pycom04g16890

RNA polymerase-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0003596
Physical Location & Seq
Reverse (-)
19459531 .. 19461258
1728 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g16890.1

Sequence Viewer

Length: 1728 bp
ATGATTCTAGCGATGATGGTTCTGATCGATGAGGGTGAAAGTAGTGATGAATCTGATATTGGCCCCGATCTATACAAGAATGATACTGACCGGAAACGGCTTGCATTAATGAGTGAACTTGAAAGAGAGATGATTTTGACAAGTCGAGCAGAGAAGAAAGGCGGCAAGGATTTCATGGAAAAGTTGAGATCAAAAAGAGGCGATGCAAAATCCACGCAATCAAGGAAAGAGGATCCTCTTCCATTCTCTCGCGGTGCACGCTCATCAGCCAGGGCTGCTGACAAGTCAGCCGCTATGGATGATGCATTGAATAAATTGCGAGCAAAACGTCTGAAGCAACAAGACTCAAAGGACTACCATAAGTTGAGGGACGCGTCAAAAGGAGGTGCAGGTAGCCAGAATACATCACCAAGCAAACGGAATATGAGTCACTCCAGTCAAATTGAGACTCTGGAGAGGTTGCCTACCGAAGAGGAAGCATTAAATGCAGATGATGAATTCTTTGACAGCGATAAGGAACATTCAGAGGCACCGACATTTCAGGACATAAAGGATATTACCATACCAAGGTCAAAACTTGGAAAATGGGTCATGGAACCATTTTTTGAGGAGTTAATCGAGGGCTGCTTTGTTAGGGTTGGATGTGGCAGATCACCAGAAGGTCCTGTCTACAGGCTCTGCATGGTTCAGAATGTGGATGCCACAAATCCTGGCCGGGAGTACAAGCTAGAGGATAAAGTCACACATAAATATTTGAATTGTATTTTTGGCAGCGAAAGTTCTGCTTCCAAATGGCCGATGGCTAATGTCTCAGATTCTCCTCCGCAGGAGAATGAGTTTGAACAGTGGTTTAAGGAAGTGCAGCATACCGCTGGCCAAATGCCAAGTAAACAGGAAGTATTAAAAAAGAAGGAGGCCCTTCAGAAATCAAATACATTTGTTTACTCGGCAACTACTGTGAAGCAAATGTTGCAGGAGAAAAAGGCCTCAGCAAGGCCCGTTAACATTGCAGTTGAGAAGGAACGATTGAGGAGGCAGTTGGATGTTGCAGAAAGTAAAGGCGATGAGGAAGAAGCTAAGAGGATCGAGACAAGGCTCCAGGAATTAGAAGCATCCAGGCAAACTCAGGGGAAAGATAGCAAAGCTATTCGATTAGCTGAAATGAACAGGAAGAACAGGTTCGAGAATTTTAAAAATGCTTCAGGGTTGAAACCGGTGAATATGAAACTGAAAGCAGGGGAGGCTGGCTATGATCCATTCTCGAGAAGATGGACTCAATCGAGAAATTATTATGTTGCAAGGCCTGGAGGAGGTGATGGAGCTGCTGCTGAACGAGGTGATGAAGCTGCTGAGGCAACAGATGGAACAACCGGTGTGGGCAGCAACAGGGAAAAGGCAAATGTAGCAGGGCAGCTTGGTATGCAAGCAACAGAGGCAGCATTGGAAGCAGCAGCTGGTGCAGGGAAGTTGGTTGATACAAGTGCTCCTGTGGACAAAGGGACAGAAACAAATATGCTGCACAACTTTGAGCTGCCATTTTCGTTGGCTCCACTGCAGAAGTACGGTGGACCTCAGGGCGCTGGGATTGCCTACATGGAGAGGAAACAAAGGATCGAAGCAACAGTCGGGCGTCGAGTGCTGGATGAAGGGAGGAGGCATGCTTCGACCTTGTCCATTAAGGACTATATGAGACTGCAGGAGATGCACCGCCTTCGCTCTGATCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3

Protein Analysis

576

Amino Acids

64.24

Weight (kDa)

8.35

Isoelectric Point (pI)

57.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plus-3 PF03126 182 - 287 2.1e-29 Plus-3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 380
AccB1I GGYRCC 1 cut(s) 529
AccI GTMKAC 1 cut(s) 669
AccII CGCG 2 cut(s) 252, 374
AciI CCGC 6 cut(s) 162, 252, 291, 824, 870, 1708
AclWI GGATC 6 cut(s) 227, 240, 1091, 1247, 1619, 1715
AcoI YGGCCR 3 cut(s) 712, 794, 874
AcsI RAATTY 2 cut(s) 497, 1186
AcuI CTGAAG 3 cut(s) 353, 905, 1185
AcyI GRCGYC 1 cut(s) 1630
AfaI GTAC 2 cut(s) 722, 1562
AfiI CCNNNNNNNGG 3 cut(s) 567, 993, 1310
AflIII ACRYGT 1 cut(s) 372
AgeI ACCGGT 2 cut(s) 1213, 1370
AgsI TTSAA 5 cut(s) 122, 310, 757, 842, 1210
AjnI CCWGG 5 cut(s) 269, 709, 1098, 1115, 1303
AjuI GAANNNNNNNTTGG 2 cut(s) 42, 74
AluBI AGCT 9 cut(s) 727, 1076, 1145, 1157, 1322, 1346, 1414, 1454, 1531
AluI AGCT 9 cut(s) 727, 1076, 1145, 1157, 1322, 1346, 1414, 1454, 1531
Alw21I GWGCWC 2 cut(s) 259, 1486
Alw26I GTCTC 4 cut(s) 440, 814, 1082, 1684
Alw44I GTGCAC 1 cut(s) 255
AlwI GGATC 6 cut(s) 227, 240, 1091, 1247, 1619, 1715
AlwNI CAGNNNCTG 2 cut(s) 678, 1454
Ama87I CYCGRG 1 cut(s) 1261
AoxI GGCC 8 cut(s) 61, 712, 794, 874, 915, 984, 995, 1301
ApaLI GTGCAC 1 cut(s) 255
ApoI RAATTY 2 cut(s) 497, 1186
ArsI GACNNNNNNTTYG 2 cut(s) 1608, 1640
AseI ATTAAT 1 cut(s) 107
AsiGI ACCGGT 2 cut(s) 1213, 1370
Asp700I GAANNNNTTC 1 cut(s) 1178
AspLEI GCGC 1 cut(s) 1580
AspS9I GGNCC 5 cut(s) 62, 662, 916, 996, 1568
AsuC2I CCSGG 1 cut(s) 716
AsuHPI GGTGA 6 cut(s) 47, 399, 645, 1228, 1325, 1349
AvaI CYCGRG 1 cut(s) 1261
AvaII GGWCC 2 cut(s) 662, 1568
AxyI CCTNAGG 1 cut(s) 1572
BaeGI GKGCMC 1 cut(s) 259
BalI TGGCCA 1 cut(s) 876
BamHI GGATCC 1 cut(s) 232
BanI GGYRCC 1 cut(s) 529
Bbv12I GWGCWC 2 cut(s) 259, 1486
BbvCI CCTCAGC 2 cut(s) 988, 1350
BccI CCATC 5 cut(s) 10, 793, 1263, 1310, 1355
BceAI ACGGC 1 cut(s) 113
BcgI CGANNNNNNTGC 4 cut(s) 764, 798, 1694, 1728
BciT130I CCWGG 5 cut(s) 271, 711, 1100, 1117, 1305
BcnI CCSGG 1 cut(s) 716
BcoDI GTCTC 4 cut(s) 440, 814, 1082, 1684
BfaI CTAG 2 cut(s) 8, 728
BfmI CTRYAG 3 cut(s) 670, 1553, 1694
BfoI RGCGCY 1 cut(s) 1581
BfuAI ACCTGC 1 cut(s) 380
Bme1390I CCNGG 6 cut(s) 271, 711, 716, 1100, 1117, 1305
Bme18I GGWCC 2 cut(s) 662, 1568
BmeT110I CYCGRG 1 cut(s) 1261
BmgT120I GGNCC 5 cut(s) 62, 662, 916, 996, 1568
BmiI GGNNCC 6 cut(s) 64, 234, 531, 597, 1097, 1548
BmrFI CCNGG 6 cut(s) 271, 711, 716, 1100, 1117, 1305
BmsI GCATC 5 cut(s) 193, 292, 688, 1121, 1692
BpmI CTGGAG 4 cut(s) 418, 473, 1082, 1326
Bpu10I CCTNAGC 2 cut(s) 988, 1350
BpuMI CCSGG 1 cut(s) 716
Bsa29I ATCGAT 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 1630
BsaJI CCNNGG 2 cut(s) 270, 566
BsaWI WCCGGW 3 cut(s) 90, 1213, 1370
BsaXI ACNNNNNCTCC 4 cut(s) 821, 851, 1468, 1498
Bsc4I CCNNNNNNNGG 3 cut(s) 567, 993, 1310
Bse118I RCCGGY 2 cut(s) 1213, 1370
Bse1I ACTGG 1 cut(s) 435
Bse21I CCTNAGG 1 cut(s) 1572
Bse3DI GCAATG 1 cut(s) 1005
BseBI CCWGG 5 cut(s) 271, 711, 1100, 1117, 1305
BseCI ATCGAT 1 cut(s) 27
BseDI CCNNGG 2 cut(s) 270, 566
BseGI GGATG 6 cut(s) 304, 647, 703, 1048, 1112, 1648
BseLI CCNNNNNNNGG 3 cut(s) 567, 993, 1310
BseMI GCAATG 1 cut(s) 1005
BseMII CTCAG 5 cut(s) 825, 1002, 1139, 1341, 1586
BseNI ACTGG 1 cut(s) 435
BseRI GAGGAG 5 cut(s) 623, 810, 1045, 1323, 1666
BseSI GKGCMC 1 cut(s) 259
BseYI CCCAGC 1 cut(s) 1580
BsgI GTGCAG 4 cut(s) 408, 881, 1479, 1502
Bsh1236I CGCG 2 cut(s) 252, 374
BshFI GGCC 8 cut(s) 63, 714, 796, 876, 917, 986, 997, 1303
BshNI GGYRCC 1 cut(s) 529
BshTI ACCGGT 2 cut(s) 1213, 1370
BshVI ATCGAT 1 cut(s) 27
BsiHKAI GWGCWC 2 cut(s) 259, 1486
BsiHKCI CYCGRG 1 cut(s) 1261
BsiSI CCGG 4 cut(s) 91, 715, 1214, 1371
BslFI GGGAC 2 cut(s) 383, 1513
BslI CCNNNNNNNGG 3 cut(s) 567, 993, 1310
BsmAI GTCTC 4 cut(s) 440, 814, 1082, 1684
BsmFI GGGAC 2 cut(s) 383, 1513
BsnI GGCC 8 cut(s) 63, 714, 796, 876, 917, 986, 997, 1303
BsoBI CYCGRG 1 cut(s) 1261
Bsp1286I GDGCHC 2 cut(s) 259, 1486
Bsp143I GATC 9 cut(s) 24, 67, 188, 232, 650, 1083, 1252, 1611, 1720
BspACI CCGC 6 cut(s) 162, 252, 291, 824, 870, 1708
BspANI GGCC 8 cut(s) 63, 714, 796, 876, 917, 986, 997, 1303
BspCNI CTCAG 5 cut(s) 824, 1001, 1138, 1342, 1585
BspDI ATCGAT 1 cut(s) 27
BspFNI CGCG 2 cut(s) 252, 374
BspLI GGNNCC 6 cut(s) 64, 234, 531, 597, 1097, 1548
BspMAI CTGCAG 2 cut(s) 1557, 1698
BspMI ACCTGC 1 cut(s) 380
BspPI GGATC 6 cut(s) 227, 240, 1091, 1247, 1619, 1715
BspT107I GGYRCC 1 cut(s) 529
BsrDI GCAATG 1 cut(s) 1005
BsrFI RCCGGY 2 cut(s) 1213, 1370
BsrI ACTGG 1 cut(s) 435
BssAI RCCGGY 2 cut(s) 1213, 1370
BssECI CCNNGG 2 cut(s) 270, 566
BssMI GATC 9 cut(s) 24, 67, 188, 232, 650, 1083, 1252, 1611, 1720
BssNI GRCGYC 1 cut(s) 1630
BssT1I CCWWGG 1 cut(s) 566
Bst2UI CCWGG 5 cut(s) 271, 711, 1100, 1117, 1305
Bst4CI ACNGT 4 cut(s) 846, 958, 1565, 1624
Bst6I CTCTTC 2 cut(s) 243, 465
BstACI GRCGYC 1 cut(s) 1630
BstAPI GCANNNNNTGC 4 cut(s) 485, 970, 1457, 1702
BstC8I GCNNGC 7 cut(s) 102, 259, 321, 874, 1246, 1425, 1659
BstDEI CTNAG 6 cut(s) 811, 988, 1077, 1125, 1350, 1572
BstENI CCTNNNNNAGG 2 cut(s) 991, 1308
BstF5I GGATG 6 cut(s) 304, 647, 703, 1048, 1112, 1648
BstFNI CGCG 2 cut(s) 252, 374
BstH2I RGCGCY 1 cut(s) 1581
BstHHI GCGC 1 cut(s) 1580
BstKTI GATC 9 cut(s) 27, 70, 191, 235, 653, 1086, 1255, 1614, 1723
BstMAI GTCTC 4 cut(s) 440, 814, 1082, 1684
BstMBI GATC 9 cut(s) 24, 67, 188, 232, 650, 1083, 1252, 1611, 1720
BstNI CCWGG 5 cut(s) 271, 711, 1100, 1117, 1305
BstNSI RCATGY 1 cut(s) 1661
BstSCI CCNGG 6 cut(s) 269, 709, 714, 1098, 1115, 1303
BstSFI CTRYAG 3 cut(s) 670, 1553, 1694
BstSLI GKGCMC 1 cut(s) 259
BstUI CGCG 2 cut(s) 252, 374
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
Bsu15I ATCGAT 1 cut(s) 27
Bsu36I CCTNAGG 1 cut(s) 1572
BsuRI GGCC 8 cut(s) 63, 714, 796, 876, 917, 986, 997, 1303
BsuTUI ATCGAT 1 cut(s) 27
BtgZI GCGATG 3 cut(s) 26, 216, 1077
BtsCI GGATG 6 cut(s) 304, 647, 703, 1048, 1112, 1648
BtsI GCAGTG 1 cut(s) 1550
BtsIMutI CAGTG 2 cut(s) 851, 1550
BveI ACCTGC 1 cut(s) 380
Cac8I GCNNGC 7 cut(s) 102, 259, 321, 874, 1246, 1425, 1659
CaiI CAGNNNCTG 2 cut(s) 678, 1454
CfoI GCGC 1 cut(s) 1580
Cfr10I RCCGGY 2 cut(s) 1213, 1370
Cfr13I GGNCC 5 cut(s) 62, 662, 916, 996, 1568
ClaI ATCGAT 1 cut(s) 27
CseI GACGC 3 cut(s) 363, 380, 1619
Csp6I GTAC 2 cut(s) 721, 1561
CspAI ACCGGT 2 cut(s) 1213, 1370
CspCI CAANNNNNGTGG 2 cut(s) 1356, 1391
CviAII CATG 5 cut(s) 175, 592, 682, 1594, 1658
CviQI GTAC 2 cut(s) 721, 1561
DdeI CTNAG 6 cut(s) 811, 988, 1077, 1125, 1350, 1572
DpnI GATC 9 cut(s) 26, 69, 190, 234, 652, 1085, 1254, 1613, 1722
DpnII GATC 9 cut(s) 24, 67, 188, 232, 650, 1083, 1252, 1611, 1720
DraI TTTAAA 1 cut(s) 1192
EaeI YGGCCR 3 cut(s) 712, 794, 874
Eam1104I CTCTTC 2 cut(s) 243, 465
EarI CTCTTC 2 cut(s) 243, 465
Eco130I CCWWGG 1 cut(s) 566
Eco147I AGGCCT 2 cut(s) 986, 1303
Eco47I GGWCC 2 cut(s) 662, 1568
Eco57I CTGAAG 3 cut(s) 353, 905, 1185
Eco81I CCTNAGG 1 cut(s) 1572
Eco88I CYCGRG 1 cut(s) 1261
EcoNI CCTNNNNNAGG 2 cut(s) 991, 1308
EcoO109I RGGNCCY 2 cut(s) 662, 916
EcoRI GAATTC 1 cut(s) 497
EcoRII CCWGG 5 cut(s) 269, 709, 1098, 1115, 1303
EcoT14I CCWWGG 1 cut(s) 566
EcoT22I ATGCAT 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 566
FaeI CATG 5 cut(s) 178, 595, 685, 1597, 1661
FalI AAGNNNNNCTT 2 cut(s) 769, 801
FaqI GGGAC 2 cut(s) 383, 1513
FatI CATG 5 cut(s) 174, 591, 681, 1593, 1657
FblI GTMKAC 1 cut(s) 669
FokI GGATG 6 cut(s) 311, 654, 710, 1055, 1099, 1655
FspBI CTAG 2 cut(s) 8, 728
GlaI GCGC 1 cut(s) 1579
GsaI CCCAGC 1 cut(s) 1584
GsuI CTGGAG 4 cut(s) 418, 473, 1082, 1326
HaeII RGCGCY 1 cut(s) 1581
HaeIII GGCC 8 cut(s) 63, 714, 796, 876, 917, 986, 997, 1303
HapII CCGG 4 cut(s) 91, 715, 1214, 1371
HgaI GACGC 3 cut(s) 363, 380, 1619
HhaI GCGC 1 cut(s) 1580
Hin1I GRCGYC 1 cut(s) 1630
Hin1II CATG 5 cut(s) 178, 595, 685, 1597, 1661
Hin6I GCGC 1 cut(s) 1578
HinP1I GCGC 1 cut(s) 1578
HincII GTYRAC 1 cut(s) 1003
HindII GTYRAC 1 cut(s) 1003
HinfI GANTC 7 cut(s) 4, 50, 344, 427, 448, 815, 1273
HpaI GTTAAC 1 cut(s) 1003
HpaII CCGG 4 cut(s) 91, 715, 1214, 1371
HphI GGTGA 6 cut(s) 47, 399, 645, 1228, 1325, 1349
Hpy166II GTNNAC 8 cut(s) 116, 257, 670, 890, 943, 1003, 1492, 1568
Hpy188I TCNGA 8 cut(s) 24, 55, 333, 526, 690, 814, 924, 1720
Hpy188III TCNNGA 7 cut(s) 452, 542, 1087, 1183, 1261, 1263, 1281
Hpy8I GTNNAC 8 cut(s) 116, 257, 670, 890, 943, 1003, 1492, 1568
Hpy99I CGWCG 1 cut(s) 1635
HpyAV CCTTC 6 cut(s) 653, 904, 929, 1012, 1640, 1721
HpyCH4III ACNGT 4 cut(s) 846, 958, 1565, 1624
HpyCH4IV ACGT 1 cut(s) 328
HpyF3I CTNAG 6 cut(s) 811, 988, 1077, 1125, 1350, 1572
HpySE526I ACGT 1 cut(s) 328
Hsp92I GRCGYC 1 cut(s) 1630
Hsp92II CATG 5 cut(s) 178, 595, 685, 1597, 1661
HspAI GCGC 1 cut(s) 1578
KspAI GTTAAC 1 cut(s) 1003
Kzo9I GATC 9 cut(s) 24, 67, 188, 232, 650, 1083, 1252, 1611, 1720
LmnI GCTCC 4 cut(s) 1101, 1319, 1489, 1552
LweI GCATC 5 cut(s) 193, 292, 688, 1121, 1692
MaeI CTAG 2 cut(s) 8, 728
MaeII ACGT 1 cut(s) 328
MaeIII GTNAC 2 cut(s) 428, 739
MalI GATC 9 cut(s) 26, 69, 190, 234, 652, 1085, 1254, 1613, 1722
MboI GATC 9 cut(s) 24, 67, 188, 232, 650, 1083, 1252, 1611, 1720
MboII GAAGA 6 cut(s) 166, 230, 482, 1082, 1183, 1278
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 2 cut(s) 259, 1486
MlsI TGGCCA 1 cut(s) 876
MluCI AATT 7 cut(s) 314, 441, 497, 757, 1103, 1186, 1285
MluI ACGCGT 1 cut(s) 372
MluNI TGGCCA 1 cut(s) 876
MlyI GAGTC 4 cut(s) 338, 436, 442, 1267
MmeI TCCRAC 2 cut(s) 619, 1020
Mox20I TGGCCA 1 cut(s) 876
Mph1103I ATGCAT 1 cut(s) 307
MroXI GAANNNNTTC 1 cut(s) 1178
MscI TGGCCA 1 cut(s) 876
MseI TTAA 8 cut(s) 107, 482, 614, 852, 902, 1002, 1191, 1677
Msp20I TGGCCA 1 cut(s) 876
MspA1I CMGCKG 2 cut(s) 872, 1454
MspI CCGG 4 cut(s) 91, 715, 1214, 1371
MspR9I CCNGG 6 cut(s) 271, 711, 716, 1100, 1117, 1305
MvaI CCWGG 5 cut(s) 271, 711, 1100, 1117, 1305
MvnI CGCG 2 cut(s) 252, 374
NciI CCSGG 1 cut(s) 716
NdeII GATC 9 cut(s) 24, 67, 188, 232, 650, 1083, 1252, 1611, 1720
NlaIII CATG 5 cut(s) 178, 595, 685, 1597, 1661
NlaIV GGNNCC 6 cut(s) 64, 234, 531, 597, 1097, 1548
NmeAIII GCCGAG 1 cut(s) 926
NmuCI GTSAC 2 cut(s) 428, 739
NsiI ATGCAT 1 cut(s) 307
NspI RCATGY 1 cut(s) 1661
PaeI GCATGC 1 cut(s) 1661
PaeR7I CTCGAG 1 cut(s) 1261
PceI AGGCCT 2 cut(s) 986, 1303
PdmI GAANNNNTTC 1 cut(s) 1178
PfeI GAWTC 3 cut(s) 4, 50, 815
PflFI GACNNNGTC 1 cut(s) 1669
PfoI TCCNGGA 1 cut(s) 1098
PinAI ACCGGT 2 cut(s) 1213, 1370
PleI GAGTC 4 cut(s) 338, 435, 442, 1267
PpsI GAGTC 4 cut(s) 338, 435, 442, 1267
PpuMI RGGWCCY 1 cut(s) 662
PshBI ATTAAT 1 cut(s) 107
Psp5II RGGWCCY 1 cut(s) 662
Psp6I CCWGG 5 cut(s) 269, 709, 1098, 1115, 1303
PspFI CCCAGC 1 cut(s) 1580
PspGI CCWGG 5 cut(s) 269, 709, 1098, 1115, 1303
PspN4I GGNNCC 6 cut(s) 64, 234, 531, 597, 1097, 1548
PspPI GGNCC 5 cut(s) 62, 662, 916, 996, 1568
PspPPI RGGWCCY 1 cut(s) 662
PstI CTGCAG 2 cut(s) 1557, 1698
PstNI CAGNNNCTG 2 cut(s) 678, 1454
PsuI RGATCY 1 cut(s) 232
PsyI GACNNNGTC 1 cut(s) 1669
PvuII CAGCTG 1 cut(s) 1454
RsaI GTAC 2 cut(s) 722, 1562
RsaNI GTAC 2 cut(s) 721, 1561
SaqAI TTAA 8 cut(s) 107, 482, 614, 852, 902, 1002, 1191, 1677
Sau3AI GATC 9 cut(s) 24, 67, 188, 232, 650, 1083, 1252, 1611, 1720
Sau96I GGNCC 5 cut(s) 62, 662, 916, 996, 1568
SchI GAGTC 4 cut(s) 338, 436, 442, 1267
ScrFI CCNGG 6 cut(s) 271, 711, 716, 1100, 1117, 1305
SduI GDGCHC 2 cut(s) 259, 1486
SfaNI GCATC 5 cut(s) 193, 292, 688, 1121, 1692
SfcI CTRYAG 3 cut(s) 670, 1553, 1694
Sfr274I CTCGAG 1 cut(s) 1261
SinI GGWCC 2 cut(s) 662, 1568
SlaI CTCGAG 1 cut(s) 1261
SmlI CTYRAG 1 cut(s) 1261
SmoI CTYRAG 1 cut(s) 1261
SphI GCATGC 1 cut(s) 1661
Sse9I AATT 7 cut(s) 314, 441, 497, 757, 1103, 1186, 1285
SseBI AGGCCT 2 cut(s) 986, 1303
SsiI CCGC 6 cut(s) 162, 252, 291, 824, 870, 1708
SspI AATATT 1 cut(s) 752
SspMI CTAG 2 cut(s) 8, 728
StuI AGGCCT 2 cut(s) 986, 1303
StyD4I CCNGG 6 cut(s) 269, 709, 714, 1098, 1115, 1303
StyI CCWWGG 1 cut(s) 566
TaaI ACNGT 4 cut(s) 846, 958, 1565, 1624
TaiI ACGT 1 cut(s) 331
TasI AATT 7 cut(s) 314, 441, 497, 757, 1103, 1186, 1285
TatI WGTACW 1 cut(s) 720
TauI GCSGC 2 cut(s) 165, 293
TfiI GAWTC 3 cut(s) 4, 50, 815
Tru1I TTAA 8 cut(s) 107, 482, 614, 852, 902, 1002, 1191, 1677
Tru9I TTAA 8 cut(s) 107, 482, 614, 852, 902, 1002, 1191, 1677
TscAI CASTG 2 cut(s) 851, 1557
TseFI GTSAC 2 cut(s) 428, 739
Tsp45I GTSAC 2 cut(s) 428, 739
TspDTI ATGAA 7 cut(s) 63, 163, 510, 1178, 1238, 1356, 1659
TspGWI ACGGA 2 cut(s) 433, 1713
TspRI CASTG 2 cut(s) 851, 1557
Tth111I GACNNNGTC 1 cut(s) 1669
VneI GTGCAC 1 cut(s) 255
VpaK11BI GGWCC 2 cut(s) 662, 1568
VspI ATTAAT 1 cut(s) 107
XagI CCTNNNNNAGG 2 cut(s) 991, 1308
XapI RAATTY 2 cut(s) 497, 1186
XceI RCATGY 1 cut(s) 1661
XcmI CCANNNNNNNNNTGG 1 cut(s) 796
XhoI CTCGAG 1 cut(s) 1261
XmiI GTMKAC 1 cut(s) 669
XmnI GAANNNNTTC 1 cut(s) 1178
XspI CTAG 2 cut(s) 8, 728
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.