)	126, 680, 790, 821
HphI	GGTGA	6 cut(s)	324, 648, 677, 692, 725, 778
Hpy166II	GTNNAC	4 cut(s)	685, 802, 877, 889
Hpy188I	TCNGA	5 cut(s)	62, 123, 292, 541, 585
Hpy188III	TCNNGA	2 cut(s)	720, 878
Hpy8I	GTNNAC	4 cut(s)	685, 802, 877, 889
Hpy99I	CGWCG	2 cut(s)	803, 893
HpyAV	CCTTC	9 cut(s)	14, 200, 257, 351, 364, 456, 542, 583, 657
HpyCH4III	ACNGT	1 cut(s)	799
HpyCH4IV	ACGT	1 cut(s)	708
HpyCH4V	TGCA	2 cut(s)	383, 745
HpyF3I	CTNAG	2 cut(s)	551, 623
HpySE526I	ACGT	1 cut(s)	708
Hsp92II	CATG	4 cut(s)	436, 565, 692, 766
HspAI	GCGC	1 cut(s)	715
Kzo9I	GATC	4 cut(s)	43, 208, 337, 585
LmnI	GCTCC	5 cut(s)	116, 150, 541, 563, 754
LweI	GCATC	1 cut(s)	670
MabI	ACCWGGT	1 cut(s)	109
MaeI	CTAG	3 cut(s)	324, 695, 738
MaeII	ACGT	1 cut(s)	708
MaeIII	GTNAC	2 cut(s)	654, 731
MalI	GATC	4 cut(s)	45, 210, 339, 587
MboI	GATC	4 cut(s)	43, 208, 337, 585
MboII	GAAGA	4 cut(s)	342, 349, 355, 530
MfeI	CAATTG	2 cut(s)	404, 421
MhlI	GDGCHC	2 cut(s)	121, 797
MluCI	AATT	7 cut(s)	195, 404, 421, 477, 486, 513, 867
MluI	ACGCGT	1 cut(s)	891
MlyI	GAGTC	2 cut(s)	623, 837
MmeI	TCCRAC	1 cut(s)	810
MslI	CAYNNNNRTG	1 cut(s)	882
MspI	CCGG	4 cut(s)	126, 680, 790, 821
MspR9I	CCNGG	3 cut(s)	111, 680, 791
MunI	CAATTG	2 cut(s)	404, 421
MvaI	CCWGG	1 cut(s)	111
MvnI	CGCG	4 cut(s)	35, 721, 841, 893
NciI	CCSGG	2 cut(s)	680, 791
NcoI	CCATGG	1 cut(s)	688
NdeII	GATC	4 cut(s)	43, 208, 337, 585
NlaIII	CATG	4 cut(s)	436, 565, 692, 766
NlaIV	GGNNCC	7 cut(s)	130, 188, 245, 543, 559, 784, 796
NmuCI	GTSAC	2 cut(s)	654, 731
NruI	TCGCGA	1 cut(s)	721
OliI	CACNNNNGTG	1 cut(s)	882
PceI	AGGCCT	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	1 cut(s)	885
PkrI	GCNGC	3 cut(s)	546, 557, 673
PleI	GAGTC	2 cut(s)	622, 837
PpsI	GAGTC	2 cut(s)	622, 837
Psp124BI	GAGCTC	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	109
PspEI	GGTNACC	1 cut(s)	654
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	7 cut(s)	130, 188, 245, 543, 559, 784, 796
PspPI	GGNCC	1 cut(s)	774
RruI	TCGCGA	1 cut(s)	721
RsaI	GTAC	3 cut(s)	140, 414, 469
RsaNI	GTAC	3 cut(s)	139, 413, 468
RseI	CAYNNNNRTG	1 cut(s)	882
SacI	GAGCTC	1 cut(s)	121
SalI	GTCGAC	2 cut(s)	800, 887
SatI	GCNGC	3 cut(s)	545, 556, 672
Sau3AI	GATC	4 cut(s)	43, 208, 337, 585
Sau96I	GGNCC	1 cut(s)	774
SchI	GAGTC	2 cut(s)	623, 837
ScrFI	CCNGG	3 cut(s)	111, 680, 791
SduI	GDGCHC	2 cut(s)	121, 797
SexAI	ACCWGGT	1 cut(s)	109
SfaNI	GCATC	1 cut(s)	670
SinI	GGWCC	1 cut(s)	774
SmiMI	CAYNNNNRTG	1 cut(s)	882
SmlI	CTYRAG	2 cut(s)	153, 848
SmoI	CTYRAG	2 cut(s)	153, 848
Sse9I	AATT	7 cut(s)	195, 404, 421, 477, 486, 513, 867
SseBI	AGGCCT	1 cut(s)	24
SsiI	CCGC	7 cut(s)	545, 555, 604, 659, 671, 772, 839
SspI	AATATT	1 cut(s)	255
SspMI	CTAG	3 cut(s)	324, 695, 738
SstI	GAGCTC	1 cut(s)	121
StuI	AGGCCT	1 cut(s)	24
StyD4I	CCNGG	3 cut(s)	109, 678, 789
StyI	CCWWGG	1 cut(s)	688
TaaI	ACNGT	1 cut(s)	799
TaiI	ACGT	1 cut(s)	711
TaqI	TCGA	4 cut(s)	390, 650, 801, 888
TasI	AATT	7 cut(s)	195, 404, 421, 477, 486, 513, 867
TatI	WGTACW	2 cut(s)	138, 467
TauI	GCSGC	3 cut(s)	547, 558, 674
TscAI	CASTG	1 cut(s)	107
TseFI	GTSAC	2 cut(s)	654, 731
Tsp45I	GTSAC	2 cut(s)	654, 731
TspDTI	ATGAA	5 cut(s)	24, 349, 470, 565, 578
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	774
XapI	RAATTY	1 cut(s)	195
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XmiI	GTMKAC	2 cut(s)	801, 888
XspI	CTAG	3 cut(s)	324, 695, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.