Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0021670

Physical Location & Seq

Genomic Coordinates Forward (+)

64188329 .. 64204764

Gene Structure 16436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG459000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAAGGAGTGGCGGATTCTAGAGAATAATCTCCCCGACTCTATCTACGTGCGCAGATTCTCAGATCAGTCATCGTCGGCGCCACCGGGACTCGCTACCACGACATGCTCTTCTTCTTCTTCGATATCAACTTCTCGTCAGACTACCCGACCCGGCCTTCCAATGTGCATTACCACTCCTACGGGTTATGGATCAACCCGAATCTTTATGAGCGGGTACGTCTGCGTGAGCCTGCTCAACACCTGGACCGGAAAGAAGAGAGAGAAGTGGGACCCGGCTCAGTTCACGGTCCTCCAGGTTCTGGTCTCGATCCAGGCACTCGTTTTGAACGAGAGCCGTATTTCAACGAACCGGCTAACTAGTGGTGGAGATGCGTCGACAAAGAATGCCGTGGGTGTGGGGCGAGTCAGAGACAATGACGGAACAAATGTCGGCGTCCTCGACTTTGGTGACTTCGACGATGGCGCCGCCGCGGAGCATCTTGGCACAGACAACCTTAAAACTGTAAGGATTCTTCTTCTTAGCATCAGCGACTGTGCCACTATTATAGATGGTAACCGCACCGTCTTAAGCCGCCATGGTAGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

196

Amino Acids

21.06

Weight (kDa)

8.41

Isoelectric Point (pI)

28.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021670)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004961.1_g000018
rosa_roxburghii	Rroxscaffold_7G00162070
rosa_samantha	Rh3CG236200 Rh6AG459000 Rh7AG289400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	53
AccB1I	GGYRCC	2 cut(s)	79, 464
AccB7I	CCANNNNNTGG	1 cut(s)	301
AccBSI	CCGCTC	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	377
AccII	CGCG	1 cut(s)	473
AciI	CCGC	7 cut(s)	13, 213, 468, 471, 473, 559, 574
AclWI	GGATC	2 cut(s)	199, 304
AcyI	GRCGYC	3 cut(s)	80, 435, 465
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	301
AflII	CTTAAG	1 cut(s)	568
AgsI	TTSAA	2 cut(s)	328, 345
AhlI	ACTAGT	1 cut(s)	359
AjnI	CCWGG	3 cut(s)	242, 294, 312
Alw26I	GTCTC	2 cut(s)	310, 405
AlwI	GGATC	2 cut(s)	199, 304
AlwNI	CAGNNNCTG	2 cut(s)	301, 534
AoxI	GGCC	1 cut(s)	154
AspLEI	GCGC	3 cut(s)	54, 82, 467
AspS9I	GGNCC	3 cut(s)	246, 271, 289
AsuC2I	CCSGG	3 cut(s)	87, 153, 275
AsuHPI	GGTGA	1 cut(s)	461
AvaII	GGWCC	3 cut(s)	246, 271, 289
BanI	GGYRCC	2 cut(s)	79, 464
BarI	GAAGNNNNNNTAC	2 cut(s)	498, 530
BccI	CCATC	2 cut(s)	455, 545
BceAI	ACGGC	2 cut(s)	321, 374
BciT130I	CCWGG	3 cut(s)	244, 296, 314
BcnI	CCSGG	3 cut(s)	87, 153, 275
BcoDI	GTCTC	2 cut(s)	310, 405
BcuI	ACTAGT	1 cut(s)	359
BfaI	CTAG	2 cut(s)	20, 360
BfoI	RGCGCY	2 cut(s)	83, 468
BfrI	CTTAAG	1 cut(s)	568
BisI	GCNGC	3 cut(s)	468, 471, 574
BlsI	GCNGC	3 cut(s)	469, 472, 575
Bme1390I	CCNGG	6 cut(s)	87, 153, 244, 275, 296, 314
Bme18I	GGWCC	3 cut(s)	246, 271, 289
BmgT120I	GGNCC	3 cut(s)	246, 271, 289
BmiI	GGNNCC	4 cut(s)	81, 272, 273, 466
BmrFI	CCNGG	6 cut(s)	87, 153, 244, 275, 296, 314
BmsI	GCATC	3 cut(s)	361, 487, 534
BpmI	CTGGAG	1 cut(s)	278
BpuMI	CCSGG	3 cut(s)	87, 153, 275
BsaAI	YACGTR	1 cut(s)	49
BsaHI	GRCGYC	3 cut(s)	80, 435, 465
BsaI	GGTCTC	1 cut(s)	310
BsaJI	CCNNGG	3 cut(s)	390, 471, 577
BsaWI	WCCGGW	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse118I	RCCGGY	1 cut(s)	351
BseBI	CCWGG	3 cut(s)	244, 296, 314
BseDI	CCNNGG	3 cut(s)	390, 471, 577
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMII	CTCAG	2 cut(s)	75, 293
Bsh1236I	CGCG	1 cut(s)	473
BshFI	GGCC	1 cut(s)	156
BshNI	GGYRCC	2 cut(s)	79, 464
BsiSI	CCGG	5 cut(s)	86, 153, 249, 275, 352
BslFI	GGGAC	2 cut(s)	102, 284
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	2 cut(s)	310, 405
BsmFI	GGGAC	2 cut(s)	102, 284
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	1 cut(s)	156
Bso31I	GGTCTC	1 cut(s)	310
Bsp143I	GATC	3 cut(s)	64, 191, 309
Bsp19I	CCATGG	1 cut(s)	577
BspACI	CCGC	7 cut(s)	13, 213, 468, 471, 473, 559, 574
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	2 cut(s)	74, 292
BspFNI	CGCG	1 cut(s)	473
BspLI	GGNNCC	4 cut(s)	81, 272, 273, 466
BspPI	GGATC	2 cut(s)	199, 304
BspQI	GCTCTTC	1 cut(s)	115
BspT107I	GGYRCC	2 cut(s)	79, 464
BspTI	CTTAAG	1 cut(s)	568
BspTNI	GGTCTC	1 cut(s)	310
BsrBI	CCGCTC	1 cut(s)	213
BsrFI	RCCGGY	1 cut(s)	351
BssAI	RCCGGY	1 cut(s)	351
BssECI	CCNNGG	3 cut(s)	390, 471, 577
BssMI	GATC	3 cut(s)	64, 191, 309
BssNI	GRCGYC	3 cut(s)	80, 435, 465
BssT1I	CCWWGG	1 cut(s)	577
Bst2UI	CCWGG	3 cut(s)	244, 296, 314
Bst4CI	ACNGT	4 cut(s)	289, 505, 536, 565
Bst6I	CTCTTC	2 cut(s)	115, 251
BstACI	GRCGYC	3 cut(s)	80, 435, 465
BstAFI	CTTAAG	1 cut(s)	568
BstBAI	YACGTR	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	3 cut(s)	61, 279, 521
BstDSI	CCRYGG	3 cut(s)	390, 471, 577
BstEII	GGTNACC	1 cut(s)	554
BstFNI	CGCG	1 cut(s)	473
BstH2I	RGCGCY	2 cut(s)	83, 468
BstHHI	GCGC	3 cut(s)	54, 82, 467
BstKTI	GATC	3 cut(s)	67, 194, 312
BstMAI	GTCTC	2 cut(s)	310, 405
BstMBI	GATC	3 cut(s)	64, 191, 309
BstNI	CCWGG	3 cut(s)	244, 296, 314
BstNSI	RCATGY	1 cut(s)	108
BstPI	GGTNACC	1 cut(s)	554
BstSCI	CCNGG	6 cut(s)	85, 151, 242, 273, 294, 312
BstUI	CGCG	1 cut(s)	473
BstXI	CCANNNNNNTGG	1 cut(s)	584
BsuRI	GGCC	1 cut(s)	156
BtgI	CCRYGG	3 cut(s)	390, 471, 577
Cac8I	GCNNGC	1 cut(s)	233
CaiI	CAGNNNCTG	2 cut(s)	301, 534
CfoI	GCGC	3 cut(s)	54, 82, 467
Cfr10I	RCCGGY	1 cut(s)	351
Cfr13I	GGNCC	3 cut(s)	246, 271, 289
Cfr42I	CCGCGG	1 cut(s)	474
CseI	GACGC	2 cut(s)	363, 424
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	2 cut(s)	105, 578
CviJI	RGCY	6 cut(s)	156, 231, 278, 336, 355, 573
CviKI_1	RGCY	6 cut(s)	156, 231, 278, 336, 355, 573
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	3 cut(s)	61, 279, 521
DinI	GGCGCC	2 cut(s)	81, 466
DpnI	GATC	3 cut(s)	66, 193, 311
DpnII	GATC	3 cut(s)	64, 191, 309
Eam1104I	CTCTTC	2 cut(s)	115, 251
EarI	CTCTTC	2 cut(s)	115, 251
EciI	GGCGGA	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	577
Eco31I	GGTCTC	1 cut(s)	310
Eco32I	GATATC	1 cut(s)	126
Eco47I	GGWCC	3 cut(s)	246, 271, 289
Eco91I	GGTNACC	1 cut(s)	554
EcoO109I	RGGNCCY	1 cut(s)	271
EcoO65I	GGTNACC	1 cut(s)	554
EcoRII	CCWGG	3 cut(s)	242, 294, 312
EcoRV	GATATC	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	577
EgeI	GGCGCC	2 cut(s)	81, 466
EheI	GGCGCC	2 cut(s)	81, 466
ErhI	CCWWGG	1 cut(s)	577
FaeI	CATG	2 cut(s)	108, 581
FaiI	YATR	5 cut(s)	106, 189, 209, 548, 579
FaqI	GGGAC	2 cut(s)	102, 284
FatI	CATG	2 cut(s)	104, 577
FauI	CCCGC	1 cut(s)	206
FblI	GTMKAC	1 cut(s)	377
Fnu4HI	GCNGC	3 cut(s)	468, 471, 574
Fsp4HI	GCNGC	3 cut(s)	468, 471, 574
FspBI	CTAG	2 cut(s)	20, 360
FspI	TGCGCA	1 cut(s)	53
GlaI	GCGC	3 cut(s)	53, 81, 466
GluI	GCNGC	3 cut(s)	468, 471, 574
GsuI	CTGGAG	1 cut(s)	278
HaeII	RGCGCY	2 cut(s)	83, 468
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	5 cut(s)	86, 153, 249, 275, 352
HgaI	GACGC	2 cut(s)	363, 424
HhaI	GCGC	3 cut(s)	54, 82, 467
Hin1I	GRCGYC	3 cut(s)	80, 435, 465
Hin1II	CATG	2 cut(s)	108, 581
Hin6I	GCGC	3 cut(s)	52, 80, 465
HinP1I	GCGC	3 cut(s)	52, 80, 465
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HinfI	GANTC	7 cut(s)	16, 38, 57, 90, 201, 405, 511
HpaII	CCGG	5 cut(s)	86, 153, 249, 275, 352
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	2 cut(s)	285, 378
Hpy188I	TCNGA	3 cut(s)	64, 141, 410
Hpy188III	TCNNGA	2 cut(s)	20, 307
Hpy8I	GTNNAC	2 cut(s)	285, 378
Hpy99I	CGWCG	3 cut(s)	79, 379, 461
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	4 cut(s)	289, 505, 536, 565
HpyCH4IV	ACGT	2 cut(s)	48, 219
HpyCH4V	TGCA	1 cut(s)	168
HpyF3I	CTNAG	3 cut(s)	61, 279, 521
HpySE526I	ACGT	2 cut(s)	48, 219
Hsp92I	GRCGYC	3 cut(s)	80, 435, 465
Hsp92II	CATG	2 cut(s)	108, 581
HspAI	GCGC	3 cut(s)	52, 80, 465
KasI	GGCGCC	2 cut(s)	79, 464
KflI	GGGWCCC	1 cut(s)	271
KspI	CCGCGG	1 cut(s)	474
Kzo9I	GATC	3 cut(s)	64, 191, 309
LguI	GCTCTTC	1 cut(s)	115
LmnI	GCTCC	1 cut(s)	475
LweI	GCATC	3 cut(s)	361, 487, 534
MaeI	CTAG	2 cut(s)	20, 360
MaeII	ACGT	2 cut(s)	48, 219
MaeIII	GTNAC	2 cut(s)	449, 554
MalI	GATC	3 cut(s)	66, 193, 311
MbiI	CCGCTC	1 cut(s)	213
MboI	GATC	3 cut(s)	64, 191, 309
MboII	GAAGA	7 cut(s)	102, 105, 108, 111, 268, 506, 509
Mly113I	GGCGCC	2 cut(s)	80, 465
MlyI	GAGTC	3 cut(s)	32, 84, 414
MnlI	CCTC	2 cut(s)	302, 449
MseI	TTAA	3 cut(s)	498, 569, 589
MslI	CAYNNNNRTG	1 cut(s)	582
MspA1I	CMGCKG	1 cut(s)	473
MspCI	CTTAAG	1 cut(s)	568
MspI	CCGG	5 cut(s)	86, 153, 249, 275, 352
MspR9I	CCNGG	6 cut(s)	87, 153, 244, 275, 296, 314
Mva1269I	GAATGC	1 cut(s)	391
MvaI	CCWGG	3 cut(s)	244, 296, 314
MvnI	CGCG	1 cut(s)	473
NarI	GGCGCC	2 cut(s)	80, 465
NciI	CCSGG	3 cut(s)	87, 153, 275
NcoI	CCATGG	1 cut(s)	577
NdeII	GATC	3 cut(s)	64, 191, 309
NlaIII	CATG	2 cut(s)	108, 581
NlaIV	GGNNCC	4 cut(s)	81, 272, 273, 466
NmuCI	GTSAC	1 cut(s)	449
NsbI	TGCGCA	1 cut(s)	53
NspI	RCATGY	1 cut(s)	108
PciSI	GCTCTTC	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	2 cut(s)	327, 438
PctI	GAATGC	1 cut(s)	391
PfeI	GAWTC	4 cut(s)	16, 57, 201, 511
PflMI	CCANNNNNTGG	1 cut(s)	301
PkrI	GCNGC	3 cut(s)	469, 472, 575
PleI	GAGTC	3 cut(s)	32, 84, 413
PluTI	GGCGCC	2 cut(s)	83, 468
PpsI	GAGTC	3 cut(s)	32, 84, 413
Ppu21I	YACGTR	1 cut(s)	49
PpuMI	RGGWCCY	1 cut(s)	271
Psp5II	RGGWCCY	1 cut(s)	271
Psp6I	CCWGG	3 cut(s)	242, 294, 312
PspEI	GGTNACC	1 cut(s)	554
PspGI	CCWGG	3 cut(s)	242, 294, 312
PspN4I	GGNNCC	4 cut(s)	81, 272, 273, 466
PspPI	GGNCC	3 cut(s)	246, 271, 289
PspPPI	RGGWCCY	1 cut(s)	271
PstNI	CAGNNNCTG	2 cut(s)	301, 534
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	582
SacII	CCGCGG	1 cut(s)	474
SalI	GTCGAC	1 cut(s)	376
SapI	GCTCTTC	1 cut(s)	115
SaqAI	TTAA	3 cut(s)	498, 569, 589
SatI	GCNGC	3 cut(s)	468, 471, 574
Sau3AI	GATC	3 cut(s)	64, 191, 309
Sau96I	GGNCC	3 cut(s)	246, 271, 289
SchI	GAGTC	3 cut(s)	32, 84, 414
ScrFI	CCNGG	6 cut(s)	87, 153, 244, 275, 296, 314
SetI	ASST	5 cut(s)	51, 222, 245, 300, 498
SfaNI	GCATC	3 cut(s)	361, 487, 534
SfoI	GGCGCC	2 cut(s)	81, 466
Sfr303I	CCGCGG	1 cut(s)	474
SgrBI	CCGCGG	1 cut(s)	474
SinI	GGWCC	3 cut(s)	246, 271, 289
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	1 cut(s)	568
SmoI	CTYRAG	1 cut(s)	568
SpeI	ACTAGT	1 cut(s)	359
SsiI	CCGC	7 cut(s)	13, 213, 468, 471, 473, 559, 574
SspDI	GGCGCC	2 cut(s)	79, 464
SspMI	CTAG	2 cut(s)	20, 360
StyD4I	CCNGG	6 cut(s)	85, 151, 242, 273, 294, 312
StyI	CCWWGG	1 cut(s)	577
TaaI	ACNGT	4 cut(s)	289, 505, 536, 565
TaiI	ACGT	2 cut(s)	51, 222
TaqI	TCGA	5 cut(s)	122, 308, 377, 441, 456
TauI	GCSGC	3 cut(s)	470, 473, 576
TfiI	GAWTC	4 cut(s)	16, 57, 201, 511
Tru1I	TTAA	3 cut(s)	498, 569, 589
Tru9I	TTAA	3 cut(s)	498, 569, 589
TseFI	GTSAC	1 cut(s)	449
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	435
Van91I	CCANNNNNTGG	1 cut(s)	301
Vha464I	CTTAAG	1 cut(s)	568
VpaK11BI	GGWCC	3 cut(s)	246, 271, 289
XbaI	TCTAGA	1 cut(s)	19
XceI	RCATGY	1 cut(s)	108
XmiI	GTMKAC	1 cut(s)	377
XspI	CTAG	2 cut(s)	20, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.