Rorug04G0430500

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003596
Physical Location & Seq
Reverse (-)
58911880 .. 58915958
4079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0430500.1

Sequence Viewer

Length: 870 bp
ATGGCGGAAAGAAACCATCTAAGCTTGAGAATGATCAATGGGGAACAAGCTACTTTGTCATCTTTGAATTTGTTGGAATCTGGCAGTAGTTGCTTGGCTTGCAAATTTCTTGCTCCAAGCGAATGGCAGAATATTACAGTTCATACTGTTACGCAATTCTCCCCTTCTCCTTTAATCTCTTGCACAGAAAGTATGCCTCAAGGTGCTACTGTTTCACAAATTACAGCCGCGAATTCAGAACAATCATGTGATCAATCAACATCATCTAGGGTCCTGCGAGATGTACATATCGTAAGAAATTACCTCAAAATGTTGGCTTACAGTTTCTGTAGATCCATGCTGCTTGCAAACTCGTCAGCTCGGTTAATGGAAGATTTCCTTCAGCTTGCTAAGGACAACACAGAGAAGGATCTTGAAACCTGTGGGACTCTTGGCGCCTTTCTTAAAAATGAAACATTCTACGTGACGACTCTGATCATACCCAAGCAGGAATCCACTTCCAACTCTTGTCAGGCAACAAATGACGAGGAAGTCTTTGCCATACAAAATGAACAATCACTTTTTCCTGTAGGATGGATCCATACACATCCTTCTCAGAGTTGTTTTATGTCATCAGTGGATTTACACACACATTATTCACGTCAGGTTATGGTACCTGAGGCTTTTGCCATTGTCATGGCCCCAACTGATACTTCAAGCTATGGAATATTCCGGCTATCTGACCCTGGTGGGATGAGTGTCTTGAAAAAGTGCCAAGATACAGGGTTCCACACTCACGAAGAAACAGGAGATGGGAGTCCCATTTACGAGCACTGCTCCAACGTCTACACAAACTCAAATCTGAGGTTTGAAATCTTTGACTTGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0001101 GO:0003674 GO:0003824 GO:0004812 GO:0004819 GO:0004823 GO:0004832 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006425 GO:0006429 GO:0006438 GO:0006518 GO:0006520 GO:0006605 GO:0006622 GO:0006623 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007034 GO:0007041 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009267 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009719 GO:0009892 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010506 GO:0010507 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016070 GO:0016604 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0023051 GO:0023056 GO:0030054 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032006 GO:0032008 GO:0032535 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034198 GO:0034613 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042594 GO:0042886 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043170 GO:0043200 GO:0043201 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0060589 GO:0061462 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071233 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090066 GO:0090304 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903432 GO:1904263 GO:1990253 GO:1990928
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
Anticodon_1 tRNA-synt_1

Protein Analysis

289

Amino Acids

32.14

Weight (kDa)

5.22

Isoelectric Point (pI)

64.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JAB PF01398 121 - 220 2.7e-14 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 530
Acc65I GGTACC 1 cut(s) 652
AccB1I GGYRCC 2 cut(s) 434, 652
AccI GTMKAC 1 cut(s) 825
AccII CGCG 1 cut(s) 230
AciI CCGC 2 cut(s) 5, 228
AclWI GGATC 4 cut(s) 327, 417, 571, 584
AcsI RAATTY 3 cut(s) 67, 104, 232
AcuI CTGAAG 1 cut(s) 365
AcyI GRCGYC 1 cut(s) 435
AfaI GTAC 2 cut(s) 285, 654
AgsI TTSAA 5 cut(s) 67, 416, 696, 745, 851
AjiI CACGTC 1 cut(s) 641
AjnI CCWGG 1 cut(s) 724
AjuI GAANNNNNNNTTGG 2 cut(s) 676, 708
AluBI AGCT 5 cut(s) 24, 50, 359, 385, 699
AluI AGCT 5 cut(s) 24, 50, 359, 385, 699
Alw21I GWGCWC 1 cut(s) 813
AlwI GGATC 4 cut(s) 327, 417, 571, 584
AlwNI CAGNNNCTG 1 cut(s) 327
AoxI GGCC 1 cut(s) 678
ApeKI GCWGC 1 cut(s) 340
ApoI RAATTY 3 cut(s) 67, 104, 232
Asp718I GGTACC 1 cut(s) 652
AspLEI GCGC 1 cut(s) 437
AspS9I GGNCC 2 cut(s) 271, 679
AvaII GGWCC 1 cut(s) 271
AxyI CCTNAGG 1 cut(s) 657
BamHI GGATCC 1 cut(s) 576
BanI GGYRCC 2 cut(s) 434, 652
Bbv12I GWGCWC 1 cut(s) 813
BbvI GCAGC 1 cut(s) 327
BccI CCATC 3 cut(s) 24, 567, 785
BciT130I CCWGG 1 cut(s) 726
BclI TGATCA 3 cut(s) 33, 250, 474
BfaI CTAG 1 cut(s) 267
BfmI CTRYAG 2 cut(s) 328, 567
BfoI RGCGCY 1 cut(s) 438
BisI GCNGC 2 cut(s) 228, 341
BlsI GCNGC 2 cut(s) 229, 342
Bme1390I CCNGG 1 cut(s) 726
Bme18I GGWCC 1 cut(s) 271
BmgBI CACGTC 1 cut(s) 641
BmgT120I GGNCC 2 cut(s) 271, 679
BmiI GGNNCC 6 cut(s) 272, 436, 578, 654, 681, 767
BmrFI CCNGG 1 cut(s) 726
BplI GAGNNNNNCTC 2 cut(s) 800, 832
Bpu10I CCTNAGC 1 cut(s) 390
BpuEI CTTGAG 2 cut(s) 46, 183
BsaAI YACGTR 1 cut(s) 463
BsaHI GRCGYC 1 cut(s) 435
BsaJI CCNNGG 1 cut(s) 724
Bse21I CCTNAGG 1 cut(s) 657
BseBI CCWGG 1 cut(s) 726
BseDI CCNNGG 1 cut(s) 724
BseGI GGATG 3 cut(s) 578, 586, 738
BseMII CTCAG 3 cut(s) 608, 648, 833
BseXI GCAGC 1 cut(s) 327
Bsh1236I CGCG 1 cut(s) 230
BshFI GGCC 1 cut(s) 680
BshNI GGYRCC 2 cut(s) 434, 652
BsiHKAI GWGCWC 1 cut(s) 813
BsiSI CCGG 1 cut(s) 712
BslFI GGGAC 2 cut(s) 439, 783
BsmFI GGGAC 2 cut(s) 439, 783
BsnI GGCC 1 cut(s) 680
Bsp1286I GDGCHC 1 cut(s) 813
Bsp1407I TGTACA 1 cut(s) 283
Bsp143I GATC 6 cut(s) 33, 250, 332, 409, 474, 576
BspACI CCGC 2 cut(s) 5, 228
BspANI GGCC 1 cut(s) 680
BspCNI CTCAG 3 cut(s) 607, 649, 834
BspFNI CGCG 1 cut(s) 230
BspLI GGNNCC 6 cut(s) 272, 436, 578, 654, 681, 767
BspPI GGATC 4 cut(s) 327, 417, 571, 584
BspT107I GGYRCC 2 cut(s) 434, 652
BsrGI TGTACA 1 cut(s) 283
BssECI CCNNGG 1 cut(s) 724
BssMI GATC 6 cut(s) 33, 250, 332, 409, 474, 576
BssNI GRCGYC 1 cut(s) 435
Bst2UI CCWGG 1 cut(s) 726
Bst4CI ACNGT 4 cut(s) 139, 148, 211, 323
BstACI GRCGYC 1 cut(s) 435
BstAPI GCANNNNNTGC 1 cut(s) 90
BstAUI TGTACA 1 cut(s) 283
BstBAI YACGTR 1 cut(s) 463
BstC8I GCNNGC 3 cut(s) 100, 345, 387
BstDEI CTNAG 5 cut(s) 20, 390, 594, 657, 842
BstF5I GGATG 3 cut(s) 578, 586, 738
BstFNI CGCG 1 cut(s) 230
BstH2I RGCGCY 1 cut(s) 438
BstHHI GCGC 1 cut(s) 437
BstKTI GATC 6 cut(s) 36, 253, 335, 412, 477, 579
BstMBI GATC 6 cut(s) 33, 250, 332, 409, 474, 576
BstMWI GCNNNNNNNGC 2 cut(s) 90, 99
BstNI CCWGG 1 cut(s) 726
BstSCI CCNGG 1 cut(s) 724
BstSFI CTRYAG 2 cut(s) 328, 567
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 327
BstX2I RGATCY 3 cut(s) 332, 409, 576
BstXI CCANNNNNNTGG 2 cut(s) 123, 676
BstYI RGATCY 3 cut(s) 332, 409, 576
Bsu36I CCTNAGG 1 cut(s) 657
BsuRI GGCC 1 cut(s) 680
BtrI CACGTC 1 cut(s) 641
BtsCI GGATG 3 cut(s) 578, 586, 738
BtsI GCAGTG 1 cut(s) 811
BtsIMutI CAGTG 2 cut(s) 621, 811
Cac8I GCNNGC 3 cut(s) 100, 345, 387
CaiI CAGNNNCTG 1 cut(s) 327
CfoI GCGC 1 cut(s) 437
Cfr13I GGNCC 2 cut(s) 271, 679
Csp6I GTAC 2 cut(s) 284, 653
CviAII CATG 3 cut(s) 246, 337, 676
CviQI GTAC 2 cut(s) 284, 653
DdeI CTNAG 5 cut(s) 20, 390, 594, 657, 842
DinI GGCGCC 1 cut(s) 436
DpnI GATC 6 cut(s) 35, 252, 334, 411, 476, 578
DpnII GATC 6 cut(s) 33, 250, 332, 409, 474, 576
DrdI GACNNNNNNGTC 1 cut(s) 530
DseDI GACNNNNNNGTC 1 cut(s) 530
EciI GGCGGA 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 365
Eco81I CCTNAGG 1 cut(s) 657
EcoO109I RGGNCCY 1 cut(s) 271
EcoRI GAATTC 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 724
EgeI GGCGCC 1 cut(s) 436
EheI GGCGCC 1 cut(s) 436
FaeI CATG 3 cut(s) 249, 340, 679
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FaqI GGGAC 2 cut(s) 439, 783
FatI CATG 3 cut(s) 245, 336, 675
FbaI TGATCA 3 cut(s) 33, 250, 474
FblI GTMKAC 1 cut(s) 825
Fnu4HI GCNGC 2 cut(s) 228, 341
FokI GGATG 3 cut(s) 573, 585, 745
Fsp4HI GCNGC 2 cut(s) 228, 341
FspBI CTAG 1 cut(s) 267
GlaI GCGC 1 cut(s) 436
GluI GCNGC 2 cut(s) 228, 341
HaeII RGCGCY 1 cut(s) 438
HaeIII GGCC 1 cut(s) 680
HapII CCGG 1 cut(s) 712
HhaI GCGC 1 cut(s) 437
Hin1I GRCGYC 1 cut(s) 435
Hin1II CATG 3 cut(s) 249, 340, 679
Hin6I GCGC 1 cut(s) 435
HinP1I GCGC 1 cut(s) 435
HindIII AAGCTT 1 cut(s) 22
HinfI GANTC 5 cut(s) 77, 427, 469, 491, 796
HpaII CCGG 1 cut(s) 712
Hpy166II GTNNAC 1 cut(s) 826
Hpy188I TCNGA 5 cut(s) 238, 474, 597, 721, 843
Hpy188III TCNNGA 3 cut(s) 413, 742, 776
Hpy8I GTNNAC 1 cut(s) 826
HpyAV CCTTC 4 cut(s) 174, 389, 400, 600
HpyCH4III ACNGT 4 cut(s) 139, 148, 211, 323
HpyCH4IV ACGT 3 cut(s) 462, 640, 822
HpyCH4V TGCA 3 cut(s) 102, 183, 347
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 99
HpyF3I CTNAG 5 cut(s) 20, 390, 594, 657, 842
HpySE526I ACGT 3 cut(s) 462, 640, 822
Hsp92I GRCGYC 1 cut(s) 435
Hsp92II CATG 3 cut(s) 249, 340, 679
HspAI GCGC 1 cut(s) 435
KasI GGCGCC 1 cut(s) 434
KpnI GGTACC 1 cut(s) 656
Ksp22I TGATCA 3 cut(s) 33, 250, 474
Kzo9I GATC 6 cut(s) 33, 250, 332, 409, 474, 576
LmnI GCTCC 2 cut(s) 118, 821
Lsp1109I GCAGC 1 cut(s) 327
MaeI CTAG 1 cut(s) 267
MaeII ACGT 3 cut(s) 462, 640, 822
MaeIII GTNAC 2 cut(s) 148, 463
MalI GATC 6 cut(s) 35, 252, 334, 411, 476, 578
MboI GATC 6 cut(s) 33, 250, 332, 409, 474, 576
MboII GAAGA 2 cut(s) 383, 791
MflI RGATCY 3 cut(s) 332, 409, 576
MhlI GDGCHC 1 cut(s) 813
MluCI AATT 6 cut(s) 67, 104, 155, 219, 232, 298
Mly113I GGCGCC 1 cut(s) 435
MlyI GAGTC 3 cut(s) 421, 463, 805
MmeI TCCRAC 3 cut(s) 54, 525, 843
MnlI CCTC 5 cut(s) 207, 314, 520, 652, 837
MseI TTAA 3 cut(s) 173, 365, 444
MslI CAYNNNNRTG 1 cut(s) 674
MspI CCGG 1 cut(s) 712
MspR9I CCNGG 1 cut(s) 726
MvaI CCWGG 1 cut(s) 726
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 2 cut(s) 90, 99
NarI GGCGCC 1 cut(s) 435
NdeII GATC 6 cut(s) 33, 250, 332, 409, 474, 576
NlaIII CATG 3 cut(s) 249, 340, 679
NlaIV GGNNCC 6 cut(s) 272, 436, 578, 654, 681, 767
NmuCI GTSAC 1 cut(s) 463
PfeI GAWTC 2 cut(s) 77, 491
PkrI GCNGC 2 cut(s) 229, 342
PleI GAGTC 3 cut(s) 421, 463, 804
PluTI GGCGCC 1 cut(s) 438
PpsI GAGTC 3 cut(s) 421, 463, 804
Ppu21I YACGTR 1 cut(s) 463
PpuMI RGGWCCY 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 724
PspGI CCWGG 1 cut(s) 724
PspN4I GGNNCC 6 cut(s) 272, 436, 578, 654, 681, 767
PspPI GGNCC 2 cut(s) 271, 679
PspPPI RGGWCCY 1 cut(s) 271
PstNI CAGNNNCTG 1 cut(s) 327
PsuI RGATCY 3 cut(s) 332, 409, 576
RsaI GTAC 2 cut(s) 285, 654
RsaNI GTAC 2 cut(s) 284, 653
RseI CAYNNNNRTG 1 cut(s) 674
SaqAI TTAA 3 cut(s) 173, 365, 444
SatI GCNGC 2 cut(s) 228, 341
Sau3AI GATC 6 cut(s) 33, 250, 332, 409, 474, 576
Sau96I GGNCC 2 cut(s) 271, 679
SchI GAGTC 3 cut(s) 421, 463, 805
ScrFI CCNGG 1 cut(s) 726
SduI GDGCHC 1 cut(s) 813
SfcI CTRYAG 2 cut(s) 328, 567
SfoI GGCGCC 1 cut(s) 436
SinI GGWCC 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 674
SmlI CTYRAG 2 cut(s) 25, 198
SmoI CTYRAG 2 cut(s) 25, 198
Sse9I AATT 6 cut(s) 67, 104, 155, 219, 232, 298
SsiI CCGC 2 cut(s) 5, 228
SspDI GGCGCC 1 cut(s) 434
SspI AATATT 2 cut(s) 133, 708
SspMI CTAG 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 724
TaaI ACNGT 4 cut(s) 139, 148, 211, 323
TaiI ACGT 3 cut(s) 465, 643, 825
TasI AATT 6 cut(s) 67, 104, 155, 219, 232, 298
TatI WGTACW 1 cut(s) 283
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 2 cut(s) 77, 491
Tru1I TTAA 3 cut(s) 173, 365, 444
Tru9I TTAA 3 cut(s) 173, 365, 444
TscAI CASTG 2 cut(s) 621, 818
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 1 cut(s) 340
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 3 cut(s) 131, 465, 564
TspRI CASTG 2 cut(s) 621, 818
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 3 cut(s) 67, 104, 232
XmiI GTMKAC 1 cut(s) 825
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.