Rroxscaffold_7G00162070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0021670
Physical Location & Seq
Reverse (-)
4709534 .. 4712723
3190 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00162070.1

Sequence Viewer

Length: 459 bp
ATGGGCAATGGCCCTTTCGACTACGGCATAGGGGCACGCCGCCGGATAGGGGTGAAACCCTGCGATTTTCTCTCCGGCGCATGCGCGCATTCTCCCTTTTGTTTAGTCTATAAAGCAGCGCAAGAGTCATTAGATTTTGAAAGGAAGATTAGGGATGACAAAAATCTCCAGCGGGAGGAGCTCCATTGGATACCCGCCCCTAATGGAGGGAGACTTCGAGAGACAAATGGGGAATGGGGATGGCGATTCCCAATCCCCTTGATGGAATTATGGAGAAGGGAATTGGGTACTGGGTGGTGGTGGCGGCAGATTGAGCGGACTAGTGGTGGAGATGCGTCGTTGAAGAATGCCGCGGGCGTGGGGTGGGTCGGAGACAATGACGGAATAGATGCTAGCGTCCTCGACATTGGTGACTTTGACGATGGCGCCGCCGCAGCATCTTGGCACGGACAACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.94

Weight (kDa)

5.36

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021670)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004961.1_g000018
rosa_roxburghii Rroxscaffold_7G00162070
rosa_samantha Rh3CG236200 Rh6AG459000 Rh7AG289400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 425
AccBSI CCGCTC 1 cut(s) 316
AccII CGCG 2 cut(s) 86, 353
AciI CCGC 9 cut(s) 40, 172, 195, 304, 316, 351, 353, 429, 432
AcyI GRCGYC 1 cut(s) 426
AfaI GTAC 1 cut(s) 289
AfiI CCNNNNNNNGG 4 cut(s) 49, 175, 206, 262
AgsI TTSAA 2 cut(s) 140, 343
AhlI ACTAGT 1 cut(s) 320
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 3 cut(s) 205, 215, 366
AoxI GGCC 1 cut(s) 10
ApeKI GCWGC 2 cut(s) 116, 434
AspLEI GCGC 5 cut(s) 80, 86, 88, 121, 428
AspS9I GGNCC 1 cut(s) 11
AsuHPI GGTGA 2 cut(s) 64, 422
AsuNHI GCTAGC 1 cut(s) 392
BaeGI GKGCMC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 425
BanII GRGCYC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 2 cut(s) 128, 446
BccI CCATC 3 cut(s) 234, 256, 416
BceAI ACGGC 1 cut(s) 40
BciVI GTATCC 1 cut(s) 183
BcoDI GTCTC 3 cut(s) 205, 215, 366
BcuI ACTAGT 1 cut(s) 320
BfaI CTAG 2 cut(s) 321, 393
BfoI RGCGCY 1 cut(s) 429
BfuI GTATCC 1 cut(s) 183
BisI GCNGC 7 cut(s) 40, 117, 305, 351, 429, 432, 435
BlsI GCNGC 7 cut(s) 41, 118, 306, 352, 430, 433, 436
BmgT120I GGNCC 1 cut(s) 11
BmiI GGNNCC 1 cut(s) 427
BmrI ACTGGG 1 cut(s) 300
BmsI GCATC 3 cut(s) 322, 379, 446
BmtI GCTAGC 1 cut(s) 396
BmuI ACTGGG 1 cut(s) 300
BpmI CTGGAG 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 351
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 175, 206, 262
Bse1I ACTGG 1 cut(s) 295
Bse3DI GCAATG 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 351
BseGI GGATG 2 cut(s) 160, 245
BseLI CCNNNNNNNGG 4 cut(s) 49, 175, 206, 262
BseMI GCAATG 1 cut(s) 13
BseNI ACTGG 1 cut(s) 295
BsePI GCGCGC 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 191
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 2 cut(s) 128, 446
Bsh1236I CGCG 2 cut(s) 86, 353
BshFI GGCC 1 cut(s) 12
BshNI GGYRCC 1 cut(s) 425
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 2 cut(s) 43, 75
BslI CCNNNNNNNGG 4 cut(s) 49, 175, 206, 262
BsmAI GTCTC 3 cut(s) 205, 215, 366
BsmI GAATGC 2 cut(s) 88, 352
BsnI GGCC 1 cut(s) 12
Bsp1286I GDGCHC 2 cut(s) 37, 183
BspACI CCGC 9 cut(s) 40, 172, 195, 304, 316, 351, 353, 429, 432
BspANI GGCC 1 cut(s) 12
BspFNI CGCG 2 cut(s) 86, 353
BspLI GGNNCC 1 cut(s) 427
BspOI GCTAGC 1 cut(s) 396
BspT107I GGYRCC 1 cut(s) 425
BsrBI CCGCTC 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 13
BsrI ACTGG 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 351
BssHII GCGCGC 1 cut(s) 84
BssNI GRCGYC 1 cut(s) 426
BstACI GRCGYC 1 cut(s) 426
BstC8I GCNNGC 5 cut(s) 37, 82, 86, 355, 394
BstDSI CCRYGG 1 cut(s) 351
BstENI CCTNNNNNAGG 1 cut(s) 204
BstF5I GGATG 2 cut(s) 160, 245
BstFNI CGCG 2 cut(s) 86, 353
BstH2I RGCGCY 1 cut(s) 429
BstHHI GCGC 5 cut(s) 80, 86, 88, 121, 428
BstMAI GTCTC 3 cut(s) 205, 215, 366
BstMWI GCNNNNNNNGC 3 cut(s) 178, 313, 434
BstNSI RCATGY 1 cut(s) 84
BstSLI GKGCMC 1 cut(s) 37
BstUI CGCG 2 cut(s) 86, 353
BstV1I GCAGC 2 cut(s) 128, 446
BsuI GTATCC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 12
BtgI CCRYGG 1 cut(s) 351
BtsCI GGATG 2 cut(s) 160, 245
Cac8I GCNNGC 5 cut(s) 37, 82, 86, 355, 394
CfoI GCGC 5 cut(s) 80, 86, 88, 121, 428
Cfr13I GGNCC 1 cut(s) 11
Cfr42I CCGCGG 1 cut(s) 354
CseI GACGC 2 cut(s) 324, 385
Csp6I GTAC 1 cut(s) 288
CviAII CATG 1 cut(s) 81
CviJI RGCY 2 cut(s) 12, 181
CviKI_1 RGCY 2 cut(s) 12, 181
CviQI GTAC 1 cut(s) 288
DinI GGCGCC 1 cut(s) 427
Ecl136II GAGCTC 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 183
Eco53kI GAGCTC 1 cut(s) 181
EcoICRI GAGCTC 1 cut(s) 181
EcoNI CCTNNNNNAGG 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 183
EgeI GGCGCC 1 cut(s) 427
EheI GGCGCC 1 cut(s) 427
FaeI CATG 1 cut(s) 84
FaiI YATR 4 cut(s) 29, 82, 111, 271
FatI CATG 1 cut(s) 80
FauI CCCGC 3 cut(s) 165, 202, 346
Fnu4HI GCNGC 7 cut(s) 40, 117, 305, 351, 429, 432, 435
FokI GGATG 2 cut(s) 167, 252
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 7 cut(s) 40, 117, 305, 351, 429, 432, 435
FspBI CTAG 2 cut(s) 321, 393
GlaI GCGC 5 cut(s) 79, 85, 87, 120, 427
GluI GCNGC 7 cut(s) 40, 117, 305, 351, 429, 432, 435
GsuI CTGGAG 1 cut(s) 152
HaeII RGCGCY 1 cut(s) 429
HaeIII GGCC 1 cut(s) 12
HapII CCGG 2 cut(s) 43, 75
HgaI GACGC 2 cut(s) 324, 385
HhaI GCGC 5 cut(s) 80, 86, 88, 121, 428
Hin1I GRCGYC 1 cut(s) 426
Hin1II CATG 1 cut(s) 84
Hin6I GCGC 5 cut(s) 78, 84, 86, 119, 426
HinP1I GCGC 5 cut(s) 78, 84, 86, 119, 426
HinfI GANTC 2 cut(s) 125, 246
HpaII CCGG 2 cut(s) 43, 75
HphI GGTGA 2 cut(s) 64, 422
Hpy188I TCNGA 1 cut(s) 371
Hpy188III TCNNGA 1 cut(s) 218
Hpy99I CGWCG 1 cut(s) 340
HpyAV CCTTC 1 cut(s) 270
HpyF10VI GCNNNNNNNGC 3 cut(s) 178, 313, 434
Hsp92I GRCGYC 1 cut(s) 426
Hsp92II CATG 1 cut(s) 84
HspAI GCGC 5 cut(s) 78, 84, 86, 119, 426
KasI GGCGCC 1 cut(s) 425
KspI CCGCGG 1 cut(s) 354
LmnI GCTCC 2 cut(s) 178, 186
LpnPI CCDG 5 cut(s) 56, 73, 88, 182, 276
Lsp1109I GCAGC 2 cut(s) 128, 446
LweI GCATC 3 cut(s) 322, 379, 446
MaeI CTAG 2 cut(s) 321, 393
MaeIII GTNAC 1 cut(s) 410
MbiI CCGCTC 1 cut(s) 316
MboII GAAGA 2 cut(s) 157, 355
MhlI GDGCHC 2 cut(s) 37, 183
MluCI AATT 2 cut(s) 266, 281
Mly113I GGCGCC 1 cut(s) 426
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 349
MnlI CCTC 3 cut(s) 169, 200, 410
MseI TTAA 1 cut(s) 457
MspA1I CMGCKG 2 cut(s) 172, 353
MspI CCGG 2 cut(s) 43, 75
Mva1269I GAATGC 2 cut(s) 88, 352
MvnI CGCG 2 cut(s) 86, 353
MwoI GCNNNNNNNGC 3 cut(s) 178, 313, 434
NarI GGCGCC 1 cut(s) 426
NheI GCTAGC 1 cut(s) 392
NlaIII CATG 1 cut(s) 84
NlaIV GGNNCC 1 cut(s) 427
NmuCI GTSAC 1 cut(s) 410
NspI RCATGY 1 cut(s) 84
PaeI GCATGC 1 cut(s) 84
PauI GCGCGC 1 cut(s) 84
PctI GAATGC 2 cut(s) 88, 352
PfeI GAWTC 1 cut(s) 246
PkrI GCNGC 7 cut(s) 41, 118, 306, 352, 430, 433, 436
PleI GAGTC 1 cut(s) 133
PluTI GGCGCC 1 cut(s) 429
PpsI GAGTC 1 cut(s) 133
Psp124BI GAGCTC 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 427
PspPI GGNCC 1 cut(s) 11
PteI GCGCGC 1 cut(s) 84
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
SacI GAGCTC 1 cut(s) 183
SacII CCGCGG 1 cut(s) 354
SaqAI TTAA 1 cut(s) 457
SatI GCNGC 7 cut(s) 40, 117, 305, 351, 429, 432, 435
Sau96I GGNCC 1 cut(s) 11
SchI GAGTC 1 cut(s) 134
SduI GDGCHC 2 cut(s) 37, 183
SetI ASST 2 cut(s) 183, 457
SfaNI GCATC 3 cut(s) 322, 379, 446
SfoI GGCGCC 1 cut(s) 427
Sfr303I CCGCGG 1 cut(s) 354
SgrBI CCGCGG 1 cut(s) 354
SpeI ACTAGT 1 cut(s) 320
SphI GCATGC 1 cut(s) 84
Sse9I AATT 2 cut(s) 266, 281
SsiI CCGC 9 cut(s) 40, 172, 195, 304, 316, 351, 353, 429, 432
SspDI GGCGCC 1 cut(s) 425
SspMI CTAG 2 cut(s) 321, 393
SstI GAGCTC 1 cut(s) 183
TaqI TCGA 3 cut(s) 18, 217, 402
TasI AATT 2 cut(s) 266, 281
TauI GCSGC 5 cut(s) 42, 307, 353, 431, 434
TfiI GAWTC 1 cut(s) 246
Tru1I TTAA 1 cut(s) 457
Tru9I TTAA 1 cut(s) 457
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 2 cut(s) 116, 434
Tsp45I GTSAC 1 cut(s) 410
TspGWI ACGGA 1 cut(s) 396
XagI CCTNNNNNAGG 1 cut(s) 204
XceI RCATGY 1 cut(s) 84
XspI CTAG 2 cut(s) 321, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.