Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0021670

Physical Location & Seq

Genomic Coordinates Forward (+)

22358540 .. 22358719

Gene Structure 180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG236200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGGGTTACGGGTCAACCCGAATCTTTACGAGCGAGTACGTCTGCGTGAGCCTGCTCAACACCTGGACCGGAAAGAAGAGGGAGAAGTCGGACCCGGCTCAGTTCACCGTCCTCCAGGTTCTAGTCTCGATCCAGGCGCTCGTTTTGAACGAGAGCCGTATTTCAACGAACCGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

59

Amino Acids

6.64

Weight (kDa)

9.51

Isoelectric Point (pI)

15.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021670)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004961.1_g000018
rosa_roxburghii	Rroxscaffold_7G00162070
rosa_samantha	Rh3CG236200 Rh6AG459000 Rh7AG289400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	124
AfaI	GTAC	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	148, 165
AjnI	CCWGG	3 cut(s)	62, 114, 132
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	2 cut(s)	66, 91
AsuC2I	CCSGG	2 cut(s)	95, 173
AsuHPI	GGTGA	1 cut(s)	97
AvaII	GGWCC	2 cut(s)	66, 91
BceAI	ACGGC	1 cut(s)	141
BciT130I	CCWGG	3 cut(s)	64, 116, 134
BcnI	CCSGG	2 cut(s)	95, 173
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	1 cut(s)	122
BfoI	RGCGCY	1 cut(s)	140
Bme1390I	CCNGG	5 cut(s)	64, 95, 116, 134, 173
Bme18I	GGWCC	2 cut(s)	66, 91
BmgT120I	GGNCC	2 cut(s)	66, 91
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	5 cut(s)	64, 95, 116, 134, 173
BpmI	CTGGAG	1 cut(s)	98
BpuMI	CCSGG	2 cut(s)	95, 173
BsaWI	WCCGGW	1 cut(s)	68
BseBI	CCWGG	3 cut(s)	64, 116, 134
BseMII	CTCAG	1 cut(s)	113
BsiSI	CCGG	3 cut(s)	69, 95, 172
BsmAI	GTCTC	1 cut(s)	130
Bsp143I	GATC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	93
BspPI	GGATC	1 cut(s)	124
BssMI	GATC	1 cut(s)	129
Bst2UI	CCWGG	3 cut(s)	64, 116, 134
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	1 cut(s)	99
BstH2I	RGCGCY	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	1 cut(s)	132
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	129
BstNI	CCWGG	3 cut(s)	64, 116, 134
BstSCI	CCNGG	5 cut(s)	62, 93, 114, 132, 171
Cac8I	GCNNGC	1 cut(s)	53
CfoI	GCGC	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	66, 91
Csp6I	GTAC	1 cut(s)	37
CviJI	RGCY	3 cut(s)	51, 98, 156
CviKI_1	RGCY	3 cut(s)	51, 98, 156
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco47I	GGWCC	2 cut(s)	66, 91
EcoRII	CCWGG	3 cut(s)	62, 114, 132
FaiI	YATR	1 cut(s)	178
FspBI	CTAG	1 cut(s)	122
GlaI	GCGC	1 cut(s)	138
GsuI	CTGGAG	1 cut(s)	98
HaeII	RGCGCY	1 cut(s)	140
HapII	CCGG	3 cut(s)	69, 95, 172
HhaI	GCGC	1 cut(s)	139
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	1 cut(s)	21
HpaII	CCGG	3 cut(s)	69, 95, 172
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	2 cut(s)	15, 105
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	2 cut(s)	15, 105
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	39
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	39
HspAI	GCGC	1 cut(s)	137
Kzo9I	GATC	1 cut(s)	129
LpnPI	CCDG	9 cut(s)	49, 65, 76, 82, 101, 108, 119, 128, 146
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MboII	GAAGA	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	2 cut(s)	72, 122
MspI	CCGG	3 cut(s)	69, 95, 172
MspR9I	CCNGG	5 cut(s)	64, 95, 116, 134, 173
MvaI	CCWGG	3 cut(s)	64, 116, 134
NciI	CCSGG	2 cut(s)	95, 173
NdeII	GATC	1 cut(s)	129
NlaIV	GGNNCC	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	21
Psp6I	CCWGG	3 cut(s)	62, 114, 132
PspGI	CCWGG	3 cut(s)	62, 114, 132
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	2 cut(s)	66, 91
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	2 cut(s)	66, 91
ScrFI	CCNGG	5 cut(s)	64, 95, 116, 134, 173
SetI	ASST	3 cut(s)	42, 65, 120
SinI	GGWCC	2 cut(s)	66, 91
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	5 cut(s)	62, 93, 114, 132, 171
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	128
TfiI	GAWTC	1 cut(s)	21
VpaK11BI	GGWCC	2 cut(s)	66, 91
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.