Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004961.1

Orthogroup ID

OG0021670

Physical Location & Seq

Genomic Coordinates Forward (+)

45405 .. 47727

Gene Structure 2323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004961.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgggctggcacgagctcggcacaataataaatgggccggcccaagcacggcacgaagcacgactaggccctcttaaaatgggccaggccgagccgggccggcccagatccaacggatctgtccacaagttaatcacgaaggagtggcagattctagagaacaatctccccgactctatctacgtgcgcggattctcagatcagtcatcgtcggcgccaccgggactcgctgccacgacgctctcttcttcttcgatatcaacttcccgtcagaccacccgacccggccgtccaatgtgcattaccgctcgtacgggttacgggtcaaccagaatctttacgagcgggtacgtctgcgtgagcctgctcaacacctggaccggaaagaagagggaaaagttggacccagctcagttcaccgtcctccaggttctggtctcgatccaggcgctcgttttgaatgagagccgtatttcaacgaaccgggtatttagttcttctccatcgcttgggtggcttgatcgcagatttttggaatgttgctcccattgtcgccaccgccatgatgatgatgatgattcagatgtttttgtttttagaatgagaaactctaggggcaataaattcagacaccgaaatccggtcaccaattcggtagccggattagagattcctgtgaccggtcgcgggagtccatcaccagagtcgacggtcggccactggtcaccggagtcccgcaaggtctccgatgacttgtctctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

254

Amino Acids

28.07

Weight (kDa)

9.71

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021670)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004961.1_g000018
rosa_roxburghii	Rroxscaffold_7G00162070
rosa_samantha	Rh3CG236200 Rh6AG459000 Rh7AG289400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	288
AccB1I	GGYRCC	1 cut(s)	214
AccB7I	CCANNNNNTGG	2 cut(s)	433, 509
AccBSI	CCGCTC	2 cut(s)	308, 345
AccI	GTMKAC	1 cut(s)	707
AccII	CGCG	2 cut(s)	189, 687
AciI	CCGC	6 cut(s)	189, 306, 345, 559, 687, 736
AclWI	GGATC	3 cut(s)	102, 124, 436
AcoI	YGGCCR	2 cut(s)	286, 715
AcsI	RAATTY	1 cut(s)	623
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	2 cut(s)	313, 350
AfiI	CCNNNNNNNGG	6 cut(s)	48, 433, 509, 640, 680, 687
AgeI	ACCGGT	1 cut(s)	680
AgsI	TTSAA	2 cut(s)	460, 477
AjnI	CCWGG	4 cut(s)	84, 374, 426, 444
AluBI	AGCT	2 cut(s)	16, 410
AluI	AGCT	2 cut(s)	16, 410
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	2 cut(s)	442, 748
AlwI	GGATC	3 cut(s)	102, 124, 436
AlwNI	CAGNNNCTG	1 cut(s)	433
AoxI	GGCC	9 cut(s)	35, 39, 67, 82, 87, 97, 101, 286, 715
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	623
AsiGI	ACCGGT	1 cut(s)	680
AspLEI	GCGC	3 cut(s)	189, 217, 451
AspS9I	GGNCC	8 cut(s)	35, 40, 68, 82, 97, 102, 378, 403
AsuC2I	CCSGG	4 cut(s)	96, 222, 285, 485
AsuHPI	GGTGA	4 cut(s)	409, 637, 690, 717
AvaII	GGWCC	2 cut(s)	378, 403
BanI	GGYRCC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	18
BauI	CACGAG	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	2 cut(s)	511, 703
BceAI	ACGGC	3 cut(s)	65, 273, 453
BciT130I	CCWGG	4 cut(s)	86, 376, 428, 446
BcnI	CCSGG	4 cut(s)	96, 222, 285, 485
BcoDI	GTCTC	2 cut(s)	442, 748
BfaI	CTAG	3 cut(s)	65, 155, 612
BfoI	RGCGCY	2 cut(s)	218, 452
BglI	GCCNNNNNGGC	1 cut(s)	100
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	8 cut(s)	86, 96, 222, 285, 376, 428, 446, 485
Bme18I	GGWCC	2 cut(s)	378, 403
BmgT120I	GGNCC	8 cut(s)	35, 40, 68, 82, 97, 102, 378, 403
BmiI	GGNNCC	2 cut(s)	216, 405
BmrFI	CCNGG	8 cut(s)	86, 96, 222, 285, 376, 428, 446, 485
BpmI	CTGGAG	1 cut(s)	410
BpuMI	CCSGG	4 cut(s)	96, 222, 285, 485
BsaAI	YACGTR	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	215
BsaI	GGTCTC	2 cut(s)	442, 748
BsaWI	WCCGGW	4 cut(s)	380, 640, 680, 727
Bsc4I	CCNNNNNNNGG	6 cut(s)	48, 433, 509, 640, 680, 687
Bse118I	RCCGGY	3 cut(s)	37, 99, 680
Bse1I	ACTGG	1 cut(s)	725
BseBI	CCWGG	4 cut(s)	86, 376, 428, 446
BseLI	CCNNNNNNNGG	6 cut(s)	48, 433, 509, 640, 680, 687
BseMII	CTCAG	2 cut(s)	210, 425
BseNI	ACTGG	1 cut(s)	725
BseX3I	CGGCCG	1 cut(s)	286
BseXI	GCAGC	1 cut(s)	217
BseYI	CCCAGC	1 cut(s)	406
Bsh1236I	CGCG	2 cut(s)	189, 687
Bsh1285I	CGRYCG	3 cut(s)	289, 685, 714
BshFI	GGCC	9 cut(s)	37, 41, 69, 84, 89, 99, 103, 288, 717
BshNI	GGYRCC	1 cut(s)	214
BshTI	ACCGGT	1 cut(s)	680
BsiEI	CGRYCG	3 cut(s)	289, 685, 714
BsiHKAI	GWGCWC	1 cut(s)	18
BsiWI	CGTACG	1 cut(s)	311
BslFI	GGGAC	2 cut(s)	237, 718
BslI	CCNNNNNNNGG	6 cut(s)	48, 433, 509, 640, 680, 687
BsmAI	GTCTC	2 cut(s)	442, 748
BsmFI	GGGAC	2 cut(s)	237, 718
BsnI	GGCC	9 cut(s)	37, 41, 69, 84, 89, 99, 103, 288, 717
Bso31I	GGTCTC	2 cut(s)	442, 748
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	5 cut(s)	107, 116, 199, 441, 520
BspACI	CCGC	6 cut(s)	189, 306, 345, 559, 687, 736
BspANI	GGCC	9 cut(s)	37, 41, 69, 84, 89, 99, 103, 288, 717
BspCNI	CTCAG	2 cut(s)	209, 424
BspFNI	CGCG	2 cut(s)	189, 687
BspLI	GGNNCC	2 cut(s)	216, 405
BspPI	GGATC	3 cut(s)	102, 124, 436
BspT107I	GGYRCC	1 cut(s)	214
BspTNI	GGTCTC	2 cut(s)	442, 748
BsrBI	CCGCTC	2 cut(s)	308, 345
BsrFI	RCCGGY	3 cut(s)	37, 99, 680
BsrI	ACTGG	1 cut(s)	725
BssAI	RCCGGY	3 cut(s)	37, 99, 680
BssMI	GATC	5 cut(s)	107, 116, 199, 441, 520
BssNI	GRCGYC	1 cut(s)	215
BssSI	CACGAG	1 cut(s)	11
Bst2BI	CACGAG	1 cut(s)	11
Bst2UI	CCWGG	4 cut(s)	86, 376, 428, 446
Bst4CI	ACNGT	2 cut(s)	421, 712
Bst6I	CTCTTC	2 cut(s)	250, 383
BstACI	GRCGYC	1 cut(s)	215
BstBAI	YACGTR	1 cut(s)	184
BstC8I	GCNNGC	4 cut(s)	8, 39, 101, 365
BstDEI	CTNAG	2 cut(s)	196, 411
BstEII	GGTNACC	2 cut(s)	643, 723
BstFNI	CGCG	2 cut(s)	189, 687
BstH2I	RGCGCY	2 cut(s)	218, 452
BstHHI	GCGC	3 cut(s)	189, 217, 451
BstKTI	GATC	5 cut(s)	110, 119, 202, 444, 523
BstMAI	GTCTC	2 cut(s)	442, 748
BstMBI	GATC	5 cut(s)	107, 116, 199, 441, 520
BstMCI	CGRYCG	3 cut(s)	289, 685, 714
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 514
BstNI	CCWGG	4 cut(s)	86, 376, 428, 446
BstPI	GGTNACC	2 cut(s)	643, 723
BstSCI	CCNGG	8 cut(s)	84, 94, 220, 283, 374, 426, 444, 483
BstUI	CGCG	2 cut(s)	189, 687
BstV1I	GCAGC	1 cut(s)	217
BstX2I	RGATCY	2 cut(s)	107, 116
BstYI	RGATCY	2 cut(s)	107, 116
BstZI	CGGCCG	1 cut(s)	286
BsuRI	GGCC	9 cut(s)	37, 41, 69, 84, 89, 99, 103, 288, 717
BtgZI	GCGATG	1 cut(s)	489
BtsIMutI	CAGTG	1 cut(s)	718
Cac8I	GCNNGC	4 cut(s)	8, 39, 101, 365
CaiI	CAGNNNCTG	1 cut(s)	433
CfoI	GCGC	3 cut(s)	189, 217, 451
Cfr10I	RCCGGY	3 cut(s)	37, 99, 680
Cfr13I	GGNCC	8 cut(s)	35, 40, 68, 82, 97, 102, 378, 403
CseI	GACGC	1 cut(s)	247
Csp6I	GTAC	2 cut(s)	312, 349
CspAI	ACCGGT	1 cut(s)	680
CviAII	CATG	1 cut(s)	563
CviQI	GTAC	2 cut(s)	312, 349
DdeI	CTNAG	2 cut(s)	196, 411
DinI	GGCGCC	1 cut(s)	216
DpnI	GATC	5 cut(s)	109, 118, 201, 443, 522
DpnII	GATC	5 cut(s)	107, 116, 199, 441, 520
DrdI	GACNNNNNNGTC	1 cut(s)	288
DseDI	GACNNNNNNGTC	1 cut(s)	288
EaeI	YGGCCR	2 cut(s)	286, 715
EagI	CGGCCG	1 cut(s)	286
Eam1104I	CTCTTC	2 cut(s)	250, 383
EarI	CTCTTC	2 cut(s)	250, 383
Ecl136II	GAGCTC	1 cut(s)	16
EclXI	CGGCCG	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	18
Eco31I	GGTCTC	2 cut(s)	442, 748
Eco32I	GATATC	1 cut(s)	258
Eco47I	GGWCC	2 cut(s)	378, 403
Eco52I	CGGCCG	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	16
Eco91I	GGTNACC	2 cut(s)	643, 723
EcoICRI	GAGCTC	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	68
EcoO65I	GGTNACC	2 cut(s)	643, 723
EcoRII	CCWGG	4 cut(s)	84, 374, 426, 444
EcoRV	GATATC	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	18
EgeI	GGCGCC	1 cut(s)	216
EheI	GGCGCC	1 cut(s)	216
FaeI	CATG	1 cut(s)	566
FaiI	YATR	1 cut(s)	564
FaqI	GGGAC	2 cut(s)	237, 718
FatI	CATG	1 cut(s)	562
FauI	CCCGC	3 cut(s)	338, 680, 743
FblI	GTMKAC	1 cut(s)	707
Fnu4HI	GCNGC	1 cut(s)	231
FriOI	GRGCYC	1 cut(s)	18
FseI	GGCCGGCC	2 cut(s)	41, 103
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	3 cut(s)	65, 155, 612
GlaI	GCGC	3 cut(s)	188, 216, 450
GluI	GCNGC	1 cut(s)	231
GsaI	CCCAGC	1 cut(s)	410
GsuI	CTGGAG	1 cut(s)	410
HaeII	RGCGCY	2 cut(s)	218, 452
HaeIII	GGCC	9 cut(s)	37, 41, 69, 84, 89, 99, 103, 288, 717
HgaI	GACGC	1 cut(s)	247
HhaI	GCGC	3 cut(s)	189, 217, 451
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	1 cut(s)	566
Hin6I	GCGC	3 cut(s)	187, 215, 449
HinP1I	GCGC	3 cut(s)	187, 215, 449
HincII	GTYRAC	2 cut(s)	327, 708
HindII	GTYRAC	2 cut(s)	327, 708
HphI	GGTGA	4 cut(s)	409, 637, 690, 717
Hpy166II	GTNNAC	4 cut(s)	124, 327, 417, 708
Hpy188I	TCNGA	5 cut(s)	199, 273, 583, 629, 748
Hpy188III	TCNNGA	3 cut(s)	136, 155, 439
Hpy8I	GTNNAC	4 cut(s)	124, 327, 417, 708
Hpy99I	CGWCG	3 cut(s)	214, 241, 712
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	2 cut(s)	421, 712
HpyCH4IV	ACGT	2 cut(s)	183, 351
HpyCH4V	TGCA	1 cut(s)	300
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 514
HpyF3I	CTNAG	2 cut(s)	196, 411
HpySE526I	ACGT	2 cut(s)	183, 351
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	1 cut(s)	566
HspAI	GCGC	3 cut(s)	187, 215, 449
KasI	GGCGCC	1 cut(s)	214
KroI	GCCGGC	2 cut(s)	37, 99
KroNI	GCCGGC	2 cut(s)	39, 101
Kzo9I	GATC	5 cut(s)	107, 116, 199, 441, 520
LmnI	GCTCC	1 cut(s)	548
Lsp1109I	GCAGC	1 cut(s)	217
MaeI	CTAG	3 cut(s)	65, 155, 612
MaeII	ACGT	2 cut(s)	183, 351
MaeIII	GTNAC	4 cut(s)	317, 643, 676, 723
MalI	GATC	5 cut(s)	109, 118, 201, 443, 522
MbiI	CCGCTC	2 cut(s)	308, 345
MboI	GATC	5 cut(s)	107, 116, 199, 441, 520
MboII	GAAGA	5 cut(s)	237, 240, 243, 400, 489
MflI	RGATCY	2 cut(s)	107, 116
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	2 cut(s)	623, 649
Mly113I	GGCGCC	1 cut(s)	215
MlyI	GAGTC	5 cut(s)	167, 219, 700, 713, 740
MmeI	TCCRAC	2 cut(s)	135, 381
MnlI	CCTC	3 cut(s)	81, 384, 434
MroNI	GCCGGC	2 cut(s)	37, 99
MseI	TTAA	2 cut(s)	75, 131
MslI	CAYNNNNRTG	2 cut(s)	561, 567
MspR9I	CCNGG	8 cut(s)	86, 96, 222, 285, 376, 428, 446, 485
MvaI	CCWGG	4 cut(s)	86, 376, 428, 446
MvnI	CGCG	2 cut(s)	189, 687
MwoI	GCNNNNNNNGC	2 cut(s)	100, 514
NaeI	GCCGGC	2 cut(s)	39, 101
NarI	GGCGCC	1 cut(s)	215
NciI	CCSGG	4 cut(s)	96, 222, 285, 485
NdeII	GATC	5 cut(s)	107, 116, 199, 441, 520
NgoMIV	GCCGGC	2 cut(s)	37, 99
NlaIII	CATG	1 cut(s)	566
NlaIV	GGNNCC	2 cut(s)	216, 405
NmeAIII	GCCGAG	1 cut(s)	115
NmuCI	GTSAC	3 cut(s)	643, 676, 723
PdiI	GCCGGC	2 cut(s)	39, 101
PfeI	GAWTC	5 cut(s)	151, 192, 333, 578, 670
Pfl23II	CGTACG	1 cut(s)	311
PflMI	CCANNNNNTGG	2 cut(s)	433, 509
PinAI	ACCGGT	1 cut(s)	680
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	5 cut(s)	167, 219, 699, 712, 739
PluTI	GGCGCC	1 cut(s)	218
PpsI	GAGTC	5 cut(s)	167, 219, 699, 712, 739
Ppu21I	YACGTR	1 cut(s)	184
Psp124BI	GAGCTC	1 cut(s)	18
Psp6I	CCWGG	4 cut(s)	84, 374, 426, 444
PspEI	GGTNACC	2 cut(s)	643, 723
PspFI	CCCAGC	1 cut(s)	406
PspGI	CCWGG	4 cut(s)	84, 374, 426, 444
PspLI	CGTACG	1 cut(s)	311
PspN4I	GGNNCC	2 cut(s)	216, 405
PspPI	GGNCC	8 cut(s)	35, 40, 68, 82, 97, 102, 378, 403
PstNI	CAGNNNCTG	1 cut(s)	433
PsuI	RGATCY	2 cut(s)	107, 116
RigI	GGCCGGCC	2 cut(s)	41, 103
RsaI	GTAC	2 cut(s)	313, 350
RsaNI	GTAC	2 cut(s)	312, 349
RseI	CAYNNNNRTG	2 cut(s)	561, 567
SacI	GAGCTC	1 cut(s)	18
SalI	GTCGAC	1 cut(s)	706
SaqAI	TTAA	2 cut(s)	75, 131
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	5 cut(s)	107, 116, 199, 441, 520
Sau96I	GGNCC	8 cut(s)	35, 40, 68, 82, 97, 102, 378, 403
SchI	GAGTC	5 cut(s)	167, 219, 700, 713, 740
ScrFI	CCNGG	8 cut(s)	86, 96, 222, 285, 376, 428, 446, 485
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	7 cut(s)	18, 186, 354, 377, 412, 432, 744
SfoI	GGCGCC	1 cut(s)	216
SinI	GGWCC	2 cut(s)	378, 403
SmiMI	CAYNNNNRTG	2 cut(s)	561, 567
Sse9I	AATT	2 cut(s)	623, 649
SsiI	CCGC	6 cut(s)	189, 306, 345, 559, 687, 736
SspDI	GGCGCC	1 cut(s)	214
SspMI	CTAG	3 cut(s)	65, 155, 612
SstI	GAGCTC	1 cut(s)	18
StyD4I	CCNGG	8 cut(s)	84, 94, 220, 283, 374, 426, 444, 483
TaaI	ACNGT	2 cut(s)	421, 712
TaiI	ACGT	2 cut(s)	186, 354
TaqI	TCGA	3 cut(s)	254, 440, 707
TasI	AATT	2 cut(s)	623, 649
TfiI	GAWTC	5 cut(s)	151, 192, 333, 578, 670
Tru1I	TTAA	2 cut(s)	75, 131
Tru9I	TTAA	2 cut(s)	75, 131
TscAI	CASTG	1 cut(s)	725
TseFI	GTSAC	3 cut(s)	643, 676, 723
TseI	GCWGC	1 cut(s)	230
Tsp45I	GTSAC	3 cut(s)	643, 676, 723
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	725
Van91I	CCANNNNNTGG	2 cut(s)	433, 509
VpaK11BI	GGWCC	2 cut(s)	378, 403
XapI	RAATTY	1 cut(s)	623
XbaI	TCTAGA	1 cut(s)	154
XcmI	CCANNNNNNNNNTGG	1 cut(s)	510
XmiI	GTMKAC	1 cut(s)	707
XspI	CTAG	3 cut(s)	65, 155, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.