Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004708.1

Orthogroup ID

OG0010259

Physical Location & Seq

Genomic Coordinates Forward (+)

57169 .. 67683

Gene Structure 10515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004708.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3240 bp

atgttctccaggtcccagcagagatcgtcaatctcgccgttccggtcccggaagtcgccggcgccgtccaagcctcacgtgcgtcccgccacgccttcgtctcgaccgccgtccaagccctctgtctcgccggcctccgcctccagcttgagcccgccggcgccgcccgatgtctccaagtccaaggagaatgtcaccgtcaccgttaggtttcgccccctcagtgctcgggagattaacaaaggggacgagattgcgtggtacgcagatggggactatacagtgaggaatgagttcaattctaacattgcttatggctttgatagggtttttggtccagcaacgacgacacgccatgtatatgatattgcggcgcagcaagttgtcagtggtgttatgcaagggattaatggtactgtatttgcatatggtgttactagtagtgggaagacgcatacaatgcatggggagcagaagtcacctggtgttattccactggcagtgaaggatgtgtttggaattatacaagagacacctgggcgagagtttcttcttcgtgtttcatatcttgaaatttacaatgagggggagcagaagtcacctggtgttattccactggcagtgaaggatgtgtttggaattatacaagagacacctgggcgagagtttcttcttcgtgtttcatatcttgaaatttacaatgaggtcataaacgacttacttgatccaacaggacagaacctacgaatcagagaggatgctcagggaacttatgttgaaggaatcaaagaggaagttgttttgtctcctgctcatgctctttccttgatagcaaccggagaagagcatagacacgttggttctaacaattttaatctactaagcagtcgcagccacactatattcacattgactattgaaagcagtccgcgaggtgaaaatggagaagaagatgtcaccttgtcccagttgcacttaattgatcttgcaggatctgaaagttctaaaaccgaaacaactggattgaggagaaaggagggctcatacatcaataaaagcttgcttacacttggcactgtgatatctaaacttacagatgggaaggcaactcatgttccttatcgagattcaaaacttacccgtttgttgcagtcctccctcagtggtcatggtcgtatatctctcatttgcactctgacccctgcgtctagcaatactgaggagacgcacaacacactaaagtttgcacatcggagcaagtatgtggaaataaaagcggcccaaaataagattatcgatgaaaagtctcttatcaaaaagtatcaaagggaaattaccattttaaaggaagagcttcagcagttaaaacgtggcatgatggagactccaaatatacctgcatctactcaggaagacttggttaatttaaagcttcagctggaagctggtcaggtgagattgcggtcaagattggaagaggaggaagaagccaaggcagctttaatgggaagaatacaacgattgactaaactaatcttagtctccacaaaaaataccataccacatagcatatctttgcctagcaatagacggaggcattcatttggggaagatgagctagcatatctgcctgataaaaaacgggaatatgtgattgatgatgatgctctaagtcatgcttccgagctttcagtggaaggaagagatgatatcactaatcttgatgagttggtcaaggattacaaaagaaacagaagacgtggaatgctcggatggtttaaactgaaaactggattcacaataaccgatcaaatggatctccttcgtgagcaagtgaaaatgttagctggggaggtagcgttatgtacaagttctctgaaaagattgtccgagcaagcagctaccaacccagaagattcaaaactgagggaacaaatgcaaaagttgaaggatgaaattagtgaaaagaagtttcagatacgtgtcctagagcaacgcatgattggatcacttgagatgactccgcacaggtcaaacaatagtgaaatgtctcaggctttgtccaagcttacgactcagttaaatgagaaaacttttgaacttgagatcaagacagcagacaataggatacttcaggagcagctacagatgaagatttcagaaaactcagaaatgcaagagacaattctgctgctaagacaacagcttagttctaaagaaaagaacaatgatgaaagagatatgattgctccatgtgaagaaacctgtgctgatgaaaatacaccgaccagtgtgatgagcttaaacagaatcctttcccttgaggattccaaagagtgtaacaaagatgcatactttaattcccaaatccatgcacaggcttcgaaaatagaagatctaaagcaggagaaggtgatactgtctgaggaaaaggaggggcttgaagttcagaatctgaaactttcagaagaagcttcctatgccaaagagttggcttcagctgcagcagtggagcttagaaacttggctgaagaagtaacaaagctttcttatgaaaacgccaagctgactggtgaccttgctgctgcaaaagaggttcaatgccgatcaaactgttgccaaaggtctacttcatatgatttcaagaaaaatagcacaaatggggctcgagctaatggattccataaaaggtcggaggatgaagttttggttgaggagctgcagaaggaacttactgcaagatgtcaaagagaagctgctctggagaaagaagtatatgagagagatcagttagaagatgatttacgaaaaacactagagaatgtgaaacaacgtgaagctgacttggaaaatgagctggcaaatatgtgggtgcgagttgcaaagttgaggaagtctggtaataatgctgaggatgtgtcacttcaaggggttcttgagtctgaaagttcacatacgagaattagaaatgggaatgtgccatctaacaatcactcatatgctatgttcaaggacaatgagagaaatgaaaacttgaatgagatgggtacattagaagatttaagagctagctatctggaagaaaagagaagatgcaaagagctagaatcctatatttctaggttgaagggtgaagatgttgctggtctggatgtcaccgctcttgaacagttgcagaaccttcatgttgaggctataacaaagatttgtcatgcaaagtgtgcaaatcgtgttttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005886 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0035371 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0071944 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1990752

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

1079

Amino Acids

121.44

Weight (kDa)

6.04

Isoelectric Point (pI)

50.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21730
fragaria_vesca	FvH4_2g27380 FvH4_2g27380 FvH4_2g27380
malus_domestica	MD00G1028900.v1.1
prunus_persica	Prupe.1G493400_v2.0.a1 Prupe.1G493400_v2.0.a1
pyrus_communis	pycom08g13740
rosa_chinensis	RchiOBHm_Chr6g0296241
rosa_laevigata	RLG00000011714
rosa_multiflora	Rmu_sc0000562.1_g000002 Rmu_sc0004708.1_g000012
rosa_roxburghii	Rroxscaffold_7G00171710 Rroxscaffold_7G00178350
rosa_rugosa	Rorug06G0259900.1 Rorug06G0260000
rosa_samantha	Rh6AG372000 Rh6BG379900 Rh6CG385300 Rh6DG372500
rosa_wichuraiana	Rw6G032420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1204
Acc36I	ACCTGC	1 cut(s)	1405
AccB1I	GGYRCC	2 cut(s)	61, 160
AccBSI	CCGCTC	1 cut(s)	3161
AccI	GTMKAC	1 cut(s)	2627
AccII	CGCG	1 cut(s)	931
AclWI	GGATC	4 cut(s)	719, 1000, 1824, 2014
AcsI	RAATTY	2 cut(s)	573, 693
AcuI	CTGAAG	5 cut(s)	1340, 1418, 2117, 2481, 2550
AcvI	CACGTG	1 cut(s)	79
AcyI	GRCGYC	2 cut(s)	62, 161
AdeI	CACNNNGTG	2 cut(s)	485, 605
AfaI	GTAC	4 cut(s)	263, 415, 1867, 3049
AfiI	CCNNNNNNNGG	1 cut(s)	2377
AflIII	ACRYGT	2 cut(s)	853, 1981
AhlI	ACTAGT	1 cut(s)	437
AjiI	CACGTC	1 cut(s)	1760
AjnI	CCWGG	5 cut(s)	8, 481, 535, 601, 655
Alw21I	GWGCWC	1 cut(s)	229
AlwI	GGATC	4 cut(s)	719, 1000, 1824, 2014
AlwNI	CAGNNNCTG	2 cut(s)	995, 2455
Ama87I	CYCGRG	2 cut(s)	228, 2667
AoxI	GGCC	2 cut(s)	132, 1278
ApoI	RAATTY	2 cut(s)	573, 693
AseI	ATTAAT	1 cut(s)	408
Asp700I	GAANNNNTTC	3 cut(s)	293, 1353, 2314
AspLEI	GCGC	3 cut(s)	64, 163, 376
AspS9I	GGNCC	4 cut(s)	12, 45, 335, 1279
AsuC2I	CCSGG	1 cut(s)	49
AsuII	TTCGAA	1 cut(s)	2384
AsuNHI	GCTAGC	2 cut(s)	1618, 3068
AvaI	CYCGRG	2 cut(s)	228, 2667
AvaII	GGWCC	3 cut(s)	12, 45, 335
BanI	GGYRCC	2 cut(s)	61, 160
BanII	GRGCYC	3 cut(s)	155, 1043, 2668
BarI	GAAGNNNNNNTAC	2 cut(s)	2787, 2819
BbrPI	CACGTG	1 cut(s)	79
BbsI	GAAGAC	3 cut(s)	455, 1419, 1762
Bbv12I	GWGCWC	1 cut(s)	229
BbvCI	CCTCAGC	1 cut(s)	2910
BccI	CCATC	6 cut(s)	263, 1091, 1372, 1767, 2989, 3037
BceAI	ACGGC	3 cut(s)	22, 49, 94
BcgI	CGANNNNNNTGC	2 cut(s)	2364, 2398
BciT130I	CCWGG	5 cut(s)	10, 483, 537, 603, 657
BciVI	GTATCC	1 cut(s)	2121
BcnI	CCSGG	1 cut(s)	49
BcuI	ACTAGT	1 cut(s)	437
BfaI	CTAG	9 cut(s)	438, 1209, 1581, 1619, 1988, 2816, 3069, 3104, 3120
BfmI	CTRYAG	3 cut(s)	2144, 2502, 2720
BfoI	RGCGCY	2 cut(s)	65, 164
BfuAI	ACCTGC	1 cut(s)	1405
BfuI	GTATCC	1 cut(s)	2121
BglII	AGATCT	1 cut(s)	2395
Bme1390I	CCNGG	6 cut(s)	10, 49, 483, 537, 603, 657
Bme18I	GGWCC	3 cut(s)	12, 45, 335
BmeT110I	CYCGRG	2 cut(s)	228, 2667
BmgBI	CACGTC	1 cut(s)	1760
BmgT120I	GGNCC	4 cut(s)	12, 45, 335, 1279
BmiI	GGNNCC	4 cut(s)	14, 47, 63, 162
BmrFI	CCNGG	6 cut(s)	10, 49, 483, 537, 603, 657
BmrI	ACTGGG	1 cut(s)	961
BmsI	GCATC	5 cut(s)	748, 1409, 1654, 2338, 3083
BmtI	GCTAGC	2 cut(s)	1622, 3072
BmuI	ACTGGG	1 cut(s)	961
BoxI	GACNNNNGTC	1 cut(s)	109
BpiI	GAAGAC	3 cut(s)	455, 1419, 1762
BpmI	CTGGAG	2 cut(s)	127, 2783
Bpu10I	CCTNAGC	2 cut(s)	762, 2910
Bpu14I	TTCGAA	1 cut(s)	2384
BpuEI	CTTGAG	5 cut(s)	169, 2033, 2123, 2342, 2957
BpuMI	CCSGG	1 cut(s)	49
Bsa29I	ATCGAT	1 cut(s)	1296
BsaAI	YACGTR	2 cut(s)	79, 1982
BsaHI	GRCGYC	2 cut(s)	62, 161
BsaJI	CCNNGG	4 cut(s)	183, 536, 656, 1491
BsaWI	WCCGGW	2 cut(s)	42, 836
BsaXI	ACNNNNNCTCC	6 cut(s)	461, 491, 581, 611, 1844, 1874
Bsc4I	CCNNNNNNNGG	1 cut(s)	2377
Bse118I	RCCGGY	3 cut(s)	58, 130, 157
Bse1I	ACTGG	7 cut(s)	501, 621, 967, 1024, 1795, 2289, 2575
Bse3DI	GCAATG	1 cut(s)	306
BseBI	CCWGG	5 cut(s)	10, 483, 537, 603, 657
BseCI	ATCGAT	1 cut(s)	1296
BseDI	CCNNGG	4 cut(s)	183, 536, 656, 1491
BseGI	GGATG	8 cut(s)	514, 634, 763, 1778, 1957, 2704, 2920, 3157
BseLI	CCNNNNNNNGG	1 cut(s)	2377
BseMI	GCAATG	1 cut(s)	306
BseNI	ACTGG	7 cut(s)	501, 621, 967, 1024, 1795, 2289, 2575
BseRI	GAGGAG	4 cut(s)	1042, 1235, 1493, 2729
BseYI	CCCAGC	2 cut(s)	15, 1847
Bsh1236I	CGCG	1 cut(s)	931
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	2 cut(s)	134, 1280
BshNI	GGYRCC	2 cut(s)	61, 160
BshVI	ATCGAT	1 cut(s)	1296
BsiEI	CGRYCG	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	229
BsiHKCI	CYCGRG	2 cut(s)	228, 2667
BsiSI	CCGG	6 cut(s)	43, 49, 59, 131, 158, 837
BslFI	GGGAC	5 cut(s)	31, 69, 260, 287, 949
BslI	CCNNNNNNNGG	1 cut(s)	2377
BsmBI	CGTCTC	2 cut(s)	105, 1217
BsmFI	GGGAC	5 cut(s)	31, 69, 260, 287, 949
BsmI	GAATGC	2 cut(s)	1597, 1770
BsnI	GGCC	2 cut(s)	134, 1280
BsoBI	CYCGRG	2 cut(s)	228, 2667
Bsp119I	TTCGAA	1 cut(s)	2384
Bsp1286I	GDGCHC	4 cut(s)	155, 229, 1043, 2668
Bsp1407I	TGTACA	1 cut(s)	1865
BspANI	GGCC	2 cut(s)	134, 1280
BspDI	ATCGAT	1 cut(s)	1296
BspFNI	CGCG	1 cut(s)	931
BspLI	GGNNCC	4 cut(s)	14, 47, 63, 162
BspMAI	CTGCAG	2 cut(s)	2506, 2724
BspMI	ACCTGC	1 cut(s)	1405
BspOI	GCTAGC	2 cut(s)	1622, 3072
BspPI	GGATC	4 cut(s)	719, 1000, 1824, 2014
BspQI	GCTCTTC	2 cut(s)	837, 1344
BspT104I	TTCGAA	1 cut(s)	2384
BspT107I	GGYRCC	2 cut(s)	61, 160
BsrBI	CCGCTC	1 cut(s)	3161
BsrDI	GCAATG	1 cut(s)	306
BsrFI	RCCGGY	3 cut(s)	58, 130, 157
BsrGI	TGTACA	1 cut(s)	1865
BsrI	ACTGG	7 cut(s)	501, 621, 967, 1024, 1795, 2289, 2575
BssAI	RCCGGY	3 cut(s)	58, 130, 157
BssECI	CCNNGG	4 cut(s)	183, 536, 656, 1491
BssNI	GRCGYC	2 cut(s)	62, 161
BssT1I	CCWWGG	2 cut(s)	183, 1491
Bst2UI	CCWGG	5 cut(s)	10, 483, 537, 603, 657
Bst4CI	ACNGT	8 cut(s)	199, 205, 283, 418, 1078, 2421, 2615, 3171
Bst6I	CTCTTC	4 cut(s)	837, 1344, 1470, 1696
BstACI	GRCGYC	2 cut(s)	62, 161
BstAPI	GCANNNNNTGC	2 cut(s)	460, 3221
BstAUI	TGTACA	1 cut(s)	1865
BstBAI	YACGTR	2 cut(s)	79, 1982
BstBI	TTCGAA	1 cut(s)	2384
BstC8I	GCNNGC	9 cut(s)	60, 132, 155, 159, 1061, 1620, 1896, 2859, 3070
BstEII	GGTNACC	1 cut(s)	2573
BstF5I	GGATG	8 cut(s)	514, 634, 763, 1778, 1957, 2704, 2920, 3157
BstFNI	CGCG	1 cut(s)	931
BstH2I	RGCGCY	2 cut(s)	65, 164
BstHHI	GCGC	3 cut(s)	64, 163, 376
BstMCI	CGRYCG	1 cut(s)	107
BstNI	CCWGG	5 cut(s)	10, 483, 537, 603, 657
BstPAI	GACNNNNGTC	1 cut(s)	109
BstPI	GGTNACC	1 cut(s)	2573
BstSCI	CCNGG	6 cut(s)	8, 47, 481, 535, 601, 655
BstSFI	CTRYAG	3 cut(s)	2144, 2502, 2720
BstUI	CGCG	1 cut(s)	931
BstV2I	GAAGAC	3 cut(s)	455, 1419, 1762
BstX2I	RGATCY	3 cut(s)	992, 1816, 2395
BstXI	CCANNNNNNTGG	1 cut(s)	2491
BstYI	RGATCY	3 cut(s)	992, 1816, 2395
Bsu15I	ATCGAT	1 cut(s)	1296
BsuI	GTATCC	1 cut(s)	2121
BsuRI	GGCC	2 cut(s)	134, 1280
BsuTUI	ATCGAT	1 cut(s)	1296
BtrI	CACGTC	1 cut(s)	1760
BtsCI	GGATG	8 cut(s)	514, 634, 763, 1778, 1957, 2704, 2920, 3157
BtsI	GCAGTG	3 cut(s)	507, 627, 2514
BveI	ACCTGC	1 cut(s)	1405
Cac8I	GCNNGC	9 cut(s)	60, 132, 155, 159, 1061, 1620, 1896, 2859, 3070
CaiI	CAGNNNCTG	2 cut(s)	995, 2455
CfoI	GCGC	3 cut(s)	64, 163, 376
Cfr10I	RCCGGY	3 cut(s)	58, 130, 157
Cfr13I	GGNCC	4 cut(s)	12, 45, 335, 1279
ClaI	ATCGAT	1 cut(s)	1296
CseI	GACGC	4 cut(s)	71, 460, 1194, 1234
CsiI	ACCWGGT	2 cut(s)	481, 601
Csp6I	GTAC	4 cut(s)	262, 414, 1866, 3048
CviQI	GTAC	4 cut(s)	262, 414, 1866, 3048
DinI	GGCGCC	2 cut(s)	63, 162
DraI	TTTAAA	3 cut(s)	1344, 1428, 1780
DraIII	CACNNNGTG	2 cut(s)	485, 605
DrdI	GACNNNNNNGTC	1 cut(s)	1204
DseDI	GACNNNNNNGTC	1 cut(s)	1204
Eam1104I	CTCTTC	4 cut(s)	837, 1344, 1470, 1696
EarI	CTCTTC	4 cut(s)	837, 1344, 1470, 1696
EciI	GGCGGA	1 cut(s)	127
Eco130I	CCWWGG	2 cut(s)	183, 1491
Eco24I	GRGCYC	3 cut(s)	155, 1043, 2668
Eco32I	GATATC	2 cut(s)	1083, 1711
Eco47I	GGWCC	3 cut(s)	12, 45, 335
Eco57I	CTGAAG	5 cut(s)	1340, 1418, 2117, 2481, 2550
Eco72I	CACGTG	1 cut(s)	79
Eco88I	CYCGRG	2 cut(s)	228, 2667
Eco91I	GGTNACC	1 cut(s)	2573
EcoO109I	RGGNCCY	1 cut(s)	12
EcoO65I	GGTNACC	1 cut(s)	2573
EcoRII	CCWGG	5 cut(s)	8, 481, 535, 601, 655
EcoRV	GATATC	2 cut(s)	1083, 1711
EcoT14I	CCWWGG	2 cut(s)	183, 1491
EcoT22I	ATGCAT	2 cut(s)	465, 2353
EcoT38I	GRGCYC	3 cut(s)	155, 1043, 2668
EgeI	GGCGCC	2 cut(s)	63, 162
EheI	GGCGCC	2 cut(s)	63, 162
ErhI	CCWWGG	2 cut(s)	183, 1491
Esp3I	CGTCTC	2 cut(s)	105, 1217
FalI	AAGNNNNNCTT	6 cut(s)	1663, 1695, 2614, 2646, 2919, 2951
FaqI	GGGAC	5 cut(s)	31, 69, 260, 287, 949
FauI	CCCGC	2 cut(s)	94, 162
FauNDI	CATATG	3 cut(s)	427, 2635, 2998
FblI	GTMKAC	1 cut(s)	2627
FokI	GGATG	8 cut(s)	521, 641, 770, 1785, 1964, 2711, 2927, 3164
FriOI	GRGCYC	3 cut(s)	155, 1043, 2668
FspBI	CTAG	9 cut(s)	438, 1209, 1581, 1619, 1988, 2816, 3069, 3104, 3120
GlaI	GCGC	3 cut(s)	63, 162, 375
GsaI	CCCAGC	2 cut(s)	19, 1851
GsuI	CTGGAG	2 cut(s)	127, 2783
HaeII	RGCGCY	2 cut(s)	65, 164
HaeIII	GGCC	2 cut(s)	134, 1280
HapII	CCGG	6 cut(s)	43, 49, 59, 131, 158, 837
HgaI	GACGC	4 cut(s)	71, 460, 1194, 1234
HhaI	GCGC	3 cut(s)	64, 163, 376
Hin1I	GRCGYC	2 cut(s)	62, 161
Hin6I	GCGC	3 cut(s)	62, 161, 374
HinP1I	GCGC	3 cut(s)	62, 161, 374
HindIII	AAGCTT	5 cut(s)	1057, 1430, 2066, 2472, 2543
HpaII	CCGG	6 cut(s)	43, 49, 59, 131, 158, 837
Hpy166II	GTNNAC	2 cut(s)	2628, 2951
Hpy8I	GTNNAC	2 cut(s)	2628, 2951
Hpy99I	CGWCG	1 cut(s)	349
HpyCH4III	ACNGT	8 cut(s)	199, 205, 283, 418, 1078, 2421, 2615, 3171
HpyCH4IV	ACGT	6 cut(s)	78, 855, 1369, 1759, 1981, 2833
HpySE526I	ACGT	6 cut(s)	78, 855, 1369, 1759, 1981, 2833
Hsp92I	GRCGYC	2 cut(s)	62, 161
HspAI	GCGC	3 cut(s)	62, 161, 374
KasI	GGCGCC	2 cut(s)	61, 160
KroI	GCCGGC	3 cut(s)	58, 130, 157
KroNI	GCCGGC	3 cut(s)	60, 132, 159
LguI	GCTCTTC	2 cut(s)	837, 1344
LmnI	GCTCC	7 cut(s)	469, 589, 1254, 2137, 2254, 2512, 2716
LweI	GCATC	5 cut(s)	748, 1409, 1654, 2338, 3083
MabI	ACCWGGT	2 cut(s)	481, 601
MaeI	CTAG	9 cut(s)	438, 1209, 1581, 1619, 1988, 2816, 3069, 3104, 3120
MaeII	ACGT	6 cut(s)	78, 855, 1369, 1759, 1981, 2833
MbiI	CCGCTC	1 cut(s)	3161
MflI	RGATCY	3 cut(s)	992, 1816, 2395
MhlI	GDGCHC	4 cut(s)	155, 229, 1043, 2668
Mly113I	GGCGCC	2 cut(s)	62, 161
MlyI	GAGTC	4 cut(s)	1378, 2014, 2068, 2948
MmeI	TCCRAC	2 cut(s)	752, 2673
Mph1103I	ATGCAT	2 cut(s)	465, 2353
MreI	CGCCGGCG	2 cut(s)	58, 157
MroNI	GCCGGC	3 cut(s)	58, 130, 157
MroXI	GAANNNNTTC	3 cut(s)	293, 1353, 2314
MslI	CAYNNNNRTG	2 cut(s)	360, 2997
MspA1I	CMGCKG	2 cut(s)	1438, 2501
MspI	CCGG	6 cut(s)	43, 49, 59, 131, 158, 837
MspR9I	CCNGG	6 cut(s)	10, 49, 483, 537, 603, 657
MssI	GTTTAAAC	1 cut(s)	1780
Mva1269I	GAATGC	2 cut(s)	1597, 1770
MvaI	CCWGG	5 cut(s)	10, 483, 537, 603, 657
MvnI	CGCG	1 cut(s)	931
NaeI	GCCGGC	3 cut(s)	60, 132, 159
NarI	GGCGCC	2 cut(s)	62, 161
NciI	CCSGG	1 cut(s)	49
NdeI	CATATG	3 cut(s)	427, 2635, 2998
NgoMIV	GCCGGC	3 cut(s)	58, 130, 157
NheI	GCTAGC	2 cut(s)	1618, 3068
NlaIV	GGNNCC	4 cut(s)	14, 47, 63, 162
NmuCI	GTSAC	8 cut(s)	193, 199, 477, 597, 955, 2573, 2919, 3154
NsiI	ATGCAT	2 cut(s)	465, 2353
NspV	TTCGAA	1 cut(s)	2384
PaeR7I	CTCGAG	1 cut(s)	2667
PciSI	GCTCTTC	2 cut(s)	837, 1344
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PctI	GAATGC	2 cut(s)	1597, 1770
PdiI	GCCGGC	3 cut(s)	60, 132, 159
PdmI	GAANNNNTTC	3 cut(s)	293, 1353, 2314
PfoI	TCCNGGA	1 cut(s)	47
PleI	GAGTC	4 cut(s)	1378, 2014, 2068, 2947
PluTI	GGCGCC	2 cut(s)	65, 164
PmaCI	CACGTG	1 cut(s)	79
PmeI	GTTTAAAC	1 cut(s)	1780
PmlI	CACGTG	1 cut(s)	79
PpsI	GAGTC	4 cut(s)	1378, 2014, 2068, 2947
Ppu21I	YACGTR	2 cut(s)	79, 1982
PpuMI	RGGWCCY	1 cut(s)	12
PshAI	GACNNNNGTC	1 cut(s)	109
PshBI	ATTAAT	1 cut(s)	408
Psp5II	RGGWCCY	1 cut(s)	12
Psp6I	CCWGG	5 cut(s)	8, 481, 535, 601, 655
PspCI	CACGTG	1 cut(s)	79
PspEI	GGTNACC	1 cut(s)	2573
PspFI	CCCAGC	2 cut(s)	15, 1847
PspGI	CCWGG	5 cut(s)	8, 481, 535, 601, 655
PspN4I	GGNNCC	4 cut(s)	14, 47, 63, 162
PspPI	GGNCC	4 cut(s)	12, 45, 335, 1279
PspPPI	RGGWCCY	1 cut(s)	12
PspXI	VCTCGAGB	1 cut(s)	2667
PstI	CTGCAG	2 cut(s)	2506, 2724
PstNI	CAGNNNCTG	2 cut(s)	995, 2455
PsuI	RGATCY	3 cut(s)	992, 1816, 2395
PvuII	CAGCTG	2 cut(s)	1438, 2501
RsaI	GTAC	4 cut(s)	263, 415, 1867, 3049
RsaNI	GTAC	4 cut(s)	262, 414, 1866, 3048
RseI	CAYNNNNRTG	2 cut(s)	360, 2997
SapI	GCTCTTC	2 cut(s)	837, 1344
Sau96I	GGNCC	4 cut(s)	12, 45, 335, 1279
SchI	GAGTC	4 cut(s)	1378, 2014, 2068, 2948
ScrFI	CCNGG	6 cut(s)	10, 49, 483, 537, 603, 657
SduI	GDGCHC	4 cut(s)	155, 229, 1043, 2668
SexAI	ACCWGGT	2 cut(s)	481, 601
SfaNI	GCATC	5 cut(s)	748, 1409, 1654, 2338, 3083
SfcI	CTRYAG	3 cut(s)	2144, 2502, 2720
SfoI	GGCGCC	2 cut(s)	63, 162
Sfr274I	CTCGAG	1 cut(s)	2667
SfuI	TTCGAA	1 cut(s)	2384
SgrAI	CRCCGGYG	2 cut(s)	58, 157
SinI	GGWCC	3 cut(s)	12, 45, 335
SlaI	CTCGAG	1 cut(s)	2667
SmiMI	CAYNNNNRTG	2 cut(s)	360, 2997
SmlI	CTYRAG	6 cut(s)	148, 2012, 2102, 2321, 2667, 2936
SmoI	CTYRAG	6 cut(s)	148, 2012, 2102, 2321, 2667, 2936
SpeI	ACTAGT	1 cut(s)	437
SspDI	GGCGCC	2 cut(s)	61, 160
SspMI	CTAG	9 cut(s)	438, 1209, 1581, 1619, 1988, 2816, 3069, 3104, 3120
StyD4I	CCNGG	6 cut(s)	8, 47, 481, 535, 601, 655
StyI	CCWWGG	2 cut(s)	183, 1491
TaaI	ACNGT	8 cut(s)	199, 205, 283, 418, 1078, 2421, 2615, 3171
TaiI	ACGT	6 cut(s)	81, 858, 1372, 1762, 1984, 2836
TaqI	TCGA	5 cut(s)	103, 1123, 1296, 2384, 2668
TatI	WGTACW	1 cut(s)	1865
TauI	GCSGC	3 cut(s)	166, 374, 1280
TseFI	GTSAC	8 cut(s)	193, 199, 477, 597, 955, 2573, 2919, 3154
Tsp45I	GTSAC	8 cut(s)	193, 199, 477, 597, 955, 2573, 2919, 3154
TspGWI	ACGGA	1 cut(s)	1606
VpaK11BI	GGWCC	3 cut(s)	12, 45, 335
VspI	ATTAAT	1 cut(s)	408
XapI	RAATTY	2 cut(s)	573, 693
XhoI	CTCGAG	1 cut(s)	2667
XmiI	GTMKAC	1 cut(s)	2627
XmnI	GAANNNNTTC	3 cut(s)	293, 1353, 2314
XspI	CTAG	9 cut(s)	438, 1209, 1581, 1619, 1988, 2816, 3069, 3104, 3120
Zsp2I	ATGCAT	2 cut(s)	465, 2353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.