Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010259

Physical Location & Seq

Genomic Coordinates Reverse (-)

40723075 .. 40724325

Gene Structure 1251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0260000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTATGCTACTGAAGCACTTCATTTGCCTGGAATATCTAAGAGGTTGGAGTTTGATTTGGCCATGCAGAGCAGTGATTTGAAAAGAGCTCTCCAGTGCCTTCTCACAATGAGCAACAGCAGGGACTTGGGGCAAGATAATTCAGGATTTGATTTGAAGGACATTCTTACTATAACAACTAAGAAAGAGAATATATTGGAAGCTGTCCAAGGAATAGTGAAATTTACAAAGGAGTTTTTGGATCTTATTGATGCCGCAGACGCTACTGGACAGGCTGAAATTGCTCGGGAGGCTCTGAAGAGGTTGGCTGCTGCGGCTTCTGTGAAAGGAGCTTTACAGGGTCATGAATTAAGAGGACAAGCTCTTCGGTTAGCCAATCATGGAGAGTTGACACGGCTTAGTAACTTGGTGAACAATACGGGAAGCAGCATTCGCAGCTGCAGTTTTGGGAGACAATGCCCTAATGGAGAAGGCTTGGCAGGATACTGGAATGCTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005886 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0035371 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0071944 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1990752

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

166

Amino Acids

17.97

Weight (kDa)

6.82

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21730
fragaria_vesca	FvH4_2g27380 FvH4_2g27380 FvH4_2g27380
malus_domestica	MD00G1028900.v1.1
prunus_persica	Prupe.1G493400_v2.0.a1 Prupe.1G493400_v2.0.a1
pyrus_communis	pycom08g13740
rosa_chinensis	RchiOBHm_Chr6g0296241
rosa_laevigata	RLG00000011714
rosa_multiflora	Rmu_sc0000562.1_g000002 Rmu_sc0004708.1_g000012
rosa_roxburghii	Rroxscaffold_7G00171710 Rroxscaffold_7G00178350
rosa_rugosa	Rorug06G0259900.1 Rorug06G0260000
rosa_samantha	Rh6AG372000 Rh6BG379900 Rh6CG385300 Rh6DG372500
rosa_wichuraiana	Rw6G032420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	255, 314
AclWI	GGATC	1 cut(s)	249
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	1 cut(s)	221
AcuI	CTGAAG	2 cut(s)	33, 317
AgsI	TTSAA	2 cut(s)	82, 157
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	5 cut(s)	89, 203, 332, 362, 438
AluI	AGCT	5 cut(s)	89, 203, 332, 362, 438
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	445
AlwI	GGATC	1 cut(s)	249
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	5 cut(s)	308, 311, 426, 435, 438
ApoI	RAATTY	1 cut(s)	221
ArsI	GACNNNNNNTTYG	2 cut(s)	348, 380
Asp700I	GAANNNNTTC	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	421
AvaI	CYCGRG	1 cut(s)	285
BalI	TGGCCA	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	5 cut(s)	295, 298, 425, 438, 447
BceAI	ACGGC	1 cut(s)	410
BciT130I	CCWGG	1 cut(s)	30
BciVI	GTATCC	1 cut(s)	476
BcoDI	GTCTC	1 cut(s)	445
BfmI	CTRYAG	1 cut(s)	439
BfuI	GTATCC	1 cut(s)	476
BisI	GCNGC	7 cut(s)	255, 309, 312, 315, 427, 436, 439
BlsI	GCNGC	7 cut(s)	256, 310, 313, 316, 428, 437, 440
Bme1390I	CCNGG	1 cut(s)	30
BmeT110I	CYCGRG	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	208
Bse1I	ACTGG	3 cut(s)	94, 271, 491
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	208
BseNI	ACTGG	3 cut(s)	94, 271, 491
BseXI	GCAGC	5 cut(s)	295, 298, 425, 438, 447
BshFI	GGCC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	91
BsiHKCI	CYCGRG	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	445
BsmFI	GGGAC	1 cut(s)	137
BsmI	GAATGC	2 cut(s)	429, 496
BsnI	GGCC	1 cut(s)	62
BsoBI	CYCGRG	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	241
BspACI	CCGC	2 cut(s)	255, 314
BspANI	GGCC	1 cut(s)	62
BspHI	TCATGA	1 cut(s)	343
BspMAI	CTGCAG	1 cut(s)	443
BspPI	GGATC	1 cut(s)	249
BspQI	GCTCTTC	1 cut(s)	369
BsrI	ACTGG	3 cut(s)	94, 271, 491
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	1 cut(s)	241
BssT1I	CCWWGG	1 cut(s)	208
Bst2UI	CCWGG	1 cut(s)	30
Bst6I	CTCTTC	2 cut(s)	293, 369
BstC8I	GCNNGC	1 cut(s)	496
BstDEI	CTNAG	3 cut(s)	39, 180, 398
BstKTI	GATC	1 cut(s)	244
BstMAI	GTCTC	1 cut(s)	445
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 260, 281, 290, 314, 432, 435
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstSFI	CTRYAG	1 cut(s)	439
BstV1I	GCAGC	5 cut(s)	295, 298, 425, 438, 447
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BsuI	GTATCC	1 cut(s)	476
BsuRI	GGCC	1 cut(s)	62
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	79, 101
Cac8I	GCNNGC	1 cut(s)	496
CciI	TCATGA	1 cut(s)	343
CseI	GACGC	1 cut(s)	269
CviAII	CATG	3 cut(s)	64, 344, 380
DdeI	CTNAG	3 cut(s)	39, 180, 398
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	2 cut(s)	293, 369
EarI	CTCTTC	2 cut(s)	293, 369
Ecl136II	GAGCTC	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	89
Eco57I	CTGAAG	2 cut(s)	33, 317
Eco88I	CYCGRG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	3 cut(s)	67, 347, 383
FaiI	YATR	6 cut(s)	6, 65, 173, 194, 345, 381
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	3 cut(s)	63, 343, 379
Fnu4HI	GCNGC	7 cut(s)	255, 309, 312, 315, 427, 436, 439
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	7 cut(s)	255, 309, 312, 315, 427, 436, 439
GluI	GCNGC	7 cut(s)	255, 309, 312, 315, 427, 436, 439
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	62
HgaI	GACGC	1 cut(s)	269
Hin1II	CATG	3 cut(s)	67, 347, 383
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	2 cut(s)	390, 412
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	3 cut(s)	144, 287, 344
Hpy8I	GTNNAC	2 cut(s)	390, 412
HpyAV	CCTTC	3 cut(s)	110, 151, 464
HpyCH4V	TGCA	2 cut(s)	67, 441
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 260, 281, 290, 314, 432, 435
HpyF3I	CTNAG	3 cut(s)	39, 180, 398
Hsp92II	CATG	3 cut(s)	67, 347, 383
Kzo9I	GATC	1 cut(s)	241
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	1 cut(s)	329
Lsp1109I	GCAGC	5 cut(s)	295, 298, 425, 438, 447
LweI	GCATC	1 cut(s)	241
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	2 cut(s)	310, 356
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	91
MlsI	TGGCCA	1 cut(s)	62
MluCI	AATT	4 cut(s)	139, 221, 279, 347
MluNI	TGGCCA	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	4 cut(s)	36, 283, 294, 347
Mox20I	TGGCCA	1 cut(s)	62
MroXI	GAANNNNTTC	1 cut(s)	18
MscI	TGGCCA	1 cut(s)	62
MseI	TTAA	1 cut(s)	350
Msp20I	TGGCCA	1 cut(s)	62
MspA1I	CMGCKG	1 cut(s)	438
MspR9I	CCNGG	1 cut(s)	30
Mva1269I	GAATGC	2 cut(s)	429, 496
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	7 cut(s)	14, 260, 281, 290, 314, 432, 435
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	3 cut(s)	67, 347, 383
PagI	TCATGA	1 cut(s)	343
PciSI	GCTCTTC	1 cut(s)	369
PctI	GAATGC	2 cut(s)	429, 496
PdmI	GAANNNNTTC	1 cut(s)	18
PkrI	GCNGC	7 cut(s)	256, 310, 313, 316, 428, 437, 440
Psp124BI	GAGCTC	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	241
PvuII	CAGCTG	1 cut(s)	438
SacI	GAGCTC	1 cut(s)	91
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	7 cut(s)	255, 309, 312, 315, 427, 436, 439
Sau3AI	GATC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	7 cut(s)	47, 91, 205, 305, 334, 364, 440
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	439
Sse9I	AATT	4 cut(s)	139, 221, 279, 347
SsiI	CCGC	2 cut(s)	255, 314
SstI	GAGCTC	1 cut(s)	91
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	1 cut(s)	208
TasI	AATT	4 cut(s)	139, 221, 279, 347
TauI	GCSGC	2 cut(s)	257, 317
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TscAI	CASTG	2 cut(s)	79, 101
TseI	GCWGC	5 cut(s)	308, 311, 426, 435, 438
TspDTI	ATGAA	2 cut(s)	11, 360
TspRI	CASTG	2 cut(s)	79, 101
XapI	RAATTY	1 cut(s)	221
XmnI	GAANNNNTTC	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.