MD04G1191400.v1.1

RNA polymerase-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0003596
Physical Location & Seq
Reverse (-)
28090204 .. 28092150
1947 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1191400.v1.1.491

Sequence Viewer

Length: 1947 bp
ATGTCAGACTTAGAATTGGAAAGTGACCTCCTTGAGGCAGCAGGAAGAACTAGTTCAGCTGGGAAAAAGCAGTACCGGCTTCCATCTTCTAGAAAGCAACATGGAGGTTCCTATTCTGATGATGGAAGTAACTCCATGGATGAAGATGATGATCATGGAAGCAAGAAGCCCTCTCAAGTACCTCTGAAGAAGAGGTTTGAACCTACTGAAAGGGGCAGTGACAAAGAACATGATTCTAGTGATGATGGTTCTGATCATGAGGGTGAAAGTAGTGATGAATCTGATATTGGCCCCGATCTTTACAAGAATGATGCTGACAGGAAACGGCTTGCAGCAATGAGTGAACTTGAAAGAGAGATGATTTTGACAAGTAGAGCAGAGAAGAAAGGCGGCAAGGATTTCATGGAAAAGTTGAGATCAAAAAGAGGCAATGCTATATCTACACAATCAAGGAAAGAGGATCCTCTTCCATTCTCTCGCGGTGTACGCTCATCAGCCAGGGCTACTGACAAGTCAGCCACTATGGATGATGCATTGAATAAATTACGAGCAAAACGTCTGAAGCAACAAGACTCAAAGGATCACCATAAGTTGAGGGACGCGTCAAAAGGAGGTGCAGGTAGCCAGGATATATCACCAAGCAAGCGTAATATGAGTTGCTCCAGTCAAATCGAGACTCTGGACAGGTTGCCTACTGAAGAGGAAGCGGATGATGAATTCTTTGACAGCGATGAGGAACGTTCAGAGGCACCCACATTTCAGGACATAAGGGATATTACCATACCAAGGTCAAAACTTGGAAAATGGGTCATGGAACCATTTTTTGAGGAGTTAATCGGGGGCTGCTTTGTTAGGGTTGGATGTGGCAGATCATCAGAAGGTTCTGTCTACAGGCTCTGCATGGTTCAGAATGTGGATGCCACAAATCCTGGCCGGGAGTATAAGCTAGAGGATAAAGTCACACATAAATATTTGAATTGTGTTTTTGGCAGCGAAAGTTCTGCTTCCAAATGGCCGATGGCTAATGTCTCAGATTCTCCTCCGCAGGAGAACGAGTTTGAACAGTGGTTTAAGGAAGTGCGGCGTACCGCTGGCCAAATGCCAAGTAAACAGGAGGTATTAGAAAAGAAGGAGGCTCTTCTGAAATCAAATTCATTTATTTACTCGGCAACTACTGTGAAGCAAATGTTGCAGGAGAAAAAGGCCTCAGCAAGGCCCGTTAACATTGCAGTTGAGAAGGAACGATTGAGGAGGCAGTTGGATGTTGCAGAAAGTAAAGGCGACGAGGAAGAAGCTAAGAGGATCAAGACAAGGCTCCAGGAATTAGAAGCATCCAGGCAAACTCAGGGGAAAGATAGCAAAGCTATTCGATTAGCTGAAATGAACAGGAAGAACAGGGTCGAGAATTTTAAAAATGCTTCAGGGTTGAAACCAGTGAATATGAATCTGAAATCAGGGGAGGCTGGTTATGATCCGTTCTCGAGAAGATGGACTCAATCGAGAAATTATTATGTTGCAAGGCCTGGAGGAGGCGATGGAGCTGCTGCTGAACGAGGCGATGAAGCTGCTGAAGCAACAGATGGAACTACTGGTAAGGGCAGCAACAAGGAAAAGGCAAATGTAGCGGGACAGCTTGGTATGCAAGCAACAGAGGCAGCATTGGAAGCAGCAGCAGGTGCAGGGAAGTTGGTTGATACAAGTGCTCCTGTGGACAAAGGGACAGAATCATATGTGCTGCACAACTTCGAGCTGCCAATCTCGTTGGCTCCACTTCAGAAGTACGGTGGACCTCAGGGTGCTGCGATCGCGTATATGGAGAGAAGACAAAGGATCGAAGCAACAGTCGGGCGTCGAGTGCTGGATGACGGGAGGGGGCATGCTTCGACCTTGTCCATTAAGGACTATATGAGACTGCAGGAGATGCACCGCCTTCGCCGTGGTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3

Protein Analysis

649

Amino Acids

71.99

Weight (kDa)

6.85

Isoelectric Point (pI)

57.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plus-3 PF03126 255 - 360 1.1e-28 Plus-3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1664
Acc36I ACCTGC 2 cut(s) 608, 1664
AccB1I GGYRCC 1 cut(s) 748
AccI GTMKAC 1 cut(s) 888
AccII CGCG 3 cut(s) 480, 602, 1808
AciI CCGC 8 cut(s) 390, 480, 707, 1043, 1081, 1089, 1625, 1927
AclI AACGTT 1 cut(s) 739
AclWI GGATC 6 cut(s) 455, 468, 588, 1310, 1466, 1838
AcoI YGGCCR 3 cut(s) 931, 1013, 1093
AcsI RAATTY 3 cut(s) 716, 1150, 1405
AcuI CTGAAG 6 cut(s) 206, 581, 717, 1404, 1590, 1757
AcyI GRCGYC 1 cut(s) 1849
AfaI GTAC 5 cut(s) 74, 180, 486, 1087, 1781
AfiI CCNNNNNNNGG 4 cut(s) 34, 786, 1212, 1529
AflIII ACRYGT 1 cut(s) 600
AgsI TTSAA 6 cut(s) 200, 350, 538, 976, 1061, 1429
AhlI ACTAGT 1 cut(s) 50
AjnI CCWGG 6 cut(s) 497, 624, 928, 1317, 1334, 1522
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AluBI AGCT 9 cut(s) 59, 946, 1295, 1364, 1376, 1541, 1565, 1633, 1750
AluI AGCT 9 cut(s) 59, 946, 1295, 1364, 1376, 1541, 1565, 1633, 1750
Alw21I GWGCWC 1 cut(s) 1705
Alw26I GTCTC 3 cut(s) 668, 1033, 1903
AlwI GGATC 6 cut(s) 455, 468, 588, 1310, 1466, 1838
AlwNI CAGNNNCTG 1 cut(s) 897
Ama87I CYCGRG 1 cut(s) 1480
AoxI GGCC 7 cut(s) 289, 931, 1013, 1093, 1203, 1214, 1520
ApoI RAATTY 3 cut(s) 716, 1150, 1405
ArsI GACNNNNNNTTYG 2 cut(s) 1827, 1859
AsiSI GCGATCGC 1 cut(s) 1806
Asp700I GAANNNNTTC 1 cut(s) 52
AspS9I GGNCC 3 cut(s) 290, 1215, 1787
AsuC2I CCSGG 1 cut(s) 935
AsuHPI GGTGA 3 cut(s) 275, 575, 627
AvaI CYCGRG 1 cut(s) 1480
AvaII GGWCC 1 cut(s) 1787
AxyI CCTNAGG 1 cut(s) 1791
BalI TGGCCA 1 cut(s) 1095
BamHI GGATCC 1 cut(s) 460
BanI GGYRCC 1 cut(s) 748
BbsI GAAGAC 1 cut(s) 1828
Bbv12I GWGCWC 1 cut(s) 1705
BbvCI CCTCAGC 1 cut(s) 1207
BccI CCATC 7 cut(s) 91, 116, 239, 1012, 1482, 1529, 1574
BceAI ACGGC 2 cut(s) 341, 1920
BcgI CGANNNNNNTGC 8 cut(s) 983, 1017, 1523, 1547, 1557, 1581, 1913, 1947
BciT130I CCWGG 6 cut(s) 499, 626, 930, 1319, 1336, 1524
BclI TGATCA 2 cut(s) 151, 253
BcnI CCSGG 1 cut(s) 935
BcoDI GTCTC 3 cut(s) 668, 1033, 1903
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 4 cut(s) 51, 90, 237, 947
BfmI CTRYAG 2 cut(s) 889, 1913
BfuAI ACCTGC 2 cut(s) 608, 1664
Bme1390I CCNGG 7 cut(s) 499, 626, 930, 935, 1319, 1336, 1524
Bme18I GGWCC 1 cut(s) 1787
BmeT110I CYCGRG 1 cut(s) 1480
BmgT120I GGNCC 3 cut(s) 290, 1215, 1787
BmiI GGNNCC 7 cut(s) 109, 292, 462, 750, 816, 1316, 1767
BmrFI CCNGG 7 cut(s) 499, 626, 930, 935, 1319, 1336, 1524
BmsI GCATC 5 cut(s) 301, 520, 907, 1340, 1911
BpiI GAAGAC 1 cut(s) 1828
BpmI CTGGAG 3 cut(s) 646, 1301, 1545
Bpu10I CCTNAGC 1 cut(s) 1207
BpuEI CTTGAG 2 cut(s) 53, 159
BpuMI CCSGG 1 cut(s) 935
BsaBI GATNNNNATC 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 1849
BsaJI CCNNGG 4 cut(s) 135, 498, 785, 1936
BsaXI ACNNNNNCTCC 4 cut(s) 1040, 1070, 1687, 1717
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 786, 1212, 1529
Bse118I RCCGGY 1 cut(s) 75
Bse1I ACTGG 3 cut(s) 663, 1433, 1594
Bse21I CCTNAGG 1 cut(s) 1791
Bse3DI GCAATG 3 cut(s) 342, 436, 1224
Bse8I GATNNNNATC 1 cut(s) 150
BseBI CCWGG 6 cut(s) 499, 626, 930, 1319, 1336, 1524
BseDI CCNNGG 4 cut(s) 135, 498, 785, 1936
BseGI GGATG 8 cut(s) 145, 532, 715, 866, 922, 1267, 1331, 1867
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 4 cut(s) 34, 786, 1212, 1529
BseMI GCAATG 3 cut(s) 342, 436, 1224
BseMII CTCAG 4 cut(s) 1044, 1221, 1358, 1805
BseNI ACTGG 3 cut(s) 663, 1433, 1594
BseRI GAGGAG 4 cut(s) 842, 1029, 1264, 1542
BseYI CCCAGC 1 cut(s) 59
BsgI GTGCAG 3 cut(s) 636, 1698, 1721
Bsh1236I CGCG 3 cut(s) 480, 602, 1808
Bsh1285I CGRYCG 1 cut(s) 1806
BshFI GGCC 7 cut(s) 291, 933, 1015, 1095, 1205, 1216, 1522
BshNI GGYRCC 1 cut(s) 748
BsiEI CGRYCG 1 cut(s) 1806
BsiHKAI GWGCWC 1 cut(s) 1705
BsiHKCI CYCGRG 1 cut(s) 1480
BsiSI CCGG 2 cut(s) 76, 934
BslFI GGGAC 3 cut(s) 611, 1641, 1732
BslI CCNNNNNNNGG 4 cut(s) 34, 786, 1212, 1529
BsmAI GTCTC 3 cut(s) 668, 1033, 1903
BsmFI GGGAC 3 cut(s) 611, 1641, 1732
BsnI GGCC 7 cut(s) 291, 933, 1015, 1095, 1205, 1216, 1522
BsoBI CYCGRG 1 cut(s) 1480
Bsp1286I GDGCHC 1 cut(s) 1705
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 8 cut(s) 390, 480, 707, 1043, 1081, 1089, 1625, 1927
BspANI GGCC 7 cut(s) 291, 933, 1015, 1095, 1205, 1216, 1522
BspCNI CTCAG 4 cut(s) 1043, 1220, 1357, 1804
BspFNI CGCG 3 cut(s) 480, 602, 1808
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 7 cut(s) 109, 292, 462, 750, 816, 1316, 1767
BspMAI CTGCAG 1 cut(s) 1917
BspMI ACCTGC 2 cut(s) 608, 1664
BspPI GGATC 6 cut(s) 455, 468, 588, 1310, 1466, 1838
BspQI GCTCTTC 1 cut(s) 1143
BspT107I GGYRCC 1 cut(s) 748
BsrDI GCAATG 3 cut(s) 342, 436, 1224
BsrFI RCCGGY 1 cut(s) 75
BsrI ACTGG 3 cut(s) 663, 1433, 1594
BssAI RCCGGY 1 cut(s) 75
BssECI CCNNGG 4 cut(s) 135, 498, 785, 1936
BssNI GRCGYC 1 cut(s) 1849
BssT1I CCWWGG 2 cut(s) 135, 785
Bst2UI CCWGG 6 cut(s) 499, 626, 930, 1319, 1336, 1524
Bst4CI ACNGT 4 cut(s) 1065, 1177, 1784, 1843
Bst6I CTCTTC 4 cut(s) 185, 471, 693, 1143
BstACI GRCGYC 1 cut(s) 1849
BstAPI GCANNNNNTGC 3 cut(s) 1189, 1676, 1921
BstC8I GCNNGC 5 cut(s) 330, 644, 1093, 1644, 1878
BstDEI CTNAG 6 cut(s) 10, 1030, 1207, 1296, 1344, 1791
BstDSI CCRYGG 2 cut(s) 135, 1936
BstENI CCTNNNNNAGG 3 cut(s) 32, 1210, 1527
BstF5I GGATG 8 cut(s) 145, 532, 715, 866, 922, 1267, 1331, 1867
BstFNI CGCG 3 cut(s) 480, 602, 1808
BstMAI GTCTC 3 cut(s) 668, 1033, 1903
BstMCI CGRYCG 1 cut(s) 1806
BstNI CCWGG 6 cut(s) 499, 626, 930, 1319, 1336, 1524
BstNSI RCATGY 1 cut(s) 1880
BstSCI CCNGG 7 cut(s) 497, 624, 928, 933, 1317, 1334, 1522
BstSFI CTRYAG 2 cut(s) 889, 1913
BstUI CGCG 3 cut(s) 480, 602, 1808
BstV2I GAAGAC 1 cut(s) 1828
BstX2I RGATCY 1 cut(s) 460
BstYI RGATCY 1 cut(s) 460
Bsu36I CCTNAGG 1 cut(s) 1791
BsuRI GGCC 7 cut(s) 291, 933, 1015, 1095, 1205, 1216, 1522
BtgI CCRYGG 2 cut(s) 135, 1936
BtgZI GCGATG 3 cut(s) 744, 1548, 1572
BtsCI GGATG 8 cut(s) 145, 532, 715, 866, 922, 1267, 1331, 1867
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 3 cut(s) 223, 1070, 1440
BveI ACCTGC 2 cut(s) 608, 1664
Cac8I GCNNGC 5 cut(s) 330, 644, 1093, 1644, 1878
CaiI CAGNNNCTG 1 cut(s) 897
CciI TCATGA 1 cut(s) 256
Cfr10I RCCGGY 1 cut(s) 75
Cfr13I GGNCC 3 cut(s) 290, 1215, 1787
CseI GACGC 3 cut(s) 591, 608, 1838
Csp6I GTAC 5 cut(s) 73, 179, 485, 1086, 1780
CviAII CATG 9 cut(s) 101, 136, 155, 230, 257, 403, 811, 901, 1877
CviQI GTAC 5 cut(s) 73, 179, 485, 1086, 1780
DdeI CTNAG 6 cut(s) 10, 1030, 1207, 1296, 1344, 1791
DraI TTTAAA 1 cut(s) 1411
EaeI YGGCCR 3 cut(s) 931, 1013, 1093
Eam1104I CTCTTC 4 cut(s) 185, 471, 693, 1143
EarI CTCTTC 4 cut(s) 185, 471, 693, 1143
Eco130I CCWWGG 2 cut(s) 135, 785
Eco147I AGGCCT 2 cut(s) 1205, 1522
Eco47I GGWCC 1 cut(s) 1787
Eco57I CTGAAG 6 cut(s) 206, 581, 717, 1404, 1590, 1757
Eco81I CCTNAGG 1 cut(s) 1791
Eco88I CYCGRG 1 cut(s) 1480
EcoNI CCTNNNNNAGG 3 cut(s) 32, 1210, 1527
EcoRI GAATTC 1 cut(s) 716
EcoRII CCWGG 6 cut(s) 497, 624, 928, 1317, 1334, 1522
EcoT14I CCWWGG 2 cut(s) 135, 785
EcoT22I ATGCAT 1 cut(s) 535
ErhI CCWWGG 2 cut(s) 135, 785
FaeI CATG 9 cut(s) 104, 139, 158, 233, 260, 406, 814, 904, 1880
FalI AAGNNNNNCTT 2 cut(s) 988, 1020
FaqI GGGAC 3 cut(s) 611, 1641, 1732
FatI CATG 9 cut(s) 100, 135, 154, 229, 256, 402, 810, 900, 1876
FauI CCCGC 1 cut(s) 1618
FauNDI CATATG 1 cut(s) 1729
FbaI TGATCA 2 cut(s) 151, 253
FblI GTMKAC 1 cut(s) 888
FokI GGATG 8 cut(s) 152, 539, 722, 873, 929, 1274, 1318, 1874
FspBI CTAG 4 cut(s) 51, 90, 237, 947
GsaI CCCAGC 1 cut(s) 63
GsuI CTGGAG 3 cut(s) 646, 1301, 1545
HaeIII GGCC 7 cut(s) 291, 933, 1015, 1095, 1205, 1216, 1522
HapII CCGG 2 cut(s) 76, 934
HgaI GACGC 3 cut(s) 591, 608, 1838
Hin1I GRCGYC 1 cut(s) 1849
Hin1II CATG 9 cut(s) 104, 139, 158, 233, 260, 406, 814, 904, 1880
HincII GTYRAC 1 cut(s) 1222
HindII GTYRAC 1 cut(s) 1222
HinfI GANTC 8 cut(s) 233, 278, 572, 676, 1034, 1444, 1492, 1724
HpaI GTTAAC 1 cut(s) 1222
HpaII CCGG 2 cut(s) 76, 934
HphI GGTGA 3 cut(s) 275, 575, 627
Hpy166II GTNNAC 7 cut(s) 344, 485, 889, 1109, 1222, 1711, 1787
Hpy8I GTNNAC 7 cut(s) 344, 485, 889, 1109, 1222, 1711, 1787
Hpy99I CGWCG 2 cut(s) 1286, 1854
HpyAV CCTTC 4 cut(s) 872, 1123, 1231, 1940
HpyCH4III ACNGT 4 cut(s) 1065, 1177, 1784, 1843
HpyCH4IV ACGT 2 cut(s) 556, 739
HpyF3I CTNAG 6 cut(s) 10, 1030, 1207, 1296, 1344, 1791
HpySE526I ACGT 2 cut(s) 556, 739
Hsp92I GRCGYC 1 cut(s) 1849
Hsp92II CATG 9 cut(s) 104, 139, 158, 233, 260, 406, 814, 904, 1880
Ksp22I TGATCA 2 cut(s) 151, 253
KspAI GTTAAC 1 cut(s) 1222
LguI GCTCTTC 1 cut(s) 1143
LmnI GCTCC 5 cut(s) 665, 1320, 1538, 1708, 1771
LweI GCATC 5 cut(s) 301, 520, 907, 1340, 1911
MaeI CTAG 4 cut(s) 51, 90, 237, 947
MaeII ACGT 2 cut(s) 556, 739
MaeIII GTNAC 4 cut(s) 23, 128, 218, 958
MflI RGATCY 1 cut(s) 460
MhlI GDGCHC 1 cut(s) 1705
MlsI TGGCCA 1 cut(s) 1095
MluCI AATT 8 cut(s) 14, 542, 716, 976, 1150, 1322, 1405, 1504
MluI ACGCGT 1 cut(s) 600
MluNI TGGCCA 1 cut(s) 1095
MlyI GAGTC 3 cut(s) 566, 670, 1486
MmeI TCCRAC 2 cut(s) 838, 1239
Mox20I TGGCCA 1 cut(s) 1095
Mph1103I ATGCAT 1 cut(s) 535
MroXI GAANNNNTTC 1 cut(s) 52
MscI TGGCCA 1 cut(s) 1095
MseI TTAA 5 cut(s) 833, 1071, 1221, 1410, 1896
MslI CAYNNNNRTG 1 cut(s) 261
Msp20I TGGCCA 1 cut(s) 1095
MspA1I CMGCKG 2 cut(s) 59, 1091
MspI CCGG 2 cut(s) 76, 934
MspR9I CCNGG 7 cut(s) 499, 626, 930, 935, 1319, 1336, 1524
MvaI CCWGG 6 cut(s) 499, 626, 930, 1319, 1336, 1524
MvnI CGCG 3 cut(s) 480, 602, 1808
NciI CCSGG 1 cut(s) 935
NcoI CCATGG 1 cut(s) 135
NdeI CATATG 1 cut(s) 1729
NlaIII CATG 9 cut(s) 104, 139, 158, 233, 260, 406, 814, 904, 1880
NlaIV GGNNCC 7 cut(s) 109, 292, 462, 750, 816, 1316, 1767
NmeAIII GCCGAG 1 cut(s) 1145
NmuCI GTSAC 3 cut(s) 23, 218, 958
NsiI ATGCAT 1 cut(s) 535
NspI RCATGY 1 cut(s) 1880
PaeI GCATGC 1 cut(s) 1880
PaeR7I CTCGAG 1 cut(s) 1480
PagI TCATGA 1 cut(s) 256
PaqCI CACCTGC 1 cut(s) 1664
PceI AGGCCT 2 cut(s) 1205, 1522
PciSI GCTCTTC 1 cut(s) 1143
PcsI WCGNNNNNNNCGW 1 cut(s) 553
PdmI GAANNNNTTC 1 cut(s) 52
PfeI GAWTC 5 cut(s) 233, 278, 1034, 1444, 1724
PflFI GACNNNGTC 1 cut(s) 1888
PfoI TCCNGGA 1 cut(s) 1317
Ple19I CGATCG 1 cut(s) 1806
PleI GAGTC 3 cut(s) 566, 670, 1486
PpsI GAGTC 3 cut(s) 566, 670, 1486
Psp1406I AACGTT 1 cut(s) 739
Psp6I CCWGG 6 cut(s) 497, 624, 928, 1317, 1334, 1522
PspFI CCCAGC 1 cut(s) 59
PspGI CCWGG 6 cut(s) 497, 624, 928, 1317, 1334, 1522
PspN4I GGNNCC 7 cut(s) 109, 292, 462, 750, 816, 1316, 1767
PspPI GGNCC 3 cut(s) 290, 1215, 1787
PstI CTGCAG 1 cut(s) 1917
PstNI CAGNNNCTG 1 cut(s) 897
PsuI RGATCY 1 cut(s) 460
PsyI GACNNNGTC 1 cut(s) 1888
PvuI CGATCG 1 cut(s) 1806
PvuII CAGCTG 1 cut(s) 59
RgaI GCGATCGC 1 cut(s) 1806
RsaI GTAC 5 cut(s) 74, 180, 486, 1087, 1781
RsaNI GTAC 5 cut(s) 73, 179, 485, 1086, 1780
RseI CAYNNNNRTG 1 cut(s) 261
SapI GCTCTTC 1 cut(s) 1143
SaqAI TTAA 5 cut(s) 833, 1071, 1221, 1410, 1896
Sau96I GGNCC 3 cut(s) 290, 1215, 1787
SchI GAGTC 3 cut(s) 566, 670, 1486
ScrFI CCNGG 7 cut(s) 499, 626, 930, 935, 1319, 1336, 1524
SduI GDGCHC 1 cut(s) 1705
SfaAI GCGATCGC 1 cut(s) 1806
SfaNI GCATC 5 cut(s) 301, 520, 907, 1340, 1911
SfcI CTRYAG 2 cut(s) 889, 1913
Sfr274I CTCGAG 1 cut(s) 1480
SgfI GCGATCGC 1 cut(s) 1806
SinI GGWCC 1 cut(s) 1787
SlaI CTCGAG 1 cut(s) 1480
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 3 cut(s) 32, 174, 1480
SmoI CTYRAG 3 cut(s) 32, 174, 1480
SpeI ACTAGT 1 cut(s) 50
SphI GCATGC 1 cut(s) 1880
Sse9I AATT 8 cut(s) 14, 542, 716, 976, 1150, 1322, 1405, 1504
SseBI AGGCCT 2 cut(s) 1205, 1522
SsiI CCGC 8 cut(s) 390, 480, 707, 1043, 1081, 1089, 1625, 1927
SspI AATATT 1 cut(s) 971
SspMI CTAG 4 cut(s) 51, 90, 237, 947
StuI AGGCCT 2 cut(s) 1205, 1522
StyD4I CCNGG 7 cut(s) 497, 624, 928, 933, 1317, 1334, 1522
StyI CCWWGG 2 cut(s) 135, 785
TaaI ACNGT 4 cut(s) 1065, 1177, 1784, 1843
TaiI ACGT 2 cut(s) 559, 742
TaqI TCGA 9 cut(s) 672, 1369, 1401, 1481, 1499, 1746, 1833, 1852, 1883
TasI AATT 8 cut(s) 14, 542, 716, 976, 1150, 1322, 1405, 1504
TauI GCSGC 2 cut(s) 393, 1084
TfiI GAWTC 5 cut(s) 233, 278, 1034, 1444, 1724
Tru1I TTAA 5 cut(s) 833, 1071, 1221, 1410, 1896
Tru9I TTAA 5 cut(s) 833, 1071, 1221, 1410, 1896
TscAI CASTG 3 cut(s) 223, 1070, 1440
TseFI GTSAC 3 cut(s) 23, 218, 958
Tsp45I GTSAC 3 cut(s) 23, 218, 958
TspDTI ATGAA 8 cut(s) 156, 291, 391, 729, 1143, 1397, 1457, 1575
TspGWI ACGGA 1 cut(s) 1464
TspRI CASTG 3 cut(s) 223, 1070, 1440
Tth111I GACNNNGTC 1 cut(s) 1888
VpaK11BI GGWCC 1 cut(s) 1787
XagI CCTNNNNNAGG 3 cut(s) 32, 1210, 1527
XapI RAATTY 3 cut(s) 716, 1150, 1405
XbaI TCTAGA 1 cut(s) 89
XceI RCATGY 1 cut(s) 1880
XcmI CCANNNNNNNNNTGG 1 cut(s) 1015
XhoI CTCGAG 1 cut(s) 1480
XmiI GTMKAC 1 cut(s) 888
XmnI GAANNNNTTC 1 cut(s) 52
XspI CTAG 4 cut(s) 51, 90, 237, 947
Zsp2I ATGCAT 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.