Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005098.1

Orthogroup ID

OG0023111

Physical Location & Seq

Genomic Coordinates Reverse (-)

49614 .. 51172

Gene Structure 1559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005098.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgagagacttcgtcatagagattgaggcaaagtgtcgaaccttgtggcaagaagagaacgatgctgctaatgaatacgaatccaaggtaatccaacacttgaaacaagagttttgtgcagactatgttagactagcaggtgacaatgtcaccttgccttctttagttttagctgtgcccagcaagtttgaaccaagttttccaatatgccttgcaagattacttcatatatattctgctgatgccgtacgattctccttggctgatgctttttatcggactgaggagctctggttcatctttgagacaaggcgcccctttcggatagctagttatgcagacagggcatttgctaatgagataaacattgctgtgaacaagaccaggcaaagcagatttggacaagccatcaattctggttttcatggccttcaatgtgccagggattggtacactagggaatgtggttccgcgggcatgaaccatgatctggtgcggcatttcgtagatgtgcagacgagccttattgctccgatctgtccacagtccacactatgccgaatatgtttggaagctgcttttgaagaagggaacgatagcaagaaaagtgctccagttaaatttgaggatcaggccttggagttgaagcgattaccatttggagaggatcagcaagtgattgaacagcttgatgccgacgtatggaaatctgacagcagatgtgaagctaccacatcaagatcagatgatgattattgtggcactgatcttaaccttgcttccttatatcgtcctccgtttaagctattgttcctgagctcctttgaatacgcaaaaagaggctgcttgtgtccaggacaaatggctcctggtgaacttgcaatccgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001101 GO:0003674 GO:0003824 GO:0004812 GO:0004819 GO:0004823 GO:0004832 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006425 GO:0006429 GO:0006438 GO:0006518 GO:0006520 GO:0006605 GO:0006622 GO:0006623 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007034 GO:0007041 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009267 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009719 GO:0009892 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010506 GO:0010507 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016070 GO:0016604 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0023051 GO:0023056 GO:0030054 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032006 GO:0032008 GO:0032535 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034198 GO:0034613 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042594 GO:0042886 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043170 GO:0043200 GO:0043201 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0060589 GO:0061462 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071233 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090066 GO:0090304 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903432 GO:1904263 GO:1990253 GO:1990928

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1

Protein Analysis

296

Amino Acids

33.67

Weight (kDa)

5.21

Isoelectric Point (pI)

56.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023111)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005098.1_g000014
rosa_rugosa	Rorug04G0430500
rosa_samantha	Rh5CG065500 Rh5CG065600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	128
Acc36I	ACCTGC	1 cut(s)	128
AccB1I	GGYRCC	1 cut(s)	312
AccB7I	CCANNNNNTGG	2 cut(s)	447, 490
AccII	CGCG	1 cut(s)	473
AciI	CCGC	4 cut(s)	471, 473, 496, 886
AclWI	GGATC	2 cut(s)	636, 675
AcsI	RAATTY	1 cut(s)	620
AcyI	GRCGYC	1 cut(s)	313
AfaI	GTAC	2 cut(s)	249, 452
AfiI	CCNNNNNNNGG	3 cut(s)	447, 490, 702
AgsI	TTSAA	7 cut(s)	103, 191, 434, 584, 646, 683, 827
AjnI	CCWGG	4 cut(s)	383, 440, 853, 868
AloI	GAACNNNNNNTCC	3 cut(s)	278, 310, 867
AluBI	AGCT	8 cut(s)	173, 289, 329, 575, 688, 728, 805, 819
AluI	AGCT	8 cut(s)	173, 289, 329, 575, 688, 728, 805, 819
Alw21I	GWGCWC	3 cut(s)	291, 613, 821
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	2 cut(s)	636, 675
AoxI	GGCC	2 cut(s)	427, 633
ApeKI	GCWGC	3 cut(s)	65, 575, 843
ApoI	RAATTY	1 cut(s)	620
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
AspLEI	GCGC	1 cut(s)	315
AsuHPI	GGTGA	3 cut(s)	142, 152, 884
BaeGI	GKGCMC	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	312
BanII	GRGCYC	2 cut(s)	291, 821
Bbv12I	GWGCWC	3 cut(s)	291, 613, 821
BbvI	GCAGC	3 cut(s)	52, 562, 830
BccI	CCATC	1 cut(s)	416
BceAI	ACGGC	1 cut(s)	230
BciT130I	CCWGG	4 cut(s)	385, 442, 855, 870
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	3 cut(s)	134, 330, 456
BfoI	RGCGCY	1 cut(s)	316
BfuAI	ACCTGC	1 cut(s)	128
BisI	GCNGC	4 cut(s)	66, 497, 576, 844
BlsI	GCNGC	4 cut(s)	67, 498, 577, 845
Bme1390I	CCNGG	4 cut(s)	385, 442, 855, 870
BmiI	GGNNCC	3 cut(s)	314, 469, 867
BmrFI	CCNGG	4 cut(s)	385, 442, 855, 870
BmsI	GCATC	4 cut(s)	52, 232, 256, 682
BpmI	CTGGAG	1 cut(s)	597
Bpu10I	CCTNAGC	1 cut(s)	815
BsaHI	GRCGYC	1 cut(s)	313
BsaJI	CCNNGG	5 cut(s)	84, 258, 441, 471, 636
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	3 cut(s)	447, 490, 702
Bse1I	ACTGG	1 cut(s)	614
Bse3DI	GCAATG	1 cut(s)	366
BseBI	CCWGG	4 cut(s)	385, 442, 855, 870
BseDI	CCNNGG	5 cut(s)	84, 258, 441, 471, 636
BseLI	CCNNNNNNNGG	3 cut(s)	447, 490, 702
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	2 cut(s)	273, 806
BseNI	ACTGG	1 cut(s)	614
BseRI	GAGGAG	1 cut(s)	299
BseSI	GKGCMC	1 cut(s)	180
BseXI	GCAGC	3 cut(s)	52, 562, 830
BseYI	CCCAGC	1 cut(s)	179
BsgI	GTGCAG	2 cut(s)	138, 533
Bsh1236I	CGCG	1 cut(s)	473
BshFI	GGCC	2 cut(s)	429, 635
BshNI	GGYRCC	1 cut(s)	312
BsiHKAI	GWGCWC	3 cut(s)	291, 613, 821
BsiWI	CGTACG	1 cut(s)	247
BslI	CCNNNNNNNGG	3 cut(s)	447, 490, 702
BsmAI	GTCTC	1 cut(s)	299
BsnI	GGCC	2 cut(s)	429, 635
Bsp1286I	GDGCHC	4 cut(s)	180, 291, 613, 821
Bsp143I	GATC	6 cut(s)	487, 534, 628, 667, 740, 766
BspACI	CCGC	4 cut(s)	471, 473, 496, 886
BspANI	GGCC	2 cut(s)	429, 635
BspCNI	CTCAG	2 cut(s)	274, 807
BspFNI	CGCG	1 cut(s)	473
BspLI	GGNNCC	3 cut(s)	314, 469, 867
BspMI	ACCTGC	1 cut(s)	128
BspPI	GGATC	2 cut(s)	636, 675
BspT107I	GGYRCC	1 cut(s)	312
BsrDI	GCAATG	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	614
BssECI	CCNNGG	5 cut(s)	84, 258, 441, 471, 636
BssMI	GATC	6 cut(s)	487, 534, 628, 667, 740, 766
BssNI	GRCGYC	1 cut(s)	313
BssT1I	CCWWGG	3 cut(s)	84, 258, 636
Bst2UI	CCWGG	4 cut(s)	385, 442, 855, 870
Bst4CI	ACNGT	1 cut(s)	546
Bst6I	CTCTTC	1 cut(s)	48
BstACI	GRCGYC	1 cut(s)	313
BstC8I	GCNNGC	1 cut(s)	475
BstDEI	CTNAG	2 cut(s)	282, 815
BstDSI	CCRYGG	1 cut(s)	471
BstFNI	CGCG	1 cut(s)	473
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	6 cut(s)	490, 537, 631, 670, 743, 769
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	6 cut(s)	487, 534, 628, 667, 740, 766
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 344
BstNI	CCWGG	4 cut(s)	385, 442, 855, 870
BstSCI	CCNGG	4 cut(s)	383, 440, 853, 868
BstSLI	GKGCMC	1 cut(s)	180
BstUI	CGCG	1 cut(s)	473
BstV1I	GCAGC	3 cut(s)	52, 562, 830
BsuRI	GGCC	2 cut(s)	429, 635
BtgI	CCRYGG	1 cut(s)	471
BtsIMutI	CAGTG	1 cut(s)	762
BveI	ACCTGC	1 cut(s)	128
Cac8I	GCNNGC	1 cut(s)	475
CfoI	GCGC	1 cut(s)	315
Cfr42I	CCGCGG	1 cut(s)	474
Csp6I	GTAC	2 cut(s)	248, 451
CviAII	CATG	3 cut(s)	425, 478, 485
CviQI	GTAC	2 cut(s)	248, 451
DdeI	CTNAG	2 cut(s)	282, 815
DinI	GGCGCC	1 cut(s)	314
DpnI	GATC	6 cut(s)	489, 536, 630, 669, 742, 768
DpnII	GATC	6 cut(s)	487, 534, 628, 667, 740, 766
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Ecl136II	GAGCTC	2 cut(s)	289, 819
Eco130I	CCWWGG	3 cut(s)	84, 258, 636
Eco147I	AGGCCT	1 cut(s)	635
Eco24I	GRGCYC	2 cut(s)	291, 821
Eco53kI	GAGCTC	2 cut(s)	289, 819
EcoICRI	GAGCTC	2 cut(s)	289, 819
EcoRII	CCWGG	4 cut(s)	383, 440, 853, 868
EcoT14I	CCWWGG	3 cut(s)	84, 258, 636
EcoT38I	GRGCYC	2 cut(s)	291, 821
EgeI	GGCGCC	1 cut(s)	314
EheI	GGCGCC	1 cut(s)	314
ErhI	CCWWGG	3 cut(s)	84, 258, 636
FaeI	CATG	3 cut(s)	428, 481, 488
FatI	CATG	3 cut(s)	424, 477, 484
FauI	CCCGC	1 cut(s)	466
Fnu4HI	GCNGC	4 cut(s)	66, 497, 576, 844
FriOI	GRGCYC	2 cut(s)	291, 821
Fsp4HI	GCNGC	4 cut(s)	66, 497, 576, 844
FspBI	CTAG	3 cut(s)	134, 330, 456
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	4 cut(s)	66, 497, 576, 844
GsaI	CCCAGC	1 cut(s)	183
GsuI	CTGGAG	1 cut(s)	597
HaeII	RGCGCY	1 cut(s)	316
HaeIII	GGCC	2 cut(s)	429, 635
HhaI	GCGC	1 cut(s)	315
Hin1I	GRCGYC	1 cut(s)	313
Hin1II	CATG	3 cut(s)	428, 481, 488
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HinfI	GANTC	2 cut(s)	80, 252
HphI	GGTGA	3 cut(s)	142, 152, 884
Hpy166II	GTNNAC	5 cut(s)	376, 453, 542, 549, 875
Hpy188I	TCNGA	5 cut(s)	279, 324, 534, 712, 745
Hpy188III	TCNNGA	2 cut(s)	738, 814
Hpy8I	GTNNAC	5 cut(s)	376, 453, 542, 549, 875
Hpy99I	CGWCG	1 cut(s)	701
HpyAV	CCTTC	3 cut(s)	168, 440, 581
HpyCH4III	ACNGT	1 cut(s)	546
HpyCH4IV	ACGT	1 cut(s)	699
HpyCH4V	TGCA	5 cut(s)	119, 215, 338, 514, 881
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 344
HpyF3I	CTNAG	2 cut(s)	282, 815
HpySE526I	ACGT	1 cut(s)	699
Hsp92I	GRCGYC	1 cut(s)	313
Hsp92II	CATG	3 cut(s)	428, 481, 488
HspAI	GCGC	1 cut(s)	313
KasI	GGCGCC	1 cut(s)	312
KspI	CCGCGG	1 cut(s)	474
Kzo9I	GATC	6 cut(s)	487, 534, 628, 667, 740, 766
LmnI	GCTCC	5 cut(s)	286, 535, 616, 824, 871
Lsp1109I	GCAGC	3 cut(s)	52, 562, 830
LweI	GCATC	4 cut(s)	52, 232, 256, 682
MaeI	CTAG	3 cut(s)	134, 330, 456
MaeII	ACGT	1 cut(s)	699
MaeIII	GTNAC	2 cut(s)	140, 148
MalI	GATC	6 cut(s)	489, 536, 630, 669, 742, 768
MboI	GATC	6 cut(s)	487, 534, 628, 667, 740, 766
MboII	GAAGA	2 cut(s)	65, 596
MhlI	GDGCHC	4 cut(s)	180, 291, 613, 821
MluCI	AATT	2 cut(s)	412, 620
Mly113I	GGCGCC	1 cut(s)	313
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	6 cut(s)	19, 277, 619, 658, 804, 833
MseI	TTAA	3 cut(s)	618, 771, 801
MslI	CAYNNNNRTG	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	473
MspR9I	CCNGG	4 cut(s)	385, 442, 855, 870
MvaI	CCWGG	4 cut(s)	385, 442, 855, 870
MvnI	CGCG	1 cut(s)	473
MwoI	GCNNNNNNNGC	2 cut(s)	335, 344
NarI	GGCGCC	1 cut(s)	313
NdeII	GATC	6 cut(s)	487, 534, 628, 667, 740, 766
NlaIII	CATG	3 cut(s)	428, 481, 488
NlaIV	GGNNCC	3 cut(s)	314, 469, 867
NmuCI	GTSAC	2 cut(s)	140, 148
PaqCI	CACCTGC	1 cut(s)	128
PceI	AGGCCT	1 cut(s)	635
PfeI	GAWTC	2 cut(s)	80, 252
Pfl23II	CGTACG	1 cut(s)	247
PflFI	GACNNNGTC	2 cut(s)	11, 146
PflMI	CCANNNNNTGG	2 cut(s)	447, 490
PfoI	TCCNGGA	1 cut(s)	853
PkrI	GCNGC	4 cut(s)	67, 498, 577, 845
PluTI	GGCGCC	1 cut(s)	316
Psp124BI	GAGCTC	2 cut(s)	291, 821
Psp6I	CCWGG	4 cut(s)	383, 440, 853, 868
PspFI	CCCAGC	1 cut(s)	179
PspGI	CCWGG	4 cut(s)	383, 440, 853, 868
PspLI	CGTACG	1 cut(s)	247
PspN4I	GGNNCC	3 cut(s)	314, 469, 867
PsyI	GACNNNGTC	2 cut(s)	11, 146
RsaI	GTAC	2 cut(s)	249, 452
RsaNI	GTAC	2 cut(s)	248, 451
RseI	CAYNNNNRTG	1 cut(s)	371
SacI	GAGCTC	2 cut(s)	291, 821
SacII	CCGCGG	1 cut(s)	474
SaqAI	TTAA	3 cut(s)	618, 771, 801
SatI	GCNGC	4 cut(s)	66, 497, 576, 844
Sau3AI	GATC	6 cut(s)	487, 534, 628, 667, 740, 766
ScrFI	CCNGG	4 cut(s)	385, 442, 855, 870
SduI	GDGCHC	4 cut(s)	180, 291, 613, 821
SfaNI	GCATC	4 cut(s)	52, 232, 256, 682
SfoI	GGCGCC	1 cut(s)	314
Sfr303I	CCGCGG	1 cut(s)	474
SgrBI	CCGCGG	1 cut(s)	474
SmiMI	CAYNNNNRTG	1 cut(s)	371
Sse9I	AATT	2 cut(s)	412, 620
SseBI	AGGCCT	1 cut(s)	635
SsiI	CCGC	4 cut(s)	471, 473, 496, 886
SspDI	GGCGCC	1 cut(s)	312
SspMI	CTAG	3 cut(s)	134, 330, 456
SstI	GAGCTC	2 cut(s)	291, 821
StuI	AGGCCT	1 cut(s)	635
StyD4I	CCNGG	4 cut(s)	383, 440, 853, 868
StyI	CCWWGG	3 cut(s)	84, 258, 636
TaaI	ACNGT	1 cut(s)	546
TaiI	ACGT	1 cut(s)	702
TaqI	TCGA	1 cut(s)	37
TasI	AATT	2 cut(s)	412, 620
TauI	GCSGC	1 cut(s)	499
TfiI	GAWTC	2 cut(s)	80, 252
Tru1I	TTAA	3 cut(s)	618, 771, 801
Tru9I	TTAA	3 cut(s)	618, 771, 801
TscAI	CASTG	1 cut(s)	769
TseFI	GTSAC	2 cut(s)	140, 148
TseI	GCWGC	3 cut(s)	65, 575, 843
Tsp45I	GTSAC	2 cut(s)	140, 148
TspDTI	ATGAA	5 cut(s)	87, 215, 286, 413, 494
TspGWI	ACGGA	1 cut(s)	786
TspRI	CASTG	1 cut(s)	769
Tth111I	GACNNNGTC	2 cut(s)	11, 146
Van91I	CCANNNNNTGG	2 cut(s)	447, 490
XapI	RAATTY	1 cut(s)	620
XspI	CTAG	3 cut(s)	134, 330, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.