Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004467.1

Orthogroup ID

OG0021668

Physical Location & Seq

Genomic Coordinates Forward (+)

188941 .. 189321

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

atgcttcagttcccagcttctggagcttctgatgtcatcttgacgtggcgcgtggcggcgcgtcaactgtggtatggggtacaccctcgttttcacgacaaggagcagaacatggtgaagcagaccaccggcttcaactggggcgccgtcggcatcttcacctctgtttggagcgacgtacgcctcagcgacatcctcaagcatagtgtgaaatcaattatgggtcatgatggcgtcgacgcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0006082 GO:0006807 GO:0006809 GO:0008150 GO:0008152 GO:0008940 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009703 GO:0009987 GO:0016020 GO:0016491 GO:0016661 GO:0017144 GO:0034641 GO:0042126 GO:0042128 GO:0042133 GO:0042136 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046209 GO:0046857 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0071941 GO:0071944 GO:0072593 GO:1903409 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00910 ko01120 map00910 map01120

Pfam Domains

Protein Families

Cyt-b5 FAD_binding_6 Mo-co_dimer NAD_binding_1 Oxidored_molyb

Protein Analysis

81

Amino Acids

9.1

Weight (kDa)

8.21

Isoelectric Point (pI)

16.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021668)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004467.1_g000052
rosa_roxburghii	Rroxscaffold_1G00049710 Rroxscaffold_5G00374650
rosa_samantha	Rh2BG246200 Rh7BG436000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	143
AccB7I	CCANNNNNTGG	1 cut(s)	20
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	3 cut(s)	51, 61, 242
AciI	CCGC	1 cut(s)	56
AcyI	GRCGYC	2 cut(s)	144, 234
AfaI	GTAC	2 cut(s)	81, 180
AfiI	CCNNNNNNNGG	2 cut(s)	20, 168
AflIII	ACRYGT	1 cut(s)	240
AgsI	TTSAA	1 cut(s)	136
AjiI	CACGTC	1 cut(s)	45
AluBI	AGCT	2 cut(s)	17, 26
AluI	AGCT	2 cut(s)	17, 26
AlwNI	CAGNNNCTG	1 cut(s)	20
AspLEI	GCGC	3 cut(s)	51, 61, 146
AsuHPI	GGTGA	2 cut(s)	127, 151
BanI	GGYRCC	1 cut(s)	143
BbvCI	CCTCAGC	1 cut(s)	185
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	1 cut(s)	131
BfoI	RGCGCY	1 cut(s)	147
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
BmgBI	CACGTC	1 cut(s)	45
BmiI	GGNNCC	1 cut(s)	145
BmrI	ACTGGG	1 cut(s)	148
BmsI	GCATC	1 cut(s)	162
BmuI	ACTGGG	1 cut(s)	148
BpmI	CTGGAG	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	182
BsaHI	GRCGYC	2 cut(s)	144, 234
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 168
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	143
BseGI	GGATG	1 cut(s)	192
BseLI	CCNNNNNNNGG	2 cut(s)	20, 168
BseMII	CTCAG	1 cut(s)	199
BseNI	ACTGG	1 cut(s)	143
BseYI	CCCAGC	1 cut(s)	13
Bsh1236I	CGCG	3 cut(s)	51, 61, 242
BshNI	GGYRCC	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	129
BsiWI	CGTACG	1 cut(s)	178
BslI	CCNNNNNNNGG	2 cut(s)	20, 168
BspACI	CCGC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	198
BspFNI	CGCG	3 cut(s)	51, 61, 242
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	145
BspT107I	GGYRCC	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	128
BssNI	GRCGYC	2 cut(s)	144, 234
Bst4CI	ACNGT	1 cut(s)	69
BstACI	GRCGYC	2 cut(s)	144, 234
BstDEI	CTNAG	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	192
BstFNI	CGCG	3 cut(s)	51, 61, 242
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	3 cut(s)	51, 61, 146
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 150, 180
BstUI	CGCG	3 cut(s)	51, 61, 242
BtrI	CACGTC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	192
CaiI	CAGNNNCTG	1 cut(s)	20
CciI	TCATGA	1 cut(s)	226
CfoI	GCGC	3 cut(s)	51, 61, 146
Cfr10I	RCCGGY	1 cut(s)	128
CseI	GACGC	2 cut(s)	50, 223
Csp6I	GTAC	2 cut(s)	80, 179
CviAII	CATG	2 cut(s)	112, 227
CviJI	RGCY	3 cut(s)	17, 26, 132
CviKI_1	RGCY	3 cut(s)	17, 26, 132
CviQI	GTAC	2 cut(s)	80, 179
DdeI	CTNAG	1 cut(s)	185
DinI	GGCGCC	1 cut(s)	145
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
FaeI	CATG	2 cut(s)	115, 230
FaiI	YATR	5 cut(s)	75, 113, 204, 221, 228
FatI	CATG	2 cut(s)	111, 226
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	1 cut(s)	57
GlaI	GCGC	3 cut(s)	50, 60, 145
GluI	GCNGC	1 cut(s)	57
GsaI	CCCAGC	1 cut(s)	17
GsuI	CTGGAG	1 cut(s)	42
HaeII	RGCGCY	1 cut(s)	147
HapII	CCGG	1 cut(s)	129
HgaI	GACGC	2 cut(s)	50, 223
HhaI	GCGC	3 cut(s)	51, 61, 146
Hin1I	GRCGYC	2 cut(s)	144, 234
Hin1II	CATG	2 cut(s)	115, 230
Hin6I	GCGC	3 cut(s)	49, 59, 144
HinP1I	GCGC	3 cut(s)	49, 59, 144
HincII	GTYRAC	2 cut(s)	65, 238
HindII	GTYRAC	2 cut(s)	65, 238
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	2 cut(s)	127, 151
Hpy166II	GTNNAC	3 cut(s)	65, 82, 238
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	4 cut(s)	21, 40, 95, 227
Hpy8I	GTNNAC	3 cut(s)	65, 82, 238
Hpy99I	CGWCG	4 cut(s)	152, 179, 239, 242
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4IV	ACGT	2 cut(s)	44, 177
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 150, 180
HpyF3I	CTNAG	1 cut(s)	185
HpySE526I	ACGT	2 cut(s)	44, 177
Hsp92I	GRCGYC	2 cut(s)	144, 234
Hsp92II	CATG	2 cut(s)	115, 230
HspAI	GCGC	3 cut(s)	49, 59, 144
KasI	GGCGCC	1 cut(s)	143
LmnI	GCTCC	3 cut(s)	23, 103, 171
LpnPI	CCDG	4 cut(s)	6, 27, 124, 142
LweI	GCATC	1 cut(s)	162
MaeII	ACGT	2 cut(s)	44, 177
MboII	GAAGA	1 cut(s)	148
MluCI	AATT	1 cut(s)	216
MluI	ACGCGT	1 cut(s)	240
Mly113I	GGCGCC	1 cut(s)	144
MnlI	CCTC	4 cut(s)	96, 172, 194, 206
MspI	CCGG	1 cut(s)	129
MvnI	CGCG	3 cut(s)	51, 61, 242
MwoI	GCNNNNNNNGC	3 cut(s)	23, 150, 180
NarI	GGCGCC	1 cut(s)	144
NlaIII	CATG	2 cut(s)	115, 230
NlaIV	GGNNCC	1 cut(s)	145
PagI	TCATGA	1 cut(s)	226
Pfl23II	CGTACG	1 cut(s)	178
PflMI	CCANNNNNTGG	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	58
PluTI	GGCGCC	1 cut(s)	147
PspFI	CCCAGC	1 cut(s)	13
PspLI	CGTACG	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	20
RsaI	GTAC	2 cut(s)	81, 180
RsaNI	GTAC	2 cut(s)	80, 179
SalI	GTCGAC	1 cut(s)	236
SatI	GCNGC	1 cut(s)	57
SetI	ASST	5 cut(s)	19, 28, 47, 164, 180
SfaNI	GCATC	1 cut(s)	162
SfoI	GGCGCC	1 cut(s)	145
SgrDI	CGTCGACG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	1 cut(s)	216
SsiI	CCGC	1 cut(s)	56
SspDI	GGCGCC	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	69
TaiI	ACGT	2 cut(s)	47, 180
TaqI	TCGA	1 cut(s)	237
TasI	AATT	1 cut(s)	216
TauI	GCSGC	1 cut(s)	59
Van91I	CCANNNNNTGG	1 cut(s)	20
XmiI	GTMKAC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.