Rroxscaffold_5G00374650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0021668
Physical Location & Seq
Reverse (-)
55671574 .. 55671879
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00374650.1

Sequence Viewer

Length: 306 bp
ATGAACCGCGGCTTCATCACTCGGTTTACATCCCTAAGGCAATGTGGCACAACCGGACCATCAAGGTCACCAAGATCGTCAAGTGGCCGGCCAGTTCACCATGGACTAGCTCACCACCGAGTTTCGGGATCGCGAGCTCCCTATCACCCTAGTTTGCACGGCAAGGAGCAGAACATGATGAAGCGGACCATTGGTTTCAACCGGGGCACCGCCGCATCTCCACCTTCGTCGGCGGGCGTGAACCTCCGCGACTCCTCGAAGCTCGGTGTGAAATTAATTATGGTTCACGATGGTGTTGGTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

10.8

Weight (kDa)

11.93

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021668)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004467.1_g000052
rosa_roxburghii Rroxscaffold_1G00049710 Rroxscaffold_5G00374650
rosa_samantha Rh2BG246200 Rh7BG436000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 206
AccII CGCG 3 cut(s) 9, 133, 249
AciI CCGC 7 cut(s) 7, 9, 184, 210, 213, 233, 247
AclWI GGATC 1 cut(s) 136
AcoI YGGCCR 2 cut(s) 85, 89
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 1 cut(s) 199
AleI CACNNNNGTG 1 cut(s) 291
AluBI AGCT 3 cut(s) 110, 137, 262
AluI AGCT 3 cut(s) 110, 137, 262
Alw21I GWGCWC 1 cut(s) 139
AlwI GGATC 1 cut(s) 136
AoxI GGCC 2 cut(s) 85, 89
AseI ATTAAT 1 cut(s) 275
AspS9I GGNCC 2 cut(s) 56, 186
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 4 cut(s) 60, 89, 104, 137
AvaII GGWCC 2 cut(s) 56, 186
AxyI CCTNAGG 1 cut(s) 35
BaeGI GKGCMC 1 cut(s) 209
BanI GGYRCC 1 cut(s) 206
BanII GRGCYC 1 cut(s) 139
Bbv12I GWGCWC 1 cut(s) 139
BccI CCATC 2 cut(s) 67, 284
BceAI ACGGC 1 cut(s) 175
BcnI CCSGG 1 cut(s) 203
BfaI CTAG 2 cut(s) 107, 150
BisI GCNGC 2 cut(s) 10, 213
BlsI GCNGC 2 cut(s) 11, 214
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 2 cut(s) 56, 186
BmgT120I GGNCC 2 cut(s) 56, 186
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 203
BmsI GCATC 1 cut(s) 224
BpuMI CCSGG 1 cut(s) 203
BsaJI CCNNGG 3 cut(s) 7, 100, 202
BsaWI WCCGGW 1 cut(s) 53
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse118I RCCGGY 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 92
Bse21I CCTNAGG 1 cut(s) 35
Bse3DI GCAATG 1 cut(s) 47
BseDI CCNNGG 3 cut(s) 7, 100, 202
BseGI GGATG 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMI GCAATG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 244
BseSI GKGCMC 1 cut(s) 209
Bsh1236I CGCG 3 cut(s) 9, 133, 249
BshFI GGCC 2 cut(s) 87, 91
BshNI GGYRCC 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 3 cut(s) 54, 88, 202
BslI CCNNNNNNNGG 1 cut(s) 124
BsnI GGCC 2 cut(s) 87, 91
Bsp1286I GDGCHC 2 cut(s) 139, 209
Bsp143I GATC 2 cut(s) 74, 128
Bsp19I CCATGG 1 cut(s) 100
Bsp68I TCGCGA 1 cut(s) 133
BspACI CCGC 7 cut(s) 7, 9, 184, 210, 213, 233, 247
BspANI GGCC 2 cut(s) 87, 91
BspFNI CGCG 3 cut(s) 9, 133, 249
BspLI GGNNCC 1 cut(s) 208
BspPI GGATC 1 cut(s) 136
BspT107I GGYRCC 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 47
BsrFI RCCGGY 1 cut(s) 87
BsrI ACTGG 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 87
BssECI CCNNGG 3 cut(s) 7, 100, 202
BssMI GATC 2 cut(s) 74, 128
BssT1I CCWWGG 1 cut(s) 100
BstC8I GCNNGC 3 cut(s) 89, 135, 235
BstDEI CTNAG 1 cut(s) 35
BstDSI CCRYGG 2 cut(s) 7, 100
BstEII GGTNACC 1 cut(s) 66
BstF5I GGATG 1 cut(s) 29
BstFNI CGCG 3 cut(s) 9, 133, 249
BstKTI GATC 2 cut(s) 77, 131
BstMBI GATC 2 cut(s) 74, 128
BstPI GGTNACC 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 201
BstSLI GKGCMC 1 cut(s) 209
BstUI CGCG 3 cut(s) 9, 133, 249
Bsu36I CCTNAGG 1 cut(s) 35
BsuRI GGCC 2 cut(s) 87, 91
BtgI CCRYGG 2 cut(s) 7, 100
BtsCI GGATG 1 cut(s) 29
BtuMI TCGCGA 1 cut(s) 133
Cac8I GCNNGC 3 cut(s) 89, 135, 235
Cfr10I RCCGGY 1 cut(s) 87
Cfr13I GGNCC 2 cut(s) 56, 186
Cfr42I CCGCGG 1 cut(s) 10
CviAII CATG 2 cut(s) 101, 175
CviJI RGCY 6 cut(s) 12, 87, 91, 110, 137, 262
CviKI_1 RGCY 6 cut(s) 12, 87, 91, 110, 137, 262
DdeI CTNAG 1 cut(s) 35
DpnI GATC 2 cut(s) 76, 130
DpnII GATC 2 cut(s) 74, 128
EaeI YGGCCR 2 cut(s) 85, 89
Ecl136II GAGCTC 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 139
Eco47I GGWCC 2 cut(s) 56, 186
Eco53kI GAGCTC 1 cut(s) 137
Eco81I CCTNAGG 1 cut(s) 35
Eco91I GGTNACC 1 cut(s) 66
EcoICRI GAGCTC 1 cut(s) 137
EcoO65I GGTNACC 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 2 cut(s) 104, 178
FaiI YATR 3 cut(s) 102, 176, 281
FatI CATG 2 cut(s) 100, 174
FauI CCCGC 1 cut(s) 226
Fnu4HI GCNGC 2 cut(s) 10, 213
FokI GGATG 1 cut(s) 16
FriOI GRGCYC 1 cut(s) 139
FseI GGCCGGCC 1 cut(s) 91
Fsp4HI GCNGC 2 cut(s) 10, 213
FspBI CTAG 2 cut(s) 107, 150
GluI GCNGC 2 cut(s) 10, 213
HaeIII GGCC 2 cut(s) 87, 91
HapII CCGG 3 cut(s) 54, 88, 202
Hin1II CATG 2 cut(s) 104, 178
HinfI GANTC 1 cut(s) 251
HpaII CCGG 3 cut(s) 54, 88, 202
HphI GGTGA 4 cut(s) 60, 89, 104, 137
Hpy166II GTNNAC 4 cut(s) 27, 97, 241, 286
Hpy188III TCNNGA 3 cut(s) 126, 132, 287
Hpy8I GTNNAC 4 cut(s) 27, 97, 241, 286
Hpy99I CGWCG 1 cut(s) 232
HpyAV CCTTC 1 cut(s) 234
HpyCH4V TGCA 1 cut(s) 157
HpyF3I CTNAG 1 cut(s) 35
Hsp92II CATG 2 cut(s) 104, 178
KroI GCCGGC 1 cut(s) 87
KroNI GCCGGC 1 cut(s) 89
KspI CCGCGG 1 cut(s) 10
Kzo9I GATC 2 cut(s) 74, 128
LmnI GCTCC 2 cut(s) 142, 166
LpnPI CCDG 4 cut(s) 67, 101, 105, 215
LweI GCATC 1 cut(s) 224
MaeI CTAG 2 cut(s) 107, 150
MaeIII GTNAC 1 cut(s) 66
MalI GATC 2 cut(s) 76, 130
MboI GATC 2 cut(s) 74, 128
MhlI GDGCHC 2 cut(s) 139, 209
MluCI AATT 2 cut(s) 272, 276
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 2 cut(s) 254, 265
MroNI GCCGGC 1 cut(s) 87
MseI TTAA 1 cut(s) 275
MslI CAYNNNNRTG 1 cut(s) 291
MspA1I CMGCKG 1 cut(s) 9
MspI CCGG 3 cut(s) 54, 88, 202
MspR9I CCNGG 1 cut(s) 203
MvnI CGCG 3 cut(s) 9, 133, 249
NaeI GCCGGC 1 cut(s) 89
NciI CCSGG 1 cut(s) 203
NcoI CCATGG 1 cut(s) 100
NdeII GATC 2 cut(s) 74, 128
NgoMIV GCCGGC 1 cut(s) 87
NlaIII CATG 2 cut(s) 104, 178
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 66
NruI TCGCGA 1 cut(s) 133
OliI CACNNNNGTG 1 cut(s) 291
PdiI GCCGGC 1 cut(s) 89
PkrI GCNGC 2 cut(s) 11, 214
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
PshBI ATTAAT 1 cut(s) 275
Psp124BI GAGCTC 1 cut(s) 139
PspEI GGTNACC 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 2 cut(s) 56, 186
RigI GGCCGGCC 1 cut(s) 91
RruI TCGCGA 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 291
SacI GAGCTC 1 cut(s) 139
SacII CCGCGG 1 cut(s) 10
SaqAI TTAA 1 cut(s) 275
SatI GCNGC 2 cut(s) 10, 213
Sau3AI GATC 2 cut(s) 74, 128
Sau96I GGNCC 2 cut(s) 56, 186
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 203
SduI GDGCHC 2 cut(s) 139, 209
SetI ASST 6 cut(s) 68, 112, 139, 226, 246, 264
SfaNI GCATC 1 cut(s) 224
Sfr303I CCGCGG 1 cut(s) 10
SgrBI CCGCGG 1 cut(s) 10
SinI GGWCC 2 cut(s) 56, 186
SmiMI CAYNNNNRTG 1 cut(s) 291
Sse9I AATT 2 cut(s) 272, 276
SsiI CCGC 7 cut(s) 7, 9, 184, 210, 213, 233, 247
SspMI CTAG 2 cut(s) 107, 150
SstI GAGCTC 1 cut(s) 139
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 100
TaqI TCGA 1 cut(s) 257
TasI AATT 2 cut(s) 272, 276
TauI GCSGC 2 cut(s) 12, 215
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TseFI GTSAC 1 cut(s) 66
Tsp45I GTSAC 1 cut(s) 66
TspDTI ATGAA 3 cut(s) 4, 17, 194
VpaK11BI GGWCC 2 cut(s) 56, 186
VspI ATTAAT 1 cut(s) 275
XspI CTAG 2 cut(s) 107, 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.