Rh5AG059000

RNA polymerase-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003596
Physical Location & Seq
Reverse (-)
5066116 .. 5069591
3476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG059000.1

Sequence Viewer

Length: 1974 bp
ATGGCAGATTTGGATGATTTGCTCTTGGAGGCTGCAGGAAGAACAAGTTCGGGGCGGAAAAACCGGCACTCACATCCAACTTCAAAGAGGAGACGTGATGATTCATATTCTGATGGTGGAAGTGACTCTAGGGGTGAGGACTCTGATGATGGTCGGGGCTATGCGAGTAGGAAACCCTCTGGATCTCAAGTTCCTTTGAAGAAGCGGCTGGACCCTTCAGAAGTAGATGATGAACATGGCAGCCAGGAAGAAGGTGATTATAATGATAGCGGTTCTGACCGTGGGGGAGAGAGCAATGAATCTGATGTTGGCAGTGATCTTTACAAAGATGAAGATGACAGGCGGAAGCTTGCAGAAATGTCTGAACTTCAAAGAGAGCTGATTCTGTCTGAAAGAGCTCAGAAGAAAGATGATAAGAGTCTAAAGGAGAAATTCAGACCAAAGTGGGATAAAGGGAAGGCCACACAGTCCAGGAAAGTGACTCCACCTCTCCCATCTTCTCGAGTGCGCTCCTCAGCTAGATCTGCTGACAGGGCAGCTGCGAAAGATGATGCACTGAATGAGTTACGAGCAAAACGTTTGAAACAGCAGGACCCTGAGGCTCACCGTAAATTGAGAGATGCATCTAGAGGAAGTGCAGGGAGTAGGAATTTCTCACACACCAACAGAAAGTCTTTCTCTGCTGTCGGTCGGAGTAGCTCTAGTCAAAGTGATAGTGAAAGTCGGTCTCATAGTGATGATGAAGGATCAAGTGCAGATGATGCTATTGACAGTGATGATGAAAGGGGCACACAGGGACTAGTATTTGAAGATATAAAGGAAATTACCATTCGGAGGTCAAGACTTGCAAAGTGGCTTATGGAACCTTTCTTTGAGGAATTAATCGTGGGTTGCTTTGTACGGGTTGGAATTGGGAAGACTAAGTCTGGGCGGCCCATCTACAGGCTCTGCTCGGTCCGTAATGTTGACTCTTCGGATCCTGACCGGCAGTACAAACTAGAGAATAAAACCACACACAAGTATCTGAATGTCGTTTGGGGCAATGAAAACTCTGCTGCCAGGTGGCAGATGGCTATGGTTTCAGACTCTTTACCTCTGGAGGAGGAGTATGATCAGTGGGTTAGAGAGGTGGAGAAAAATGGTGGCCGCTTGCCAAGCAAAGAGGATGTGTTGGAAAAAAAGGAAGCCATAAAAAAAACAAATACATTTGTCTACTCAGCTGAAACTGTGAAGCAGATGATACAGGAGAAAAAATCTGCTTCGTCAAGGCCATTGAACATTGCACTTGAGAAGGACCGGTTGAGGAGGGAATTGGAAATTGCACAAAGCAAGCATGATGATGCAGAGGTTGAAAGGATCAAGGCAAGACTTCAGCAGTTGGACGCACGGCGACAATCACAGGGGAAAGATAGCAAGGCTGTTAGGCTTGCTGAGATGAACAGAAAGAATAGAGTTGACAATTTCAAGAATGCCTCAGGATTAAAACCTGTGAAAACAGGTTTAAAAGCTGGAGAGGCTGGTTATGATCCATTTTCGAGGAGATGGACCAGGTCAAGAAATTACTATGTTTCAAAGCCTGGTGAACAAAAAGATGATGTTGAGGAAACTGCTGTTGCTGCTGAGGCATTGGCAGAGGTGGAGACTAATGGAACAGAAGGGATAGTAGCAGTACGAGCTGGCTTGGTAGCCACAGCGGCAGCTCTGGAAGCTGCAGCTGGTGCTGGGAAGTTGATCGATACGATGGCTCCTGTTGATCAAGGAACATCGTCAAATCCATTGCACAATTTTGAGCTGCCGATCTCATTGGCCACGCTTCAGAAGTTTGGTGGGCCGCAAGGAGCTCAGGAAGGATTTATGGCAAGAAAACAAAGGATAGAAGCAACAGTTGGTTGCCGAGTCCCAGAGGATGATGGGAGGAGGCATGCATTGACGCTTACAGTTAGTGATTACAAGAGAAGAAGAGGGCTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000428 GO:0000988 GO:0000989 GO:0000993 GO:0001076 GO:0001098 GO:0001099 GO:0001701 GO:0001704 GO:0001706 GO:0001711 GO:0001824 GO:0001832 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007369 GO:0007492 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009790 GO:0009792 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019827 GO:0019899 GO:0030154 GO:0030880 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0034243 GO:0034968 GO:0035987 GO:0036211 GO:0040007 GO:0043009 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045165 GO:0045309 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048589 GO:0048598 GO:0048646 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050815 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051219 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0055029 GO:0060255 GO:0060795 GO:0061695 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:0097159 GO:0098727 GO:0099122 GO:0140110 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905269 GO:1990234 GO:1990269 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3

Protein Analysis

657

Amino Acids

73.22

Weight (kDa)

8.79

Isoelectric Point (pI)

53.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plus-3 PF03126 271 - 377 3.9e-32 Plus-3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 261
AccI GTMKAC 1 cut(s) 1212
AciI CCGC 8 cut(s) 55, 205, 270, 343, 931, 1147, 1694, 1832
AclI AACGTT 1 cut(s) 577
AclWI GGATC 6 cut(s) 190, 754, 971, 984, 1364, 1520
AcoI YGGCCR 2 cut(s) 1144, 1806
AcsI RAATTY 2 cut(s) 431, 649
AcuI CTGAAG 3 cut(s) 201, 1355, 1799
AfaI GTAC 3 cut(s) 900, 992, 1671
AfiI CCNNNNNNNGG 2 cut(s) 834, 942
AgeI ACCGGT 1 cut(s) 1296
AgsI TTSAA 9 cut(s) 84, 199, 371, 583, 809, 1276, 1352, 1465, 1572
AhlI ACTAGT 1 cut(s) 799
AjiI CACGTC 1 cut(s) 95
AjnI CCWGG 5 cut(s) 243, 470, 1058, 1547, 1576
AjuI GAANNNNNNNTTGG 4 cut(s) 291, 323, 1869, 1901
AloI GAACNNNNNNTCC 2 cut(s) 174, 206
Alw21I GWGCWC 2 cut(s) 400, 1843
Alw26I GTCTC 3 cut(s) 85, 732, 1634
AlwI GGATC 6 cut(s) 190, 754, 971, 984, 1364, 1520
AlwNI CAGNNNCTG 1 cut(s) 948
Ama87I CYCGRG 1 cut(s) 501
AoxI GGCC 6 cut(s) 459, 932, 1144, 1268, 1806, 1829
ApoI RAATTY 2 cut(s) 431, 649
AseI ATTAAT 1 cut(s) 881
AsiGI ACCGGT 1 cut(s) 1296
Asp700I GAANNNNTTC 1 cut(s) 46
AspLEI GCGC 1 cut(s) 510
AspS9I GGNCC 7 cut(s) 211, 592, 933, 955, 1294, 1545, 1829
AsuHPI GGTGA 4 cut(s) 146, 266, 596, 1592
AvaI CYCGRG 1 cut(s) 501
AvaII GGWCC 5 cut(s) 211, 592, 955, 1294, 1545
AxyI CCTNAGG 2 cut(s) 597, 1474
BaeGI GKGCMC 1 cut(s) 791
BaeI ACNNNNGTAYC 2 cut(s) 1004, 1037
BalI TGGCCA 1 cut(s) 1808
BamHI GGATCC 1 cut(s) 976
BanII GRGCYC 2 cut(s) 400, 1843
BbsI GAAGAC 1 cut(s) 923
Bbv12I GWGCWC 2 cut(s) 400, 1843
BbvCI CCTCAGC 2 cut(s) 514, 1620
BccI CCATC 8 cut(s) 107, 143, 502, 944, 1063, 1536, 1735, 1904
BceAI ACGGC 1 cut(s) 1403
BciT130I CCWGG 5 cut(s) 245, 472, 1060, 1549, 1578
BclI TGATCA 2 cut(s) 1111, 1753
BcoDI GTCTC 3 cut(s) 85, 732, 1634
BcuI ACTAGT 1 cut(s) 799
BfaI CTAG 6 cut(s) 129, 519, 627, 702, 800, 998
BfmI CTRYAG 3 cut(s) 33, 940, 1710
BglI GCCNNNNNGGC 1 cut(s) 1694
BglII AGATCT 1 cut(s) 521
Bme1390I CCNGG 5 cut(s) 245, 472, 1060, 1549, 1578
Bme18I GGWCC 5 cut(s) 211, 592, 955, 1294, 1545
BmeT110I CYCGRG 1 cut(s) 501
BmgBI CACGTC 1 cut(s) 95
BmgT120I GGNCC 7 cut(s) 211, 592, 933, 955, 1294, 1545, 1829
BmiI GGNNCC 5 cut(s) 213, 594, 864, 978, 1746
BmrFI CCNGG 5 cut(s) 245, 472, 1060, 1549, 1578
BmsI GCATC 5 cut(s) 541, 610, 632, 751, 1330
BpiI GAAGAC 1 cut(s) 923
BplI GAGNNNNNCTC 1 cut(s) 1953
BpmI CTGGAG 2 cut(s) 1118, 1530
Bpu10I CCTNAGC 3 cut(s) 514, 1620, 1842
BpuEI CTTGAG 2 cut(s) 171, 1307
Bsa29I ATCGAT 1 cut(s) 1734
BsaI GGTCTC 1 cut(s) 732
BsaJI CCNNGG 1 cut(s) 280
BsaWI WCCGGW 1 cut(s) 1296
BsaXI ACNNNNNCTCC 4 cut(s) 1091, 1121, 1729, 1759
Bsc4I CCNNNNNNNGG 2 cut(s) 834, 942
Bse118I RCCGGY 3 cut(s) 63, 984, 1296
Bse21I CCTNAGG 2 cut(s) 597, 1474
Bse3DI GCAATG 4 cut(s) 301, 1048, 1278, 1775
BseBI CCWGG 5 cut(s) 245, 472, 1060, 1549, 1578
BseCI ATCGAT 1 cut(s) 1734
BseDI CCNNGG 1 cut(s) 280
BseGI GGATG 4 cut(s) 19, 73, 1171, 1912
BseLI CCNNNNNNNGG 2 cut(s) 834, 942
BseMI GCAATG 4 cut(s) 301, 1048, 1278, 1775
BseMII CTCAG 8 cut(s) 413, 528, 588, 1230, 1422, 1488, 1611, 1856
BseRI GAGGAG 7 cut(s) 103, 502, 1115, 1118, 1318, 1552, 1930
BseSI GKGCMC 1 cut(s) 791
BseYI CCCAGC 1 cut(s) 1721
BsgI GTGCAG 2 cut(s) 657, 774
Bsh1285I CGRYCG 1 cut(s) 691
BshFI GGCC 6 cut(s) 461, 934, 1146, 1270, 1808, 1831
BshTI ACCGGT 1 cut(s) 1296
BshVI ATCGAT 1 cut(s) 1734
BsiEI CGRYCG 1 cut(s) 691
BsiHKAI GWGCWC 2 cut(s) 400, 1843
BsiHKCI CYCGRG 1 cut(s) 501
BsiSI CCGG 3 cut(s) 64, 985, 1297
BslFI GGGAC 2 cut(s) 810, 1883
BslI CCNNNNNNNGG 2 cut(s) 834, 942
BsmAI GTCTC 3 cut(s) 85, 732, 1634
BsmBI CGTCTC 1 cut(s) 85
BsmFI GGGAC 2 cut(s) 810, 1883
BsmI GAATGC 1 cut(s) 1474
BsnI GGCC 6 cut(s) 461, 934, 1146, 1270, 1808, 1831
Bso31I GGTCTC 1 cut(s) 732
BsoBI CYCGRG 1 cut(s) 501
Bsp1286I GDGCHC 3 cut(s) 400, 791, 1843
BspACI CCGC 8 cut(s) 55, 205, 270, 343, 931, 1147, 1694, 1832
BspANI GGCC 6 cut(s) 461, 934, 1146, 1270, 1808, 1831
BspCNI CTCAG 8 cut(s) 412, 527, 589, 1229, 1423, 1487, 1612, 1855
BspDI ATCGAT 1 cut(s) 1734
BspLI GGNNCC 5 cut(s) 213, 594, 864, 978, 1746
BspMAI CTGCAG 2 cut(s) 37, 1714
BspPI GGATC 6 cut(s) 190, 754, 971, 984, 1364, 1520
BspTNI GGTCTC 1 cut(s) 732
BsrDI GCAATG 4 cut(s) 301, 1048, 1278, 1775
BsrFI RCCGGY 3 cut(s) 63, 984, 1296
BssAI RCCGGY 3 cut(s) 63, 984, 1296
BssECI CCNNGG 1 cut(s) 280
Bst2UI CCWGG 5 cut(s) 245, 472, 1060, 1549, 1578
Bst4CI ACNGT 7 cut(s) 281, 468, 608, 773, 1228, 1885, 1939
Bst6I CTCTTC 2 cut(s) 976, 1954
BstAPI GCANNNNNTGC 2 cut(s) 761, 1718
BstC8I GCNNGC 6 cut(s) 351, 1151, 1331, 1428, 1678, 1923
BstDEI CTNAG 9 cut(s) 399, 514, 597, 921, 1216, 1431, 1474, 1620, 1842
BstDSI CCRYGG 1 cut(s) 280
BstF5I GGATG 4 cut(s) 19, 73, 1171, 1912
BstHHI GCGC 1 cut(s) 510
BstMAI GTCTC 3 cut(s) 85, 732, 1634
BstMCI CGRYCG 1 cut(s) 691
BstNI CCWGG 5 cut(s) 245, 472, 1060, 1549, 1578
BstNSI RCATGY 1 cut(s) 1925
BstSCI CCNGG 5 cut(s) 243, 470, 1058, 1547, 1576
BstSFI CTRYAG 3 cut(s) 33, 940, 1710
BstSLI GKGCMC 1 cut(s) 791
BstV2I GAAGAC 1 cut(s) 923
BstX2I RGATCY 3 cut(s) 182, 521, 976
BstYI RGATCY 3 cut(s) 182, 521, 976
Bsu15I ATCGAT 1 cut(s) 1734
Bsu36I CCTNAGG 2 cut(s) 597, 1474
BsuRI GGCC 6 cut(s) 461, 934, 1146, 1270, 1808, 1831
BsuTUI ATCGAT 1 cut(s) 1734
BtgI CCRYGG 1 cut(s) 280
BtrI CACGTC 1 cut(s) 95
BtsCI GGATG 4 cut(s) 19, 73, 1171, 1912
BtsI GCAGTG 1 cut(s) 319
BtsIMutI CAGTG 4 cut(s) 319, 554, 778, 1121
Cac8I GCNNGC 6 cut(s) 351, 1151, 1331, 1428, 1678, 1923
CaiI CAGNNNCTG 1 cut(s) 948
CfoI GCGC 1 cut(s) 510
Cfr10I RCCGGY 3 cut(s) 63, 984, 1296
Cfr13I GGNCC 7 cut(s) 211, 592, 933, 955, 1294, 1545, 1829
ClaI ATCGAT 1 cut(s) 1734
CpoI CGGWCCG 1 cut(s) 955
CseI GACGC 2 cut(s) 1391, 1939
CsiI ACCWGGT 1 cut(s) 1547
Csp6I GTAC 3 cut(s) 899, 991, 1670
CspAI ACCGGT 1 cut(s) 1296
CspI CGGWCCG 1 cut(s) 955
CviAII CATG 3 cut(s) 236, 1334, 1922
CviQI GTAC 3 cut(s) 899, 991, 1670
DdeI CTNAG 9 cut(s) 399, 514, 597, 921, 1216, 1431, 1474, 1620, 1842
DraI TTTAAA 1 cut(s) 1503
EaeI YGGCCR 2 cut(s) 1144, 1806
Eam1104I CTCTTC 2 cut(s) 976, 1954
EarI CTCTTC 2 cut(s) 976, 1954
EciI GGCGGA 2 cut(s) 70, 358
Ecl136II GAGCTC 2 cut(s) 398, 1841
Eco24I GRGCYC 2 cut(s) 400, 1843
Eco31I GGTCTC 1 cut(s) 732
Eco47I GGWCC 5 cut(s) 211, 592, 955, 1294, 1545
Eco53kI GAGCTC 2 cut(s) 398, 1841
Eco57I CTGAAG 3 cut(s) 201, 1355, 1799
Eco81I CCTNAGG 2 cut(s) 597, 1474
Eco88I CYCGRG 1 cut(s) 501
EcoICRI GAGCTC 2 cut(s) 398, 1841
EcoO109I RGGNCCY 1 cut(s) 592
EcoRII CCWGG 5 cut(s) 243, 470, 1058, 1547, 1576
EcoT22I ATGCAT 2 cut(s) 625, 1927
EcoT38I GRGCYC 2 cut(s) 400, 1843
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 3 cut(s) 239, 1337, 1925
FaqI GGGAC 2 cut(s) 810, 1883
FatI CATG 3 cut(s) 235, 1333, 1921
FbaI TGATCA 2 cut(s) 1111, 1753
FblI GTMKAC 1 cut(s) 1212
FokI GGATG 4 cut(s) 26, 60, 1178, 1919
FriOI GRGCYC 2 cut(s) 400, 1843
FspBI CTAG 6 cut(s) 129, 519, 627, 702, 800, 998
GlaI GCGC 1 cut(s) 509
GsaI CCCAGC 1 cut(s) 1725
GsuI CTGGAG 2 cut(s) 1118, 1530
HaeIII GGCC 6 cut(s) 461, 934, 1146, 1270, 1808, 1831
HapII CCGG 3 cut(s) 64, 985, 1297
HgaI GACGC 2 cut(s) 1391, 1939
HhaI GCGC 1 cut(s) 510
Hin1II CATG 3 cut(s) 239, 1337, 1925
Hin6I GCGC 1 cut(s) 508
HinP1I GCGC 1 cut(s) 508
HincII GTYRAC 2 cut(s) 967, 1456
HindII GTYRAC 2 cut(s) 967, 1456
HindIII AAGCTT 1 cut(s) 347
HpaII CCGG 3 cut(s) 64, 985, 1297
HphI GGTGA 4 cut(s) 146, 266, 596, 1592
Hpy166II GTNNAC 4 cut(s) 967, 1213, 1456, 1583
Hpy8I GTNNAC 4 cut(s) 967, 1213, 1456, 1583
HpyAV CCTTC 7 cut(s) 225, 245, 451, 737, 1285, 1649, 1841
HpyCH4III ACNGT 7 cut(s) 281, 468, 608, 773, 1228, 1885, 1939
HpyCH4IV ACGT 2 cut(s) 94, 577
HpyF3I CTNAG 9 cut(s) 399, 514, 597, 921, 1216, 1431, 1474, 1620, 1842
HpySE526I ACGT 2 cut(s) 94, 577
Hsp92II CATG 3 cut(s) 239, 1337, 1925
HspAI GCGC 1 cut(s) 508
Ksp22I TGATCA 2 cut(s) 1111, 1753
LmnI GCTCC 3 cut(s) 515, 1750, 1838
LweI GCATC 5 cut(s) 541, 610, 632, 751, 1330
MabI ACCWGGT 1 cut(s) 1547
MaeI CTAG 6 cut(s) 129, 519, 627, 702, 800, 998
MaeII ACGT 2 cut(s) 94, 577
MaeIII GTNAC 3 cut(s) 122, 478, 564
MflI RGATCY 3 cut(s) 182, 521, 976
MhlI GDGCHC 3 cut(s) 400, 791, 1843
MlsI TGGCCA 1 cut(s) 1808
MluNI TGGCCA 1 cut(s) 1808
MlyI GAGTC 7 cut(s) 119, 134, 427, 475, 962, 1079, 1905
MmeI TCCRAC 5 cut(s) 101, 671, 886, 1152, 1359
Mox20I TGGCCA 1 cut(s) 1808
Mph1103I ATGCAT 2 cut(s) 625, 1927
MroXI GAANNNNTTC 1 cut(s) 46
MscI TGGCCA 1 cut(s) 1808
MseI TTAA 3 cut(s) 881, 1481, 1502
MslI CAYNNNNRTG 2 cut(s) 735, 1338
Msp20I TGGCCA 1 cut(s) 1808
MspA1I CMGCKG 4 cut(s) 539, 1220, 1694, 1715
MspI CCGG 3 cut(s) 64, 985, 1297
MspR9I CCNGG 5 cut(s) 245, 472, 1060, 1549, 1578
Mva1269I GAATGC 1 cut(s) 1474
MvaI CCWGG 5 cut(s) 245, 472, 1060, 1549, 1578
NlaIII CATG 3 cut(s) 239, 1337, 1925
NlaIV GGNNCC 5 cut(s) 213, 594, 864, 978, 1746
NmeAIII GCCGAG 1 cut(s) 1919
NmuCI GTSAC 2 cut(s) 122, 478
NsiI ATGCAT 2 cut(s) 625, 1927
NspI RCATGY 1 cut(s) 1925
PaeI GCATGC 1 cut(s) 1925
PaeR7I CTCGAG 1 cut(s) 501
PcsI WCGNNNNNNNCGW 1 cut(s) 574
PctI GAATGC 1 cut(s) 1474
PdmI GAANNNNTTC 1 cut(s) 46
PfeI GAWTC 3 cut(s) 101, 299, 382
PflFI GACNNNGTC 2 cut(s) 922, 1549
PfoI TCCNGGA 1 cut(s) 470
PinAI ACCGGT 1 cut(s) 1296
PleI GAGTC 7 cut(s) 119, 134, 426, 475, 962, 1079, 1904
PpsI GAGTC 7 cut(s) 119, 134, 426, 475, 962, 1079, 1904
PpuMI RGGWCCY 1 cut(s) 592
PshBI ATTAAT 1 cut(s) 881
PsiI TTATAA 1 cut(s) 261
Psp124BI GAGCTC 2 cut(s) 400, 1843
Psp1406I AACGTT 1 cut(s) 577
Psp5II RGGWCCY 1 cut(s) 592
Psp6I CCWGG 5 cut(s) 243, 470, 1058, 1547, 1576
PspFI CCCAGC 1 cut(s) 1721
PspGI CCWGG 5 cut(s) 243, 470, 1058, 1547, 1576
PspN4I GGNNCC 5 cut(s) 213, 594, 864, 978, 1746
PspPI GGNCC 7 cut(s) 211, 592, 933, 955, 1294, 1545, 1829
PspPPI RGGWCCY 1 cut(s) 592
PstI CTGCAG 2 cut(s) 37, 1714
PstNI CAGNNNCTG 1 cut(s) 948
PsuI RGATCY 3 cut(s) 182, 521, 976
PsyI GACNNNGTC 2 cut(s) 922, 1549
PvuII CAGCTG 3 cut(s) 539, 1220, 1715
RsaI GTAC 3 cut(s) 900, 992, 1671
RsaNI GTAC 3 cut(s) 899, 991, 1670
RseI CAYNNNNRTG 2 cut(s) 735, 1338
Rsr2I CGGWCCG 1 cut(s) 955
RsrII CGGWCCG 1 cut(s) 955
SacI GAGCTC 2 cut(s) 400, 1843
SaqAI TTAA 3 cut(s) 881, 1481, 1502
Sau96I GGNCC 7 cut(s) 211, 592, 933, 955, 1294, 1545, 1829
SchI GAGTC 7 cut(s) 119, 134, 427, 475, 962, 1079, 1905
ScrFI CCNGG 5 cut(s) 245, 472, 1060, 1549, 1578
SduI GDGCHC 3 cut(s) 400, 791, 1843
SexAI ACCWGGT 1 cut(s) 1547
SfaNI GCATC 5 cut(s) 541, 610, 632, 751, 1330
SfcI CTRYAG 3 cut(s) 33, 940, 1710
Sfr274I CTCGAG 1 cut(s) 501
SinI GGWCC 5 cut(s) 211, 592, 955, 1294, 1545
SlaI CTCGAG 1 cut(s) 501
SmiMI CAYNNNNRTG 2 cut(s) 735, 1338
SmlI CTYRAG 3 cut(s) 186, 501, 1286
SmoI CTYRAG 3 cut(s) 186, 501, 1286
SpeI ACTAGT 1 cut(s) 799
SphI GCATGC 1 cut(s) 1925
SsiI CCGC 8 cut(s) 55, 205, 270, 343, 931, 1147, 1694, 1832
SspMI CTAG 6 cut(s) 129, 519, 627, 702, 800, 998
SstI GAGCTC 2 cut(s) 400, 1843
StyD4I CCNGG 5 cut(s) 243, 470, 1058, 1547, 1576
TaaI ACNGT 7 cut(s) 281, 468, 608, 773, 1228, 1885, 1939
TaiI ACGT 2 cut(s) 97, 580
TaqI TCGA 3 cut(s) 502, 1535, 1734
TaqII GACCGA 3 cut(s) 677, 714, 943
TatI WGTACW 1 cut(s) 990
TauI GCSGC 5 cut(s) 208, 934, 1149, 1697, 1834
TfiI GAWTC 3 cut(s) 101, 299, 382
Tru1I TTAA 3 cut(s) 881, 1481, 1502
Tru9I TTAA 3 cut(s) 881, 1481, 1502
TscAI CASTG 4 cut(s) 319, 561, 778, 1121
TseFI GTSAC 2 cut(s) 122, 478
Tsp45I GTSAC 2 cut(s) 122, 478
TspDTI ATGAA 8 cut(s) 93, 246, 312, 345, 756, 795, 1059, 1451
TspGWI ACGGA 1 cut(s) 947
TspRI CASTG 4 cut(s) 319, 561, 778, 1121
Tth111I GACNNNGTC 2 cut(s) 922, 1549
VpaK11BI GGWCC 5 cut(s) 211, 592, 955, 1294, 1545
VspI ATTAAT 1 cut(s) 881
XapI RAATTY 2 cut(s) 431, 649
XbaI TCTAGA 1 cut(s) 626
XceI RCATGY 1 cut(s) 1925
XcmI CCANNNNNNNNNTGG 1 cut(s) 1066
XhoI CTCGAG 1 cut(s) 501
XmiI GTMKAC 1 cut(s) 1212
XmnI GAANNNNTTC 1 cut(s) 46
XspI CTAG 6 cut(s) 129, 519, 627, 702, 800, 998
Zsp2I ATGCAT 2 cut(s) 625, 1927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.