RNA polymerase-associated protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G61040 AT1G61040 AT1G61040 |
| fragaria_vesca | FvH4_3g04783 FvH4_3g04783 FvH4_3g04783 FvH4_6g03621 FvH4_6g07870 |
| malus_domestica | MD04G1191400.v1.1 MD10G1061800.v1.1 |
| prunus_persica | Prupe.3G050300_v2.0.a1 Prupe.6G309900_v2.0.a1 |
| pyrus_communis | pycom04g16890 pycom12g19070 |
| rosa_chinensis | RchiOBHm_Chr3g0457571 RchiOBHm_Chr5g0007801 |
| rosa_laevigata | RLG00000025209 RLG00000031496 |
| rosa_multiflora | Rmu_sc0005098.1_g000013 Rmu_sc0005321.1_g000003 Rmu_sc0007404.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00068600 Rroxscaffold_6G00421720 |
| rosa_rugosa | Rorug03G0021500 Rorug04G0430500 |
| rosa_samantha | Rh3AG082100 Rh3BG084400 Rh3CG084600 Rh3DG085800 Rh5AG059000 Rh5BG056000 Rh5CG065700 Rh5DG055100 |
| rosa_wichuraiana | Rw3G007050 Rw5G006080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 7 cut(s) | 105, 177, 227, 332, 374, 377, 414 |
| AcoI | YGGCCR | 2 cut(s) | 135, 384 |
| AcvI | CACGTG | 1 cut(s) | 160 |
| AluBI | AGCT | 1 cut(s) | 146 |
| AluI | AGCT | 1 cut(s) | 146 |
| Alw26I | GTCTC | 4 cut(s) | 225, 330, 354, 403 |
| AoxI | GGCC | 2 cut(s) | 135, 384 |
| ApeKI | GCWGC | 1 cut(s) | 334 |
| AsuHPI | GGTGA | 5 cut(s) | 49, 70, 121, 191, 297 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 174, 206 |
| BbrPI | CACGTG | 1 cut(s) | 160 |
| BbvI | GCAGC | 1 cut(s) | 321 |
| BccI | CCATC | 7 cut(s) | 35, 83, 101, 248, 361, 401, 410 |
| BceAI | ACGGC | 2 cut(s) | 150, 331 |
| BcoDI | GTCTC | 4 cut(s) | 225, 330, 354, 403 |
| BfaI | CTAG | 1 cut(s) | 143 |
| BisI | GCNGC | 2 cut(s) | 335, 377 |
| BlsI | GCNGC | 2 cut(s) | 336, 378 |
| BmsI | GCATC | 1 cut(s) | 164 |
| BsaAI | YACGTR | 1 cut(s) | 160 |
| BsaJI | CCNNGG | 1 cut(s) | 132 |
| Bse118I | RCCGGY | 1 cut(s) | 382 |
| Bse1I | ACTGG | 1 cut(s) | 108 |
| Bse3DI | GCAATG | 2 cut(s) | 36, 317 |
| BseDI | CCNNGG | 1 cut(s) | 132 |
| BseGI | GGATG | 2 cut(s) | 93, 179 |
| BseMI | GCAATG | 2 cut(s) | 36, 317 |
| BseNI | ACTGG | 1 cut(s) | 108 |
| BseRI | GAGGAG | 4 cut(s) | 4, 7, 10, 13 |
| BseXI | GCAGC | 1 cut(s) | 321 |
| BshFI | GGCC | 2 cut(s) | 137, 386 |
| BsiSI | CCGG | 1 cut(s) | 383 |
| BsmAI | GTCTC | 4 cut(s) | 225, 330, 354, 403 |
| BsmBI | CGTCTC | 2 cut(s) | 354, 403 |
| BsnI | GGCC | 2 cut(s) | 137, 386 |
| BspACI | CCGC | 7 cut(s) | 105, 177, 227, 332, 374, 377, 414 |
| BspANI | GGCC | 2 cut(s) | 137, 386 |
| BsrDI | GCAATG | 2 cut(s) | 36, 317 |
| BsrFI | RCCGGY | 1 cut(s) | 382 |
| BsrI | ACTGG | 1 cut(s) | 108 |
| BssAI | RCCGGY | 1 cut(s) | 382 |
| BssECI | CCNNGG | 1 cut(s) | 132 |
| Bst4CI | ACNGT | 1 cut(s) | 294 |
| BstBAI | YACGTR | 1 cut(s) | 160 |
| BstDEI | CTNAG | 1 cut(s) | 209 |
| BstDSI | CCRYGG | 1 cut(s) | 132 |
| BstF5I | GGATG | 2 cut(s) | 93, 179 |
| BstMAI | GTCTC | 4 cut(s) | 225, 330, 354, 403 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 143, 343 |
| BstV1I | GCAGC | 1 cut(s) | 321 |
| BsuRI | GGCC | 2 cut(s) | 137, 386 |
| BtgI | CCRYGG | 1 cut(s) | 132 |
| BtsCI | GGATG | 2 cut(s) | 93, 179 |
| BtsI | GCAGTG | 2 cut(s) | 42, 260 |
| BtsIMutI | CAGTG | 3 cut(s) | 42, 115, 260 |
| Cfr10I | RCCGGY | 1 cut(s) | 382 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 300, 335 |
| CviJI | RGCY | 4 cut(s) | 137, 146, 202, 386 |
| CviKI_1 | RGCY | 4 cut(s) | 137, 146, 202, 386 |
| DdeI | CTNAG | 1 cut(s) | 209 |
| EaeI | YGGCCR | 2 cut(s) | 135, 384 |
| Eco72I | CACGTG | 1 cut(s) | 160 |
| Esp3I | CGTCTC | 2 cut(s) | 354, 403 |
| FaiI | YATR | 4 cut(s) | 140, 149, 268, 426 |
| FauI | CCCGC | 1 cut(s) | 234 |
| Fnu4HI | GCNGC | 2 cut(s) | 335, 377 |
| FokI | GGATG | 2 cut(s) | 80, 186 |
| Fsp4HI | GCNGC | 2 cut(s) | 335, 377 |
| FspBI | CTAG | 1 cut(s) | 143 |
| GluI | GCNGC | 2 cut(s) | 335, 377 |
| HaeIII | GGCC | 2 cut(s) | 137, 386 |
| HapII | CCGG | 1 cut(s) | 383 |
| HinfI | GANTC | 1 cut(s) | 163 |
| HpaII | CCGG | 1 cut(s) | 383 |
| HphI | GGTGA | 5 cut(s) | 49, 70, 121, 191, 297 |
| HpyAV | CCTTC | 2 cut(s) | 176, 309 |
| HpyCH4III | ACNGT | 1 cut(s) | 294 |
| HpyCH4IV | ACGT | 2 cut(s) | 159, 250 |
| HpyCH4V | TGCA | 1 cut(s) | 151 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 143, 343 |
| HpyF3I | CTNAG | 1 cut(s) | 209 |
| HpySE526I | ACGT | 2 cut(s) | 159, 250 |
| LpnPI | CCDG | 4 cut(s) | 121, 184, 327, 396 |
| Lsp1109I | GCAGC | 1 cut(s) | 321 |
| LweI | GCATC | 1 cut(s) | 164 |
| MaeI | CTAG | 1 cut(s) | 143 |
| MaeII | ACGT | 2 cut(s) | 159, 250 |
| MboII | GAAGA | 2 cut(s) | 25, 294 |
| MfeI | CAATTG | 1 cut(s) | 341 |
| MluCI | AATT | 2 cut(s) | 341, 430 |
| MseI | TTAA | 1 cut(s) | 362 |
| MspA1I | CMGCKG | 1 cut(s) | 334 |
| MspI | CCGG | 1 cut(s) | 383 |
| MunI | CAATTG | 1 cut(s) | 341 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 143, 343 |
| PfeI | GAWTC | 1 cut(s) | 163 |
| PkrI | GCNGC | 2 cut(s) | 336, 378 |
| PmaCI | CACGTG | 1 cut(s) | 160 |
| PmlI | CACGTG | 1 cut(s) | 160 |
| Ppu21I | YACGTR | 1 cut(s) | 160 |
| PspCI | CACGTG | 1 cut(s) | 160 |
| SaqAI | TTAA | 1 cut(s) | 362 |
| SatI | GCNGC | 2 cut(s) | 335, 377 |
| SetI | ASST | 7 cut(s) | 62, 148, 162, 208, 235, 253, 443 |
| SfaNI | GCATC | 1 cut(s) | 164 |
| Sse9I | AATT | 2 cut(s) | 341, 430 |
| SsiI | CCGC | 7 cut(s) | 105, 177, 227, 332, 374, 377, 414 |
| SspMI | CTAG | 1 cut(s) | 143 |
| TaaI | ACNGT | 1 cut(s) | 294 |
| TaiI | ACGT | 2 cut(s) | 162, 253 |
| TaqI | TCGA | 1 cut(s) | 277 |
| TasI | AATT | 2 cut(s) | 341, 430 |
| TauI | GCSGC | 1 cut(s) | 379 |
| TfiI | GAWTC | 1 cut(s) | 163 |
| Tru1I | TTAA | 1 cut(s) | 362 |
| Tru9I | TTAA | 1 cut(s) | 362 |
| TscAI | CASTG | 3 cut(s) | 49, 115, 267 |
| TseI | GCWGC | 1 cut(s) | 334 |
| TspDTI | ATGAA | 3 cut(s) | 25, 43, 243 |
| TspRI | CASTG | 3 cut(s) | 49, 115, 267 |
| XspI | CTAG | 1 cut(s) | 143 |