FvH4_6g03621

RNA polymerase-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003596
Physical Location & Seq
Forward (+)
1985819 .. 1987871
2053 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03621.t1

Sequence Viewer

Length: 1473 bp
ATGCAGTTTGTTTCACTAGCTTATATATATAGAGTAATAGAGGAGTTCCCTCGTATTCGACCAAAAAAAAAAAAAAAACCGGGGTCTTCAGCGATCCACATCGGCGACATCGCTCTCCTCTCAGCTCGTCTCCTCTTCCCTGTTATTCAATCAATTTCGGAGCCCAGACAGGCACGGCCGATAATGGCGGATTTGGATGATTTGCTCTTGGAGGCAGCAGGAAGAACAAGTTCGGGGCGGAAAAGCCGGCACTCACATTCATCTTCAAAGAGGAGACGTGATGATTCATATTCTGATGGTGGAAGTGACTCTAGGGGTGATGACTCTGATGATGGTCGTGGCTATGCGAGTAGGAAACCCTCAGGATCTCAAGTTCCTTTGAAGAAGCGGCTGGACCCTTCAGAAGTAGATGATGAACGTGACAGCCAGGATGAAGGTGATTATAATGATAGTGGCTCTGATCGTGGGGGTGAGAGCAACGAATCTGATGTCGGCAGCGATCTTTACAAAGATGAAGATGACAGGCGAAAGCTTGCGGAGATGTCTGAACTTCAAAGAGAGCTGATTCTGTCTGATAGAGCACAGAAGAAAGATGATAAGAGTCTAAAGGAGAAATTCAGACCAAAGTGGGATAAAGGGAAGGCTACACAGTCCAGGAAAGTGACTCCGCCTCTCCCATCTTCTCGAGTGCGCTCCTCAGCTAGATCTGCTGACAGGGCAGCTGCCAAAGATGATGCATTGAATGAGTTACGAGCAAAACGTTTGAAACAGCAGGACCCTGAAGCTCACCGTAAATTGAGAGATGTATCTAGAGGAAGTGTGGGGAGTAAGAATTTCTCACACACCATCAAGAAGTCTTTCTCTGCTGTCCGTCGGAGTAGCTCTAGTCAGAGTGACAGTGAAAGTCGGTCTCATAGTGATGATGAAGGGTCAAGTGCAGATGATGCTATTGACAGTGATGATGAAAGGGGCAATCAGGGATTAACATTTGAAGATATAAAGGAAATTACCATTCGGAGGTCAAGACTTGCAAAGTGGCTTATGGAACCATTCTTTGAAGAATTAATCGTGGGTTGCTTTGTACGGGTTGGAATTGGGAAGACTAAGTCTGGGCGGCCCATCTACAGGCTGTGCTCGGTCCGTAATGTGGACTCTTCAGATCCTGATCGGCAGTACAAACTAGAGAATAAAACCACACACAAGTATCTGAATGTGGTTTGGGGCAATGAAAACTCCGCTGCCCGGTGGCAGATGGCTATGGTTTCAGACTCTTTGCCTTTAGAAGAGGAGTATGATCAGTGGGTCAGAGAGGTGGAGAAAAATGGTGGCCGCTTGCCAAGCAAAGAGGATGTGCTGGAAAAAAAAGGAAGCCATAAAAAAAACCAATACATTTGTCTACTCAGCCGAAACTGTGAAGCAGATGATACAGGAGAAAAAATCTGCTTCATCAAGGCCATTGAACATTGCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000428 GO:0000988 GO:0000989 GO:0000993 GO:0001076 GO:0001098 GO:0001099 GO:0001701 GO:0001704 GO:0001706 GO:0001711 GO:0001824 GO:0001832 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007369 GO:0007492 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009790 GO:0009792 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019827 GO:0019899 GO:0030154 GO:0030880 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0034243 GO:0034968 GO:0035987 GO:0036211 GO:0040007 GO:0043009 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045165 GO:0045309 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048589 GO:0048598 GO:0048646 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050815 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051219 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0055029 GO:0060255 GO:0060795 GO:0061695 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:0097159 GO:0098727 GO:0099122 GO:0140110 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905269 GO:1990234 GO:1990269 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3

Protein Analysis

491

Amino Acids

55.3

Weight (kDa)

8.63

Isoelectric Point (pI)

54.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plus-3 PF03126 332 - 438 2.4e-32 Plus-3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 444
AccI GTMKAC 1 cut(s) 1396
AciI CCGC 8 cut(s) 188, 238, 388, 536, 668, 1114, 1236, 1330
AclI AACGTT 1 cut(s) 760
AclWI GGATC 3 cut(s) 88, 373, 1154
AcoI YGGCCR 2 cut(s) 176, 1327
AcsI RAATTY 2 cut(s) 614, 832
AcuI CTGAAG 4 cut(s) 72, 384, 801, 1140
AfaI GTAC 2 cut(s) 1083, 1175
AfiI CCNNNNNNNGG 4 cut(s) 1017, 1125, 1147, 1242
AgsI TTSAA 9 cut(s) 149, 267, 382, 554, 742, 766, 992, 1058, 1460
AjiI CACGTC 1 cut(s) 278
AjnI CCWGG 2 cut(s) 426, 653
AloI GAACNNNNNNTCC 2 cut(s) 357, 389
AluBI AGCT 8 cut(s) 20, 125, 532, 562, 701, 722, 785, 882
AluI AGCT 8 cut(s) 20, 125, 532, 562, 701, 722, 785, 882
Alw21I GWGCWC 2 cut(s) 583, 1136
Alw26I GTCTC 3 cut(s) 134, 268, 915
AlwI GGATC 3 cut(s) 88, 373, 1154
AlwNI CAGNNNCTG 1 cut(s) 1163
Ama87I CYCGRG 1 cut(s) 684
AoxI GGCC 4 cut(s) 176, 1115, 1327, 1452
ApeKI GCWGC 5 cut(s) 215, 495, 719, 722, 1238
ApoI RAATTY 2 cut(s) 614, 832
ArsI GACNNNNNNTTYG 2 cut(s) 474, 506
AseI ATTAAT 1 cut(s) 1064
Asp700I GAANNNNTTC 2 cut(s) 229, 857
AspLEI GCGC 2 cut(s) 693, 1469
AspS9I GGNCC 4 cut(s) 394, 775, 1116, 1138
AsuC2I CCSGG 2 cut(s) 81, 1243
AsuHPI GGTGA 4 cut(s) 329, 449, 482, 779
AvaI CYCGRG 1 cut(s) 684
AvaII GGWCC 3 cut(s) 394, 775, 1138
AxyI CCTNAGG 1 cut(s) 361
BaeI ACNNNNGTAYC 2 cut(s) 1187, 1220
BanII GRGCYC 1 cut(s) 165
BbsI GAAGAC 2 cut(s) 78, 1106
Bbv12I GWGCWC 2 cut(s) 583, 1136
BbvCI CCTCAGC 1 cut(s) 697
BbvI GCAGC 5 cut(s) 227, 507, 709, 731, 1225
BccI CCATC 6 cut(s) 290, 326, 685, 854, 1127, 1246
BceAI ACGGC 1 cut(s) 191
BciT130I CCWGG 2 cut(s) 428, 655
BclI TGATCA 1 cut(s) 1294
BcnI CCSGG 2 cut(s) 81, 1243
BcoDI GTCTC 3 cut(s) 134, 268, 915
BfaI CTAG 6 cut(s) 17, 312, 702, 810, 885, 1181
BfmI CTRYAG 1 cut(s) 1123
BglII AGATCT 1 cut(s) 704
BisI GCNGC 8 cut(s) 216, 389, 496, 720, 723, 1115, 1239, 1330
BlsI GCNGC 8 cut(s) 217, 390, 497, 721, 724, 1116, 1240, 1331
Bme1390I CCNGG 4 cut(s) 81, 428, 655, 1243
Bme18I GGWCC 3 cut(s) 394, 775, 1138
BmeT110I CYCGRG 1 cut(s) 684
BmgBI CACGTC 1 cut(s) 278
BmgT120I GGNCC 4 cut(s) 394, 775, 1116, 1138
BmiI GGNNCC 4 cut(s) 162, 396, 777, 1047
BmrFI CCNGG 4 cut(s) 81, 428, 655, 1243
BmsI GCATC 2 cut(s) 724, 934
BpiI GAAGAC 2 cut(s) 78, 1106
Bpu10I CCTNAGC 1 cut(s) 697
BpuEI CTTGAG 1 cut(s) 354
BpuMI CCSGG 2 cut(s) 81, 1243
BsaBI GATNNNNATC 2 cut(s) 98, 1164
BsaI GGTCTC 1 cut(s) 915
BsaJI CCNNGG 1 cut(s) 80
Bsc4I CCNNNNNNNGG 4 cut(s) 1017, 1125, 1147, 1242
Bse118I RCCGGY 1 cut(s) 246
Bse21I CCTNAGG 1 cut(s) 361
Bse3DI GCAATG 2 cut(s) 1231, 1462
Bse8I GATNNNNATC 2 cut(s) 98, 1164
BseBI CCWGG 2 cut(s) 428, 655
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 3 cut(s) 202, 436, 1354
BseJI GATNNNNATC 2 cut(s) 98, 1164
BseLI CCNNNNNNNGG 4 cut(s) 1017, 1125, 1147, 1242
BseMI GCAATG 2 cut(s) 1231, 1462
BseMII CTCAG 4 cut(s) 135, 375, 711, 1414
BseRI GAGGAG 6 cut(s) 56, 107, 122, 286, 685, 1301
BseX3I CGGCCG 1 cut(s) 176
BseXI GCAGC 5 cut(s) 227, 507, 709, 731, 1225
BsgI GTGCAG 1 cut(s) 957
Bsh1285I CGRYCG 1 cut(s) 179
BshFI GGCC 4 cut(s) 178, 1117, 1329, 1454
BsiEI CGRYCG 1 cut(s) 179
BsiHKAI GWGCWC 2 cut(s) 583, 1136
BsiHKCI CYCGRG 1 cut(s) 684
BsiSI CCGG 3 cut(s) 80, 247, 1243
BslI CCNNNNNNNGG 4 cut(s) 1017, 1125, 1147, 1242
BsmAI GTCTC 3 cut(s) 134, 268, 915
BsmBI CGTCTC 2 cut(s) 134, 268
BsnI GGCC 4 cut(s) 178, 1117, 1329, 1454
Bso31I GGTCTC 1 cut(s) 915
BsoBI CYCGRG 1 cut(s) 684
Bsp1286I GDGCHC 3 cut(s) 165, 583, 1136
Bsp143I GATC 8 cut(s) 93, 365, 460, 499, 704, 1159, 1165, 1294
BspACI CCGC 8 cut(s) 188, 238, 388, 536, 668, 1114, 1236, 1330
BspANI GGCC 4 cut(s) 178, 1117, 1329, 1454
BspCNI CTCAG 4 cut(s) 134, 374, 710, 1413
BspLI GGNNCC 4 cut(s) 162, 396, 777, 1047
BspPI GGATC 3 cut(s) 88, 373, 1154
BspTNI GGTCTC 1 cut(s) 915
BsrDI GCAATG 2 cut(s) 1231, 1462
BsrFI RCCGGY 1 cut(s) 246
BssAI RCCGGY 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 8 cut(s) 93, 365, 460, 499, 704, 1159, 1165, 1294
Bst2UI CCWGG 2 cut(s) 428, 655
Bst4CI ACNGT 5 cut(s) 651, 791, 899, 956, 1412
Bst6I CTCTTC 3 cut(s) 140, 1159, 1278
BstAPI GCANNNNNTGC 1 cut(s) 944
BstC8I GCNNGC 3 cut(s) 248, 534, 1334
BstDEI CTNAG 5 cut(s) 121, 361, 697, 1104, 1400
BstF5I GGATG 3 cut(s) 202, 436, 1354
BstHHI GCGC 2 cut(s) 693, 1469
BstKTI GATC 8 cut(s) 96, 368, 463, 502, 707, 1162, 1168, 1297
BstMAI GTCTC 3 cut(s) 134, 268, 915
BstMBI GATC 8 cut(s) 93, 365, 460, 499, 704, 1159, 1165, 1294
BstMCI CGRYCG 1 cut(s) 179
BstMWI GCNNNNNNNGC 4 cut(s) 707, 716, 944, 1338
BstNI CCWGG 2 cut(s) 428, 655
BstSCI CCNGG 4 cut(s) 79, 426, 653, 1241
BstSFI CTRYAG 1 cut(s) 1123
BstV1I GCAGC 5 cut(s) 227, 507, 709, 731, 1225
BstV2I GAAGAC 2 cut(s) 78, 1106
BstX2I RGATCY 3 cut(s) 365, 704, 1159
BstYI RGATCY 3 cut(s) 365, 704, 1159
BstZI CGGCCG 1 cut(s) 176
Bsu36I CCTNAGG 1 cut(s) 361
BsuRI GGCC 4 cut(s) 178, 1117, 1329, 1454
BtgZI GCGATG 1 cut(s) 94
BtrI CACGTC 1 cut(s) 278
BtsCI GGATG 3 cut(s) 202, 436, 1354
BtsIMutI CAGTG 3 cut(s) 904, 961, 1304
Cac8I GCNNGC 3 cut(s) 248, 534, 1334
CaiI CAGNNNCTG 1 cut(s) 1163
CfoI GCGC 2 cut(s) 693, 1469
Cfr10I RCCGGY 1 cut(s) 246
Cfr13I GGNCC 4 cut(s) 394, 775, 1116, 1138
CpoI CGGWCCG 1 cut(s) 1138
Csp6I GTAC 2 cut(s) 1082, 1174
CspI CGGWCCG 1 cut(s) 1138
CviQI GTAC 2 cut(s) 1082, 1174
DdeI CTNAG 5 cut(s) 121, 361, 697, 1104, 1400
DpnI GATC 8 cut(s) 95, 367, 462, 501, 706, 1161, 1167, 1296
DpnII GATC 8 cut(s) 93, 365, 460, 499, 704, 1159, 1165, 1294
EaeI YGGCCR 2 cut(s) 176, 1327
EagI CGGCCG 1 cut(s) 176
Eam1104I CTCTTC 3 cut(s) 140, 1159, 1278
EarI CTCTTC 3 cut(s) 140, 1159, 1278
EciI GGCGGA 3 cut(s) 203, 253, 657
EclXI CGGCCG 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 165
Eco31I GGTCTC 1 cut(s) 915
Eco47I GGWCC 3 cut(s) 394, 775, 1138
Eco52I CGGCCG 1 cut(s) 176
Eco57I CTGAAG 4 cut(s) 72, 384, 801, 1140
Eco81I CCTNAGG 1 cut(s) 361
Eco88I CYCGRG 1 cut(s) 684
EcoO109I RGGNCCY 1 cut(s) 775
EcoRII CCWGG 2 cut(s) 426, 653
EcoT22I ATGCAT 1 cut(s) 739
EcoT38I GRGCYC 1 cut(s) 165
Esp3I CGTCTC 2 cut(s) 134, 268
FbaI TGATCA 1 cut(s) 1294
FblI GTMKAC 1 cut(s) 1396
Fnu4HI GCNGC 8 cut(s) 216, 389, 496, 720, 723, 1115, 1239, 1330
FokI GGATG 3 cut(s) 209, 443, 1361
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 8 cut(s) 216, 389, 496, 720, 723, 1115, 1239, 1330
FspBI CTAG 6 cut(s) 17, 312, 702, 810, 885, 1181
GlaI GCGC 2 cut(s) 692, 1468
GluI GCNGC 8 cut(s) 216, 389, 496, 720, 723, 1115, 1239, 1330
HaeIII GGCC 4 cut(s) 178, 1117, 1329, 1454
HapII CCGG 3 cut(s) 80, 247, 1243
HhaI GCGC 2 cut(s) 693, 1469
Hin6I GCGC 2 cut(s) 691, 1467
HinP1I GCGC 2 cut(s) 691, 1467
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 9 cut(s) 284, 308, 323, 482, 565, 601, 664, 1151, 1268
HpaII CCGG 3 cut(s) 80, 247, 1243
HphI GGTGA 4 cut(s) 329, 449, 482, 779
Hpy166II GTNNAC 2 cut(s) 1150, 1397
Hpy188III TCNNGA 6 cut(s) 363, 684, 810, 850, 1023, 1163
Hpy8I GTNNAC 2 cut(s) 1150, 1397
Hpy99I CGWCG 1 cut(s) 876
HpyAV CCTTC 4 cut(s) 408, 428, 634, 920
HpyCH4III ACNGT 5 cut(s) 651, 791, 899, 956, 1412
HpyCH4IV ACGT 3 cut(s) 277, 418, 760
HpyCH4V TGCA 4 cut(s) 4, 737, 938, 1031
HpyF10VI GCNNNNNNNGC 4 cut(s) 707, 716, 944, 1338
HpyF3I CTNAG 5 cut(s) 121, 361, 697, 1104, 1400
HpySE526I ACGT 3 cut(s) 277, 418, 760
HspAI GCGC 2 cut(s) 691, 1467
KroI GCCGGC 1 cut(s) 246
KroNI GCCGGC 1 cut(s) 248
Ksp22I TGATCA 1 cut(s) 1294
Kzo9I GATC 8 cut(s) 93, 365, 460, 499, 704, 1159, 1165, 1294
LmnI GCTCC 2 cut(s) 160, 698
Lsp1109I GCAGC 5 cut(s) 227, 507, 709, 731, 1225
LweI GCATC 2 cut(s) 724, 934
MaeI CTAG 6 cut(s) 17, 312, 702, 810, 885, 1181
MaeII ACGT 3 cut(s) 277, 418, 760
MaeIII GTNAC 5 cut(s) 305, 419, 661, 747, 893
MalI GATC 8 cut(s) 95, 367, 462, 501, 706, 1161, 1167, 1296
MboI GATC 8 cut(s) 93, 365, 460, 499, 704, 1159, 1165, 1294
MflI RGATCY 3 cut(s) 365, 704, 1159
MhlI GDGCHC 3 cut(s) 165, 583, 1136
MluCI AATT 7 cut(s) 153, 614, 794, 832, 1005, 1061, 1092
MlyI GAGTC 6 cut(s) 302, 317, 610, 658, 1145, 1262
MmeI TCCRAC 2 cut(s) 854, 1069
Mph1103I ATGCAT 1 cut(s) 739
MroNI GCCGGC 1 cut(s) 246
MroXI GAANNNNTTC 2 cut(s) 229, 857
MseI TTAA 2 cut(s) 983, 1064
MslI CAYNNNNRTG 1 cut(s) 918
MspA1I CMGCKG 2 cut(s) 722, 1238
MspI CCGG 3 cut(s) 80, 247, 1243
MspR9I CCNGG 4 cut(s) 81, 428, 655, 1243
MvaI CCWGG 2 cut(s) 428, 655
MwoI GCNNNNNNNGC 4 cut(s) 707, 716, 944, 1338
NaeI GCCGGC 1 cut(s) 248
NciI CCSGG 2 cut(s) 81, 1243
NdeII GATC 8 cut(s) 93, 365, 460, 499, 704, 1159, 1165, 1294
NgoMIV GCCGGC 1 cut(s) 246
NlaIV GGNNCC 4 cut(s) 162, 396, 777, 1047
NmuCI GTSAC 4 cut(s) 305, 419, 661, 893
NsiI ATGCAT 1 cut(s) 739
PaeR7I CTCGAG 1 cut(s) 684
PcsI WCGNNNNNNNCGW 1 cut(s) 757
PdiI GCCGGC 1 cut(s) 248
PdmI GAANNNNTTC 2 cut(s) 229, 857
PfeI GAWTC 3 cut(s) 284, 482, 565
PflFI GACNNNGTC 1 cut(s) 1105
PfoI TCCNGGA 1 cut(s) 653
PkrI GCNGC 8 cut(s) 217, 390, 497, 721, 724, 1116, 1240, 1331
PleI GAGTC 6 cut(s) 302, 317, 609, 658, 1145, 1262
PpsI GAGTC 6 cut(s) 302, 317, 609, 658, 1145, 1262
PpuMI RGGWCCY 1 cut(s) 775
PshBI ATTAAT 1 cut(s) 1064
PsiI TTATAA 1 cut(s) 444
Psp1406I AACGTT 1 cut(s) 760
Psp5II RGGWCCY 1 cut(s) 775
Psp6I CCWGG 2 cut(s) 426, 653
PspGI CCWGG 2 cut(s) 426, 653
PspN4I GGNNCC 4 cut(s) 162, 396, 777, 1047
PspPI GGNCC 4 cut(s) 394, 775, 1116, 1138
PspPPI RGGWCCY 1 cut(s) 775
PstNI CAGNNNCTG 1 cut(s) 1163
PsuI RGATCY 3 cut(s) 365, 704, 1159
PsyI GACNNNGTC 1 cut(s) 1105
PvuII CAGCTG 1 cut(s) 722
RsaI GTAC 2 cut(s) 1083, 1175
RsaNI GTAC 2 cut(s) 1082, 1174
RseI CAYNNNNRTG 1 cut(s) 918
Rsr2I CGGWCCG 1 cut(s) 1138
RsrII CGGWCCG 1 cut(s) 1138
SaqAI TTAA 2 cut(s) 983, 1064
SatI GCNGC 8 cut(s) 216, 389, 496, 720, 723, 1115, 1239, 1330
Sau3AI GATC 8 cut(s) 93, 365, 460, 499, 704, 1159, 1165, 1294
Sau96I GGNCC 4 cut(s) 394, 775, 1116, 1138
SchI GAGTC 6 cut(s) 302, 317, 610, 658, 1145, 1262
ScrFI CCNGG 4 cut(s) 81, 428, 655, 1243
SduI GDGCHC 3 cut(s) 165, 583, 1136
SfaNI GCATC 2 cut(s) 724, 934
SfcI CTRYAG 1 cut(s) 1123
Sfr274I CTCGAG 1 cut(s) 684
SinI GGWCC 3 cut(s) 394, 775, 1138
SlaI CTCGAG 1 cut(s) 684
SmiMI CAYNNNNRTG 1 cut(s) 918
SmlI CTYRAG 2 cut(s) 369, 684
SmoI CTYRAG 2 cut(s) 369, 684
Sse9I AATT 7 cut(s) 153, 614, 794, 832, 1005, 1061, 1092
SsiI CCGC 8 cut(s) 188, 238, 388, 536, 668, 1114, 1236, 1330
SspMI CTAG 6 cut(s) 17, 312, 702, 810, 885, 1181
StyD4I CCNGG 4 cut(s) 79, 426, 653, 1241
TaaI ACNGT 5 cut(s) 651, 791, 899, 956, 1412
TaiI ACGT 3 cut(s) 280, 421, 763
TaqI TCGA 2 cut(s) 58, 685
TaqII GACCGA 2 cut(s) 897, 1126
TasI AATT 7 cut(s) 153, 614, 794, 832, 1005, 1061, 1092
TatI WGTACW 1 cut(s) 1173
TauI GCSGC 3 cut(s) 391, 1117, 1332
TfiI GAWTC 3 cut(s) 284, 482, 565
Tru1I TTAA 2 cut(s) 983, 1064
Tru9I TTAA 2 cut(s) 983, 1064
TscAI CASTG 3 cut(s) 904, 961, 1304
TseFI GTSAC 4 cut(s) 305, 419, 661, 893
TseI GCWGC 5 cut(s) 215, 495, 719, 722, 1238
Tsp45I GTSAC 4 cut(s) 305, 419, 661, 893
TspDTI ATGAA 9 cut(s) 249, 276, 429, 447, 528, 939, 978, 1242, 1435
TspGWI ACGGA 2 cut(s) 860, 1130
TspRI CASTG 3 cut(s) 904, 961, 1304
Tth111I GACNNNGTC 1 cut(s) 1105
VpaK11BI GGWCC 3 cut(s) 394, 775, 1138
VspI ATTAAT 1 cut(s) 1064
XapI RAATTY 2 cut(s) 614, 832
XbaI TCTAGA 1 cut(s) 809
XhoI CTCGAG 1 cut(s) 684
XmiI GTMKAC 1 cut(s) 1396
XmnI GAANNNNTTC 2 cut(s) 229, 857
XspI CTAG 6 cut(s) 17, 312, 702, 810, 885, 1181
Zsp2I ATGCAT 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.