FvH4_3g04783

RNA polymerase-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003596
Physical Location & Seq
Reverse (-)
2748427 .. 2751937
3511 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04783.t3

Sequence Viewer

Length: 1974 bp
ATGGCGGATTTGGATGATTTGCTCTTGGAGGCTGCAGGAAGAACAAGTTCGGGTCGGAAAAGCCGGCACTCACATTCATCTTCAAAGAGGAGACGTGATGATTCATATTCTGATGGTGGAAGTGACTCTAGGGGTGATGACTCTGATGATGGTCGTGGCTATGCGAGTAGGAAACCCTCAGGATCTCAAGTTCCTTTGAAGAAGCGGCTGGACCCTTCAGAAGTAGGTGATGAACATGACAGCCAGGATGAAGGTGATTATAATGATAGTGGCTCTGATCGTGGGGGTGAGAGCAACGAATCTGATGTCGGCAGCGATCTTTACAAAGATGAAAACGACAGGCGAAAGCTTGCGGAAATGTCTGAACTTCAAAGAGAGCTGATTCTGTCTGATAGAGCACAGAAGAAAGATGATAAGAGTCTAAAGGAGAAATTCAGACCGAAGTGGGATAAAGGGAAGGCTACACAGTCCAGGAAAGTGACTCCACCTCTCCCATCTTCTCGAGTGCGCTCCTCAGCTAGATCTGCTGACAGGGCAGCTGCCAAAGATGATGCATTGAATGAGTTACGAGCAAAACGTTTGAAACAGCAGGACCCTGAAGCTCACCGTAAATTGAGAGATGTATCTAGAGGAAGTGTGGGGAGTAAGAATTTCTCACACACCATCAAGAAGTCTTTCTCTGCTGTCCGTCGGAGTAGCTCTAGTCAGAGTGACAGTGAAAGTCGGTCTCATAGTGATGATGATGGGTCAAGTGCAGATGATGCTATTGACAGTGATGATGAAAGGGGCAATCAGGGACTAACATTTGAAGATATAAAGGAAATTACCATTCGGAGGTCAAGACTTGCAAAGTGGCTTATGGAACCGTTTTTTGAAGAATTAATCGTGGGTTGCTGTGTACGGGTTGGAATTGGGAAGACTAAGTCTGGGCGGCCCATCTACAGGCTGTGCTCAGTCTGTAATGTGGACTCTTCAGATCCTGATCGGCAGTACAAACTAGAGAATAAAACCACACACAAGTATCTGAATGTGGTTTGGGGCAATGAAAACTCCGCTGCTCGGTGGCAGATGGCTATGGTTTCAGACTCTTTACCTCTAGAAGAGGAGTATGATCAGTGGGTTAGAGAGGTGGAGAAAAATGGTGGCCGCTTGCCAAGCAAAGAGGATGTGCTGGAAAAAAAGGAAGCCATAAAAAAAACCAATACATTTGTCTACTCAGCCAAAACTGTGAAGCAGATGATACAGGAGAAAAAATCTGCTTCATCAAGGCCATTGAACATTGCGCTTGAGAAGGACCGGTTGAGGAGGGAATTGGAAATTGCACAAAGCAAGCATGATGATGCAGAGGTGGAAAGGATCAAGGCAAGGCTTGAGCAGTTGGAAGCACGGCAACAATCACAGGGGAAAGATAGCAAGGCTGTTAGGCTTGCTGAGATGAACAGAAAGAATAGAGTTGATAATTTCAAGAATGCCTCGGGATTAAAACCTGTAAAAACGGGTTTAAAAGCTGGGGAGGCTGGTTATGATCCATTTTCGAGGAGATGGACCAGGTCAAGAAATTACTATGTTTCAAAGCCTGATGAACAAAAAGATGATGCAGAGGCCAATGCTGTTGCTGCTGAGTCATTGGCAGAGGTAGAAACTAATGGAACAGGAGGAGTAGTAGCAGTACGAGCTGGCTTGGAAGCCACAGCGGCAGCTCTGGAAGCTGCAGCCGGTGCTGGGAAGTTGATTGATACGATGGCTCCGGTTGATCAAGGAACATCGTCAAATCCATTGCACAATTTTGAGCTGCCAATCTCGTTGGCCACACTTCAGAAGTTTGGTGGCCCGCAAGGAGCTCAGGAAGGATTCATGGCAAGAAAACAAAGGATAGAAGCAACAGTTGGTGTCCGAGTACCAGAGGATGATGGGAGGAGGCACGCATTGACGCTTTCAGTTAGTGACTACAAGAGAAGAAGAGGGCTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000428 GO:0000988 GO:0000989 GO:0000993 GO:0001076 GO:0001098 GO:0001099 GO:0001701 GO:0001704 GO:0001706 GO:0001711 GO:0001824 GO:0001832 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007369 GO:0007492 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009790 GO:0009792 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019827 GO:0019899 GO:0030154 GO:0030880 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0034243 GO:0034968 GO:0035987 GO:0036211 GO:0040007 GO:0043009 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045165 GO:0045309 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048589 GO:0048598 GO:0048646 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050815 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051219 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0055029 GO:0060255 GO:0060795 GO:0061695 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:0097159 GO:0098727 GO:0099122 GO:0140110 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905269 GO:1990234 GO:1990269 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3

Protein Analysis

658

Amino Acids

73.04

Weight (kDa)

8.83

Isoelectric Point (pI)

52.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plus-3 PF03126 302 - 408 3e-30 Plus-3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 261
AccI GTMKAC 1 cut(s) 1212
AciI CCGC 8 cut(s) 5, 205, 353, 931, 1053, 1147, 1694, 1832
AclI AACGTT 1 cut(s) 577
AclWI GGATC 4 cut(s) 190, 971, 1364, 1520
AcoI YGGCCR 2 cut(s) 1144, 1806
AcsI RAATTY 2 cut(s) 431, 649
AcuI CTGAAG 4 cut(s) 201, 618, 957, 1799
AfaI GTAC 4 cut(s) 900, 992, 1671, 1899
AfiI CCNNNNNNNGG 4 cut(s) 834, 942, 1059, 1722
AgeI ACCGGT 1 cut(s) 1296
AjiI CACGTC 1 cut(s) 95
AjnI CCWGG 3 cut(s) 243, 470, 1547
AjuI GAANNNNNNNTTGG 2 cut(s) 1869, 1901
AloI GAACNNNNNNTCC 2 cut(s) 174, 206
Alw21I GWGCWC 3 cut(s) 400, 953, 1843
Alw26I GTCTC 2 cut(s) 85, 732
AlwI GGATC 4 cut(s) 190, 971, 1364, 1520
AlwNI CAGNNNCTG 1 cut(s) 980
Ama87I CYCGRG 2 cut(s) 501, 1474
AoxI GGCC 6 cut(s) 932, 1144, 1268, 1602, 1806, 1828
ApoI RAATTY 2 cut(s) 431, 649
ArsI GACNNNNNNTTYG 2 cut(s) 291, 323
AseI ATTAAT 1 cut(s) 881
AsiGI ACCGGT 1 cut(s) 1296
Asp700I GAANNNNTTC 2 cut(s) 46, 674
AspLEI GCGC 2 cut(s) 510, 1285
AspS9I GGNCC 6 cut(s) 211, 592, 933, 1294, 1545, 1829
AsuHPI GGTGA 5 cut(s) 146, 239, 266, 299, 596
AvaI CYCGRG 2 cut(s) 501, 1474
AvaII GGWCC 4 cut(s) 211, 592, 1294, 1545
AxyI CCTNAGG 1 cut(s) 178
BaeI ACNNNNGTAYC 2 cut(s) 1004, 1037
BalI TGGCCA 1 cut(s) 1808
BanII GRGCYC 1 cut(s) 1843
BbsI GAAGAC 1 cut(s) 923
Bbv12I GWGCWC 3 cut(s) 400, 953, 1843
BbvCI CCTCAGC 1 cut(s) 514
BceAI ACGGC 1 cut(s) 1403
BciT130I CCWGG 3 cut(s) 245, 472, 1549
BclI TGATCA 2 cut(s) 1111, 1753
BcoDI GTCTC 2 cut(s) 85, 732
BfaI CTAG 6 cut(s) 129, 519, 627, 702, 998, 1097
BfmI CTRYAG 3 cut(s) 33, 940, 1710
BglI GCCNNNNNGGC 1 cut(s) 1694
BglII AGATCT 1 cut(s) 521
Bme1390I CCNGG 3 cut(s) 245, 472, 1549
Bme18I GGWCC 4 cut(s) 211, 592, 1294, 1545
BmeT110I CYCGRG 2 cut(s) 501, 1474
BmgBI CACGTC 1 cut(s) 95
BmgT120I GGNCC 6 cut(s) 211, 592, 933, 1294, 1545, 1829
BmiI GGNNCC 4 cut(s) 213, 594, 864, 1746
BmrFI CCNGG 3 cut(s) 245, 472, 1549
BmsI GCATC 4 cut(s) 541, 751, 1330, 1585
BpiI GAAGAC 1 cut(s) 923
BplI GAGNNNNNCTC 1 cut(s) 1953
Bpu10I CCTNAGC 2 cut(s) 514, 1842
BpuEI CTTGAG 3 cut(s) 171, 1307, 1391
BsaBI GATNNNNATC 1 cut(s) 981
BsaI GGTCTC 1 cut(s) 732
BsaJI CCNNGG 1 cut(s) 1473
BsaWI WCCGGW 2 cut(s) 1296, 1747
BsaXI ACNNNNNCTCC 4 cut(s) 1647, 1677, 1729, 1759
Bsc4I CCNNNNNNNGG 4 cut(s) 834, 942, 1059, 1722
Bse118I RCCGGY 3 cut(s) 63, 1296, 1715
Bse21I CCTNAGG 1 cut(s) 178
Bse3DI GCAATG 3 cut(s) 1048, 1278, 1775
Bse8I GATNNNNATC 1 cut(s) 981
BseBI CCWGG 3 cut(s) 245, 472, 1549
BseDI CCNNGG 1 cut(s) 1473
BseGI GGATG 4 cut(s) 19, 253, 1171, 1912
BseJI GATNNNNATC 1 cut(s) 981
BseLI CCNNNNNNNGG 4 cut(s) 834, 942, 1059, 1722
BseMI GCAATG 3 cut(s) 1048, 1278, 1775
BseMII CTCAG 7 cut(s) 192, 528, 966, 1230, 1422, 1611, 1856
BseRI GAGGAG 7 cut(s) 103, 502, 1118, 1318, 1552, 1671, 1930
BseYI CCCAGC 2 cut(s) 1508, 1721
BsgI GTGCAG 1 cut(s) 774
BshFI GGCC 6 cut(s) 934, 1146, 1270, 1604, 1808, 1830
BshTI ACCGGT 1 cut(s) 1296
BsiHKAI GWGCWC 3 cut(s) 400, 953, 1843
BsiHKCI CYCGRG 2 cut(s) 501, 1474
BsiSI CCGG 4 cut(s) 64, 1297, 1716, 1748
BslFI GGGAC 1 cut(s) 810
BslI CCNNNNNNNGG 4 cut(s) 834, 942, 1059, 1722
BsmAI GTCTC 2 cut(s) 85, 732
BsmBI CGTCTC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 810
BsmI GAATGC 1 cut(s) 1474
BsnI GGCC 6 cut(s) 934, 1146, 1270, 1604, 1808, 1830
Bso31I GGTCTC 1 cut(s) 732
BsoBI CYCGRG 2 cut(s) 501, 1474
Bsp1286I GDGCHC 3 cut(s) 400, 953, 1843
BspACI CCGC 8 cut(s) 5, 205, 353, 931, 1053, 1147, 1694, 1832
BspANI GGCC 6 cut(s) 934, 1146, 1270, 1604, 1808, 1830
BspCNI CTCAG 7 cut(s) 191, 527, 965, 1229, 1423, 1612, 1855
BspLI GGNNCC 4 cut(s) 213, 594, 864, 1746
BspMAI CTGCAG 2 cut(s) 37, 1714
BspPI GGATC 4 cut(s) 190, 971, 1364, 1520
BspTNI GGTCTC 1 cut(s) 732
BsrDI GCAATG 3 cut(s) 1048, 1278, 1775
BsrFI RCCGGY 3 cut(s) 63, 1296, 1715
BssAI RCCGGY 3 cut(s) 63, 1296, 1715
BssECI CCNNGG 1 cut(s) 1473
Bst2UI CCWGG 3 cut(s) 245, 472, 1549
Bst4CI ACNGT 7 cut(s) 468, 608, 716, 773, 867, 1228, 1885
Bst6I CTCTTC 3 cut(s) 976, 1095, 1954
BstAPI GCANNNNNTGC 2 cut(s) 761, 1718
BstC8I GCNNGC 8 cut(s) 65, 351, 1151, 1331, 1428, 1678, 1832, 1923
BstDEI CTNAG 8 cut(s) 178, 514, 921, 952, 1216, 1431, 1620, 1842
BstF5I GGATG 4 cut(s) 19, 253, 1171, 1912
BstHHI GCGC 2 cut(s) 510, 1285
BstMAI GTCTC 2 cut(s) 85, 732
BstNI CCWGG 3 cut(s) 245, 472, 1549
BstSCI CCNGG 3 cut(s) 243, 470, 1547
BstSFI CTRYAG 3 cut(s) 33, 940, 1710
BstV2I GAAGAC 1 cut(s) 923
BstX2I RGATCY 3 cut(s) 182, 521, 976
BstYI RGATCY 3 cut(s) 182, 521, 976
Bsu36I CCTNAGG 1 cut(s) 178
BsuRI GGCC 6 cut(s) 934, 1146, 1270, 1604, 1808, 1830
BtrI CACGTC 1 cut(s) 95
BtsCI GGATG 4 cut(s) 19, 253, 1171, 1912
BtsIMutI CAGTG 3 cut(s) 721, 778, 1121
Cac8I GCNNGC 8 cut(s) 65, 351, 1151, 1331, 1428, 1678, 1832, 1923
CaiI CAGNNNCTG 1 cut(s) 980
CfoI GCGC 2 cut(s) 510, 1285
Cfr10I RCCGGY 3 cut(s) 63, 1296, 1715
Cfr13I GGNCC 6 cut(s) 211, 592, 933, 1294, 1545, 1829
CseI GACGC 1 cut(s) 1939
CsiI ACCWGGT 1 cut(s) 1547
Csp6I GTAC 4 cut(s) 899, 991, 1670, 1898
CspAI ACCGGT 1 cut(s) 1296
CviAII CATG 3 cut(s) 236, 1334, 1855
CviQI GTAC 4 cut(s) 899, 991, 1670, 1898
DdeI CTNAG 8 cut(s) 178, 514, 921, 952, 1216, 1431, 1620, 1842
DraI TTTAAA 1 cut(s) 1503
EaeI YGGCCR 2 cut(s) 1144, 1806
Eam1104I CTCTTC 3 cut(s) 976, 1095, 1954
EarI CTCTTC 3 cut(s) 976, 1095, 1954
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 1841
Eco24I GRGCYC 1 cut(s) 1843
Eco31I GGTCTC 1 cut(s) 732
Eco47I GGWCC 4 cut(s) 211, 592, 1294, 1545
Eco53kI GAGCTC 1 cut(s) 1841
Eco57I CTGAAG 4 cut(s) 201, 618, 957, 1799
Eco81I CCTNAGG 1 cut(s) 178
Eco88I CYCGRG 2 cut(s) 501, 1474
EcoICRI GAGCTC 1 cut(s) 1841
EcoO109I RGGNCCY 1 cut(s) 592
EcoRII CCWGG 3 cut(s) 243, 470, 1547
EcoT22I ATGCAT 1 cut(s) 556
EcoT38I GRGCYC 1 cut(s) 1843
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 3 cut(s) 239, 1337, 1858
FaqI GGGAC 1 cut(s) 810
FatI CATG 3 cut(s) 235, 1333, 1854
FauI CCCGC 1 cut(s) 1839
FbaI TGATCA 2 cut(s) 1111, 1753
FblI GTMKAC 1 cut(s) 1212
FokI GGATG 4 cut(s) 26, 260, 1178, 1919
FriOI GRGCYC 1 cut(s) 1843
FspBI CTAG 6 cut(s) 129, 519, 627, 702, 998, 1097
GlaI GCGC 2 cut(s) 509, 1284
GsaI CCCAGC 2 cut(s) 1512, 1725
HaeIII GGCC 6 cut(s) 934, 1146, 1270, 1604, 1808, 1830
HapII CCGG 4 cut(s) 64, 1297, 1716, 1748
HgaI GACGC 1 cut(s) 1939
HhaI GCGC 2 cut(s) 510, 1285
Hin1II CATG 3 cut(s) 239, 1337, 1858
Hin6I GCGC 2 cut(s) 508, 1283
HinP1I GCGC 2 cut(s) 508, 1283
HindIII AAGCTT 1 cut(s) 347
HpaII CCGG 4 cut(s) 64, 1297, 1716, 1748
HphI GGTGA 5 cut(s) 146, 239, 266, 299, 596
Hpy166II GTNNAC 3 cut(s) 899, 967, 1213
Hpy8I GTNNAC 3 cut(s) 899, 967, 1213
Hpy99I CGWCG 1 cut(s) 693
HpyAV CCTTC 5 cut(s) 225, 245, 451, 1285, 1841
HpyCH4III ACNGT 7 cut(s) 468, 608, 716, 773, 867, 1228, 1885
HpyCH4IV ACGT 2 cut(s) 94, 577
HpyCH4V TGCA 9 cut(s) 35, 554, 755, 848, 1322, 1343, 1598, 1712, 1780
HpyF3I CTNAG 8 cut(s) 178, 514, 921, 952, 1216, 1431, 1620, 1842
HpySE526I ACGT 2 cut(s) 94, 577
Hsp92II CATG 3 cut(s) 239, 1337, 1858
HspAI GCGC 2 cut(s) 508, 1283
KroI GCCGGC 1 cut(s) 63
KroNI GCCGGC 1 cut(s) 65
Ksp22I TGATCA 2 cut(s) 1111, 1753
LmnI GCTCC 3 cut(s) 515, 1750, 1838
LweI GCATC 4 cut(s) 541, 751, 1330, 1585
MabI ACCWGGT 1 cut(s) 1547
MaeI CTAG 6 cut(s) 129, 519, 627, 702, 998, 1097
MaeII ACGT 2 cut(s) 94, 577
MaeIII GTNAC 5 cut(s) 122, 478, 564, 710, 1943
MflI RGATCY 3 cut(s) 182, 521, 976
MhlI GDGCHC 3 cut(s) 400, 953, 1843
MlsI TGGCCA 1 cut(s) 1808
MluNI TGGCCA 1 cut(s) 1808
MlyI GAGTC 7 cut(s) 119, 134, 427, 475, 962, 1079, 1631
MmeI TCCRAC 4 cut(s) 35, 671, 886, 1359
Mox20I TGGCCA 1 cut(s) 1808
Mph1103I ATGCAT 1 cut(s) 556
MroNI GCCGGC 1 cut(s) 63
MroXI GAANNNNTTC 2 cut(s) 46, 674
MscI TGGCCA 1 cut(s) 1808
MseI TTAA 3 cut(s) 881, 1481, 1502
MslI CAYNNNNRTG 2 cut(s) 735, 1338
Msp20I TGGCCA 1 cut(s) 1808
MspA1I CMGCKG 3 cut(s) 539, 1055, 1694
MspI CCGG 4 cut(s) 64, 1297, 1716, 1748
MspR9I CCNGG 3 cut(s) 245, 472, 1549
Mva1269I GAATGC 1 cut(s) 1474
MvaI CCWGG 3 cut(s) 245, 472, 1549
NaeI GCCGGC 1 cut(s) 65
NgoMIV GCCGGC 1 cut(s) 63
NlaIII CATG 3 cut(s) 239, 1337, 1858
NlaIV GGNNCC 4 cut(s) 213, 594, 864, 1746
NmuCI GTSAC 4 cut(s) 122, 478, 710, 1943
NsiI ATGCAT 1 cut(s) 556
PaeR7I CTCGAG 1 cut(s) 501
PcsI WCGNNNNNNNCGW 1 cut(s) 574
PctI GAATGC 1 cut(s) 1474
PdiI GCCGGC 1 cut(s) 65
PdmI GAANNNNTTC 2 cut(s) 46, 674
PfeI GAWTC 4 cut(s) 101, 299, 382, 1851
PflFI GACNNNGTC 2 cut(s) 922, 1549
PfoI TCCNGGA 1 cut(s) 470
PinAI ACCGGT 1 cut(s) 1296
PleI GAGTC 7 cut(s) 119, 134, 426, 475, 962, 1079, 1630
PpsI GAGTC 7 cut(s) 119, 134, 426, 475, 962, 1079, 1630
PpuMI RGGWCCY 1 cut(s) 592
PshBI ATTAAT 1 cut(s) 881
PsiI TTATAA 1 cut(s) 261
Psp124BI GAGCTC 1 cut(s) 1843
Psp1406I AACGTT 1 cut(s) 577
Psp5II RGGWCCY 1 cut(s) 592
Psp6I CCWGG 3 cut(s) 243, 470, 1547
PspFI CCCAGC 2 cut(s) 1508, 1721
PspGI CCWGG 3 cut(s) 243, 470, 1547
PspN4I GGNNCC 4 cut(s) 213, 594, 864, 1746
PspPI GGNCC 6 cut(s) 211, 592, 933, 1294, 1545, 1829
PspPPI RGGWCCY 1 cut(s) 592
PstI CTGCAG 2 cut(s) 37, 1714
PstNI CAGNNNCTG 1 cut(s) 980
PsuI RGATCY 3 cut(s) 182, 521, 976
PsyI GACNNNGTC 2 cut(s) 922, 1549
PvuII CAGCTG 1 cut(s) 539
RsaI GTAC 4 cut(s) 900, 992, 1671, 1899
RsaNI GTAC 4 cut(s) 899, 991, 1670, 1898
RseI CAYNNNNRTG 2 cut(s) 735, 1338
SacI GAGCTC 1 cut(s) 1843
SaqAI TTAA 3 cut(s) 881, 1481, 1502
Sau96I GGNCC 6 cut(s) 211, 592, 933, 1294, 1545, 1829
SchI GAGTC 7 cut(s) 119, 134, 427, 475, 962, 1079, 1631
ScrFI CCNGG 3 cut(s) 245, 472, 1549
SduI GDGCHC 3 cut(s) 400, 953, 1843
SexAI ACCWGGT 1 cut(s) 1547
SfaNI GCATC 4 cut(s) 541, 751, 1330, 1585
SfcI CTRYAG 3 cut(s) 33, 940, 1710
Sfr274I CTCGAG 1 cut(s) 501
SinI GGWCC 4 cut(s) 211, 592, 1294, 1545
SlaI CTCGAG 1 cut(s) 501
SmiMI CAYNNNNRTG 2 cut(s) 735, 1338
SmlI CTYRAG 4 cut(s) 186, 501, 1286, 1370
SmoI CTYRAG 4 cut(s) 186, 501, 1286, 1370
SsiI CCGC 8 cut(s) 5, 205, 353, 931, 1053, 1147, 1694, 1832
SspMI CTAG 6 cut(s) 129, 519, 627, 702, 998, 1097
SstI GAGCTC 1 cut(s) 1843
StyD4I CCNGG 3 cut(s) 243, 470, 1547
TaaI ACNGT 7 cut(s) 468, 608, 716, 773, 867, 1228, 1885
TaiI ACGT 2 cut(s) 97, 580
TaqI TCGA 2 cut(s) 502, 1535
TaqII GACCGA 2 cut(s) 454, 714
TatI WGTACW 1 cut(s) 990
TauI GCSGC 4 cut(s) 208, 934, 1149, 1697
TfiI GAWTC 4 cut(s) 101, 299, 382, 1851
Tru1I TTAA 3 cut(s) 881, 1481, 1502
Tru9I TTAA 3 cut(s) 881, 1481, 1502
TscAI CASTG 3 cut(s) 721, 778, 1121
TseFI GTSAC 4 cut(s) 122, 478, 710, 1943
Tsp45I GTSAC 4 cut(s) 122, 478, 710, 1943
TspGWI ACGGA 1 cut(s) 677
TspRI CASTG 3 cut(s) 721, 778, 1121
Tth111I GACNNNGTC 2 cut(s) 922, 1549
VpaK11BI GGWCC 4 cut(s) 211, 592, 1294, 1545
VspI ATTAAT 1 cut(s) 881
XapI RAATTY 2 cut(s) 431, 649
XbaI TCTAGA 2 cut(s) 626, 1096
XhoI CTCGAG 1 cut(s) 501
XmiI GTMKAC 1 cut(s) 1212
XmnI GAANNNNTTC 2 cut(s) 46, 674
XspI CTAG 6 cut(s) 129, 519, 627, 702, 998, 1097
Zsp2I ATGCAT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.