Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0021668

Physical Location & Seq

Genomic Coordinates Forward (+)

50040572 .. 50042328

Gene Structure 1757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG436000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAACCATGGCTTCATCACTCCGGTCCCACTCCACTACGGCCGCAACCACGGCGTCGTCCCTAAGGCAACGTGGCACAACTGGACCGTCAAGGTCACCGGCATCGTCAAGCGGCCCTCCCAGTTCACCATGGACCAGCTCACCACCGAGTTTCGCGCTCGCGAGCTCCCCGCTCCCCGTCACCCTAGTTTGCACAGCAAGGAGCAGAACATGGTGAAGCAGACCATCGGTTTCAATTGGGGCGCCGCCGACATCTCCACCTCTGTCTGGCGCGGCGTGAGCCTCCGCGACTCCTCAAGCTCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0006082 GO:0006807 GO:0006809 GO:0008150 GO:0008152 GO:0008940 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009703 GO:0009987 GO:0016020 GO:0016491 GO:0016661 GO:0017144 GO:0034641 GO:0042126 GO:0042128 GO:0042133 GO:0042136 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046209 GO:0046857 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0071941 GO:0071944 GO:0072593 GO:1903409 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00910 ko01120 map00910 map01120

Pfam Domains

Protein Families

Cyt-b5 FAD_binding_6 Mo-co_dimer NAD_binding_1 Oxidored_molyb

Protein Analysis

102

Amino Acids

11.51

Weight (kDa)

10.58

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_molyb	PF00174	17 - 97	4e-13	Oxidoreductase molybdopterin binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021668)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004467.1_g000052
rosa_roxburghii	Rroxscaffold_1G00049710 Rroxscaffold_5G00374650
rosa_samantha	Rh2BG246200 Rh7BG436000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	242
AccBSI	CCGCTC	1 cut(s)	173
AccII	CGCG	4 cut(s)	156, 162, 273, 288
AciI	CCGC	6 cut(s)	43, 112, 171, 246, 273, 286
AcoI	YGGCCR	1 cut(s)	40
AcyI	GRCGYC	2 cut(s)	54, 243
AfiI	CCNNNNNNNGG	1 cut(s)	267
AgsI	TTSAA	1 cut(s)	235
AluBI	AGCT	3 cut(s)	139, 166, 300
AluI	AGCT	3 cut(s)	139, 166, 300
Alw21I	GWGCWC	1 cut(s)	168
AoxI	GGCC	2 cut(s)	40, 113
AspLEI	GCGC	3 cut(s)	158, 245, 273
AspS9I	GGNCC	4 cut(s)	25, 84, 114, 133
AsuHPI	GGTGA	5 cut(s)	88, 118, 133, 173, 226
AvaII	GGWCC	3 cut(s)	25, 84, 133
AxyI	CCTNAGG	1 cut(s)	63
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	168
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	2 cut(s)	55, 67
BfaI	CTAG	1 cut(s)	186
BfoI	RGCGCY	1 cut(s)	246
BisI	GCNGC	4 cut(s)	43, 113, 246, 274
BlsI	GCNGC	4 cut(s)	44, 114, 247, 275
Bme18I	GGWCC	3 cut(s)	25, 84, 133
BmgT120I	GGNCC	4 cut(s)	25, 84, 114, 133
BmiI	GGNNCC	2 cut(s)	27, 244
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	111
BmuI	ACTGGG	1 cut(s)	115
BpuEI	CTTGAG	1 cut(s)	280
BsaHI	GRCGYC	2 cut(s)	54, 243
BsaJI	CCNNGG	3 cut(s)	7, 49, 129
BsaWI	WCCGGW	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	2 cut(s)	86, 121
Bse21I	CCTNAGG	1 cut(s)	63
BseDI	CCNNGG	3 cut(s)	7, 49, 129
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseNI	ACTGG	2 cut(s)	86, 121
BseRI	GAGGAG	1 cut(s)	283
BseX3I	CGGCCG	1 cut(s)	40
Bsh1236I	CGCG	4 cut(s)	156, 162, 273, 288
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	42, 115
BshNI	GGYRCC	1 cut(s)	242
BsiEI	CGRYCG	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	2 cut(s)	23, 99
BslFI	GGGAC	2 cut(s)	11, 44
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmFI	GGGAC	2 cut(s)	11, 44
BsnI	GGCC	2 cut(s)	42, 115
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp19I	CCATGG	2 cut(s)	7, 129
Bsp68I	TCGCGA	1 cut(s)	162
BspACI	CCGC	6 cut(s)	43, 112, 171, 246, 273, 286
BspANI	GGCC	2 cut(s)	42, 115
BspFNI	CGCG	4 cut(s)	156, 162, 273, 288
BspLI	GGNNCC	2 cut(s)	27, 244
BspT107I	GGYRCC	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	86, 121
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	3 cut(s)	7, 49, 129
BssNI	GRCGYC	2 cut(s)	54, 243
BssT1I	CCWWGG	2 cut(s)	7, 129
Bst4CI	ACNGT	1 cut(s)	88
BstACI	GRCGYC	2 cut(s)	54, 243
BstC8I	GCNNGC	2 cut(s)	160, 164
BstDEI	CTNAG	2 cut(s)	63, 301
BstDSI	CCRYGG	3 cut(s)	7, 49, 129
BstEII	GGTNACC	1 cut(s)	94
BstFNI	CGCG	4 cut(s)	156, 162, 273, 288
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	3 cut(s)	158, 245, 273
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 279
BstPI	GGTNACC	1 cut(s)	94
BstUI	CGCG	4 cut(s)	156, 162, 273, 288
BstZI	CGGCCG	1 cut(s)	40
Bsu36I	CCTNAGG	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	42, 115
BtgI	CCRYGG	3 cut(s)	7, 49, 129
BtsIMutI	CAGTG	1 cut(s)	309
BtuMI	TCGCGA	1 cut(s)	162
Cac8I	GCNNGC	2 cut(s)	160, 164
CfoI	GCGC	3 cut(s)	158, 245, 273
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	4 cut(s)	25, 84, 114, 133
CseI	GACGC	1 cut(s)	43
CviAII	CATG	3 cut(s)	8, 130, 211
CviJI	RGCY	7 cut(s)	12, 42, 115, 139, 166, 282, 300
CviKI_1	RGCY	7 cut(s)	12, 42, 115, 139, 166, 282, 300
DdeI	CTNAG	2 cut(s)	63, 301
DinI	GGCGCC	1 cut(s)	244
EaeI	YGGCCR	1 cut(s)	40
EagI	CGGCCG	1 cut(s)	40
Ecl136II	GAGCTC	1 cut(s)	166
EclXI	CGGCCG	1 cut(s)	40
Eco130I	CCWWGG	2 cut(s)	7, 129
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	3 cut(s)	25, 84, 133
Eco52I	CGGCCG	1 cut(s)	40
Eco53kI	GAGCTC	1 cut(s)	166
Eco81I	CCTNAGG	1 cut(s)	63
Eco91I	GGTNACC	1 cut(s)	94
EcoICRI	GAGCTC	1 cut(s)	166
EcoO65I	GGTNACC	1 cut(s)	94
EcoT14I	CCWWGG	2 cut(s)	7, 129
EcoT38I	GRGCYC	1 cut(s)	168
EgeI	GGCGCC	1 cut(s)	244
EheI	GGCGCC	1 cut(s)	244
ErhI	CCWWGG	2 cut(s)	7, 129
FaeI	CATG	3 cut(s)	11, 133, 214
FaiI	YATR	3 cut(s)	9, 131, 212
FaqI	GGGAC	2 cut(s)	11, 44
FatI	CATG	3 cut(s)	7, 129, 210
FauI	CCCGC	1 cut(s)	178
Fnu4HI	GCNGC	4 cut(s)	43, 113, 246, 274
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	4 cut(s)	43, 113, 246, 274
FspBI	CTAG	1 cut(s)	186
GlaI	GCGC	3 cut(s)	157, 244, 272
GluI	GCNGC	4 cut(s)	43, 113, 246, 274
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	42, 115
HapII	CCGG	2 cut(s)	23, 99
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	3 cut(s)	158, 245, 273
Hin1I	GRCGYC	2 cut(s)	54, 243
Hin1II	CATG	3 cut(s)	11, 133, 214
Hin6I	GCGC	3 cut(s)	156, 243, 271
HinP1I	GCGC	3 cut(s)	156, 243, 271
HinfI	GANTC	1 cut(s)	290
HpaII	CCGG	2 cut(s)	23, 99
HphI	GGTGA	5 cut(s)	88, 118, 133, 173, 226
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	1 cut(s)	126
Hpy99I	CGWCG	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	1 cut(s)	193
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 279
HpyF3I	CTNAG	2 cut(s)	63, 301
HpySE526I	ACGT	1 cut(s)	71
Hsp92I	GRCGYC	2 cut(s)	54, 243
Hsp92II	CATG	3 cut(s)	11, 133, 214
HspAI	GCGC	3 cut(s)	156, 243, 271
KasI	GGCGCC	1 cut(s)	242
LmnI	GCTCC	3 cut(s)	171, 178, 202
LpnPI	CCDG	6 cut(s)	36, 67, 112, 134, 149, 253
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	186
MaeII	ACGT	1 cut(s)	71
MaeIII	GTNAC	2 cut(s)	94, 179
MbiI	CCGCTC	1 cut(s)	173
MfeI	CAATTG	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	1 cut(s)	235
Mly113I	GGCGCC	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	284
MnlI	CCTC	4 cut(s)	127, 271, 293, 304
MspI	CCGG	2 cut(s)	23, 99
MunI	CAATTG	1 cut(s)	235
MvnI	CGCG	4 cut(s)	156, 162, 273, 288
MwoI	GCNNNNNNNGC	2 cut(s)	51, 279
NarI	GGCGCC	1 cut(s)	243
NcoI	CCATGG	2 cut(s)	7, 129
NlaIII	CATG	3 cut(s)	11, 133, 214
NlaIV	GGNNCC	2 cut(s)	27, 244
NmuCI	GTSAC	2 cut(s)	94, 179
NruI	TCGCGA	1 cut(s)	162
PkrI	GCNGC	4 cut(s)	44, 114, 247, 275
PleI	GAGTC	1 cut(s)	284
PluTI	GGCGCC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	284
Psp124BI	GAGCTC	1 cut(s)	168
PspEI	GGTNACC	1 cut(s)	94
PspN4I	GGNNCC	2 cut(s)	27, 244
PspPI	GGNCC	4 cut(s)	25, 84, 114, 133
RruI	TCGCGA	1 cut(s)	162
SacI	GAGCTC	1 cut(s)	168
SatI	GCNGC	4 cut(s)	43, 113, 246, 274
Sau96I	GGNCC	4 cut(s)	25, 84, 114, 133
SchI	GAGTC	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	6 cut(s)	74, 96, 141, 168, 263, 302
SfaNI	GCATC	1 cut(s)	111
SfoI	GGCGCC	1 cut(s)	244
SinI	GGWCC	3 cut(s)	25, 84, 133
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
Sse9I	AATT	1 cut(s)	235
SsiI	CCGC	6 cut(s)	43, 112, 171, 246, 273, 286
SspDI	GGCGCC	1 cut(s)	242
SspMI	CTAG	1 cut(s)	186
SstI	GAGCTC	1 cut(s)	168
StyI	CCWWGG	2 cut(s)	7, 129
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	1 cut(s)	74
TasI	AATT	1 cut(s)	235
TauI	GCSGC	4 cut(s)	45, 115, 248, 276
TscAI	CASTG	1 cut(s)	309
TseFI	GTSAC	2 cut(s)	94, 179
Tsp45I	GTSAC	2 cut(s)	94, 179
TspDTI	ATGAA	2 cut(s)	4, 17
TspRI	CASTG	1 cut(s)	309
VpaK11BI	GGWCC	3 cut(s)	25, 84, 133
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.