RNA polymerase-associated protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G61040 AT1G61040 AT1G61040 |
| fragaria_vesca | FvH4_3g04783 FvH4_3g04783 FvH4_3g04783 FvH4_6g03621 FvH4_6g07870 |
| malus_domestica | MD04G1191400.v1.1 MD10G1061800.v1.1 |
| prunus_persica | Prupe.3G050300_v2.0.a1 Prupe.6G309900_v2.0.a1 |
| pyrus_communis | pycom04g16890 pycom12g19070 |
| rosa_chinensis | RchiOBHm_Chr3g0457571 RchiOBHm_Chr5g0007801 |
| rosa_laevigata | RLG00000025209 RLG00000031496 |
| rosa_multiflora | Rmu_sc0005098.1_g000013 Rmu_sc0005321.1_g000003 Rmu_sc0007404.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00068600 Rroxscaffold_6G00421720 |
| rosa_rugosa | Rorug03G0021500 Rorug04G0430500 |
| rosa_samantha | Rh3AG082100 Rh3BG084400 Rh3CG084600 Rh3DG085800 Rh5AG059000 Rh5BG056000 Rh5CG065700 Rh5DG055100 |
| rosa_wichuraiana | Rw3G007050 Rw5G006080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1577 |
| Acc36I | ACCTGC | 2 cut(s) | 1577, 1755 |
| AccB1I | GGYRCC | 1 cut(s) | 1845 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1342 |
| AccI | GTMKAC | 1 cut(s) | 903 |
| AccII | CGCG | 1 cut(s) | 480 |
| AciI | CCGC | 2 cut(s) | 480, 1855 |
| AclWI | GGATC | 1 cut(s) | 1484 |
| AcoI | YGGCCR | 1 cut(s) | 1108 |
| AcsI | RAATTY | 2 cut(s) | 16, 1423 |
| AcuI | CTGAAG | 4 cut(s) | 209, 581, 1422, 1754 |
| AfaI | GTAC | 4 cut(s) | 486, 631, 956, 1102 |
| AfeI | AGCGCT | 1 cut(s) | 1656 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 447, 1066, 1230, 1342, 1547, 1855 |
| AflIII | ACRYGT | 1 cut(s) | 753 |
| AgsI | TTSAA | 6 cut(s) | 203, 347, 538, 991, 1157, 1447 |
| AjiI | CACGTC | 1 cut(s) | 754 |
| AjnI | CCWGG | 7 cut(s) | 125, 624, 1059, 1335, 1352, 1362, 1540 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1824, 1856 |
| Alw21I | GWGCWC | 1 cut(s) | 1702 |
| Alw26I | GTCTC | 3 cut(s) | 449, 480, 1048 |
| AlwI | GGATC | 1 cut(s) | 1484 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1052 |
| Ama87I | CYCGRG | 1 cut(s) | 177 |
| Aor51HI | AGCGCT | 1 cut(s) | 1656 |
| AoxI | GGCC | 5 cut(s) | 286, 1108, 1232, 1380, 1538 |
| ApoI | RAATTY | 2 cut(s) | 16, 1423 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 46 |
| AspA2I | CCTAGG | 1 cut(s) | 80 |
| AspLEI | GCGC | 2 cut(s) | 1657, 1796 |
| AspS9I | GGNCC | 3 cut(s) | 287, 896, 1784 |
| AsuHPI | GGTGA | 4 cut(s) | 575, 627, 740, 1565 |
| AvaI | CYCGRG | 1 cut(s) | 177 |
| AvaII | GGWCC | 2 cut(s) | 896, 1784 |
| AvrII | CCTAGG | 1 cut(s) | 80 |
| AxyI | CCTNAGG | 1 cut(s) | 1788 |
| BanI | GGYRCC | 1 cut(s) | 1845 |
| BbsI | GAAGAC | 1 cut(s) | 141 |
| Bbv12I | GWGCWC | 1 cut(s) | 1702 |
| BbvCI | CCTCAGC | 1 cut(s) | 1566 |
| BccI | CCATC | 5 cut(s) | 236, 380, 719, 1027, 1500 |
| BceAI | ACGGC | 1 cut(s) | 80 |
| BciT130I | CCWGG | 7 cut(s) | 127, 626, 1061, 1337, 1354, 1364, 1542 |
| BcoDI | GTCTC | 3 cut(s) | 449, 480, 1048 |
| BfaI | CTAG | 5 cut(s) | 81, 498, 962, 1512, 1927 |
| BfmI | CTRYAG | 4 cut(s) | 904, 1205, 1584, 1665 |
| BfoI | RGCGCY | 2 cut(s) | 1658, 1797 |
| BfuAI | ACCTGC | 2 cut(s) | 1577, 1755 |
| BglII | AGATCT | 1 cut(s) | 434 |
| BlnI | CCTAGG | 1 cut(s) | 80 |
| Bme1390I | CCNGG | 7 cut(s) | 127, 626, 1061, 1337, 1354, 1364, 1542 |
| Bme18I | GGWCC | 2 cut(s) | 896, 1784 |
| BmeT110I | CYCGRG | 1 cut(s) | 177 |
| BmgBI | CACGTC | 1 cut(s) | 754 |
| BmgT120I | GGNCC | 3 cut(s) | 287, 896, 1784 |
| BmiI | GGNNCC | 5 cut(s) | 100, 831, 1334, 1764, 1847 |
| BmrFI | CCNGG | 7 cut(s) | 127, 626, 1061, 1337, 1354, 1364, 1542 |
| BmsI | GCATC | 5 cut(s) | 520, 722, 922, 1140, 1358 |
| BpiI | GAAGAC | 1 cut(s) | 141 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 1905 |
| BpmI | CTGGAG | 5 cut(s) | 109, 652, 1319, 1563, 1686 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1566 |
| BpuEI | CTTGAG | 2 cut(s) | 47, 1483 |
| BsaBI | GATNNNNATC | 1 cut(s) | 147 |
| BsaI | GGTCTC | 1 cut(s) | 1048 |
| BsaJI | CCNNGG | 8 cut(s) | 80, 126, 625, 800, 1059, 1362, 1363, 1377 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 646, 676, 1055, 1085, 1202, 1232, 1684, 1714 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 447, 1066, 1230, 1342, 1547, 1855 |
| Bse118I | RCCGGY | 1 cut(s) | 948 |
| Bse1I | ACTGG | 4 cut(s) | 669, 1235, 1596, 1703 |
| Bse21I | CCTNAGG | 1 cut(s) | 1788 |
| Bse3DI | GCAATG | 1 cut(s) | 433 |
| Bse8I | GATNNNNATC | 1 cut(s) | 147 |
| BseBI | CCWGG | 7 cut(s) | 127, 626, 1061, 1337, 1354, 1364, 1542 |
| BseDI | CCNNGG | 8 cut(s) | 80, 126, 625, 800, 1059, 1362, 1363, 1377 |
| BseGI | GGATG | 4 cut(s) | 136, 937, 1303, 1349 |
| BseJI | GATNNNNATC | 1 cut(s) | 147 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 447, 1066, 1230, 1342, 1547, 1855 |
| BseMI | GCAATG | 1 cut(s) | 433 |
| BseMII | CTCAG | 7 cut(s) | 650, 1059, 1194, 1386, 1557, 1802, 1811 |
| BseNI | ACTGG | 4 cut(s) | 669, 1235, 1596, 1703 |
| BseRI | GAGGAG | 7 cut(s) | 453, 857, 1079, 1082, 1282, 1560, 1563 |
| BseYI | CCCAGC | 2 cut(s) | 53, 1472 |
| BsgI | GTGCAG | 3 cut(s) | 741, 1695, 1718 |
| Bsh1236I | CGCG | 1 cut(s) | 480 |
| BshFI | GGCC | 5 cut(s) | 288, 1110, 1234, 1382, 1540 |
| BshNI | GGYRCC | 1 cut(s) | 1845 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1702 |
| BsiHKCI | CYCGRG | 1 cut(s) | 177 |
| BsiSI | CCGG | 1 cut(s) | 949 |
| BslFI | GGGAC | 3 cut(s) | 611, 1729, 1871 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 447, 1066, 1230, 1342, 1547, 1855 |
| BsmAI | GTCTC | 3 cut(s) | 449, 480, 1048 |
| BsmFI | GGGAC | 3 cut(s) | 611, 1729, 1871 |
| BsmI | GAATGC | 2 cut(s) | 688, 1119 |
| BsnI | GGCC | 5 cut(s) | 288, 1110, 1234, 1382, 1540 |
| Bso31I | GGTCTC | 1 cut(s) | 1048 |
| BsoBI | CYCGRG | 1 cut(s) | 177 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1702 |
| BspACI | CCGC | 2 cut(s) | 480, 1855 |
| BspANI | GGCC | 5 cut(s) | 288, 1110, 1234, 1382, 1540 |
| BspCNI | CTCAG | 7 cut(s) | 651, 1058, 1193, 1387, 1558, 1801, 1810 |
| BspFNI | CGCG | 1 cut(s) | 480 |
| BspLI | GGNNCC | 5 cut(s) | 100, 831, 1334, 1764, 1847 |
| BspMAI | CTGCAG | 3 cut(s) | 1209, 1588, 1669 |
| BspMI | ACCTGC | 2 cut(s) | 1577, 1755 |
| BspPI | GGATC | 1 cut(s) | 1484 |
| BspT107I | GGYRCC | 1 cut(s) | 1845 |
| BspTNI | GGTCTC | 1 cut(s) | 1048 |
| BsrDI | GCAATG | 1 cut(s) | 433 |
| BsrFI | RCCGGY | 1 cut(s) | 948 |
| BsrI | ACTGG | 4 cut(s) | 669, 1235, 1596, 1703 |
| BssAI | RCCGGY | 1 cut(s) | 948 |
| BssECI | CCNNGG | 8 cut(s) | 80, 126, 625, 800, 1059, 1362, 1363, 1377 |
| BssT1I | CCWWGG | 3 cut(s) | 80, 800, 1377 |
| Bst2UI | CCWGG | 7 cut(s) | 127, 626, 1061, 1337, 1354, 1364, 1542 |
| Bst4CI | ACNGT | 7 cut(s) | 269, 701, 1080, 1192, 1576, 1840, 1887 |
| Bst6I | CTCTTC | 3 cut(s) | 188, 471, 1906 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 719, 1204, 1673 |
| BstC8I | GCNNGC | 4 cut(s) | 163, 327, 1108, 1875 |
| BstDEI | CTNAG | 8 cut(s) | 10, 659, 1045, 1180, 1395, 1566, 1788, 1797 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1228, 1545 |
| BstF5I | GGATG | 4 cut(s) | 136, 937, 1303, 1349 |
| BstFNI | CGCG | 1 cut(s) | 480 |
| BstH2I | RGCGCY | 2 cut(s) | 1658, 1797 |
| BstHHI | GCGC | 2 cut(s) | 1657, 1796 |
| BstMAI | GTCTC | 3 cut(s) | 449, 480, 1048 |
| BstNI | CCWGG | 7 cut(s) | 127, 626, 1061, 1337, 1354, 1364, 1542 |
| BstNSI | RCATGY | 1 cut(s) | 1877 |
| BstSCI | CCNGG | 7 cut(s) | 125, 624, 1059, 1335, 1352, 1362, 1540 |
| BstSFI | CTRYAG | 4 cut(s) | 904, 1205, 1584, 1665 |
| BstUI | CGCG | 1 cut(s) | 480 |
| BstV2I | GAAGAC | 1 cut(s) | 141 |
| BstX2I | RGATCY | 1 cut(s) | 434 |
| BstYI | RGATCY | 1 cut(s) | 434 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1788 |
| BsuRI | GGCC | 5 cut(s) | 288, 1110, 1234, 1382, 1540 |
| BtgZI | GCGATG | 2 cut(s) | 255, 759 |
| BtrI | CACGTC | 1 cut(s) | 754 |
| BtsCI | GGATG | 4 cut(s) | 136, 937, 1303, 1349 |
| BtsI | GCAGTG | 2 cut(s) | 223, 1012 |
| BtsIMutI | CAGTG | 8 cut(s) | 223, 274, 706, 1012, 1085, 1188, 1710, 1883 |
| BveI | ACCTGC | 2 cut(s) | 1577, 1755 |
| Cac8I | GCNNGC | 4 cut(s) | 163, 327, 1108, 1875 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1052 |
| CfoI | GCGC | 2 cut(s) | 1657, 1796 |
| Cfr10I | RCCGGY | 1 cut(s) | 948 |
| Cfr13I | GGNCC | 3 cut(s) | 287, 896, 1784 |
| CseI | GACGC | 1 cut(s) | 608 |
| Csp6I | GTAC | 4 cut(s) | 485, 630, 955, 1101 |
| CviAII | CATG | 7 cut(s) | 206, 254, 916, 937, 1636, 1810, 1874 |
| CviQI | GTAC | 4 cut(s) | 485, 630, 955, 1101 |
| DdeI | CTNAG | 8 cut(s) | 10, 659, 1045, 1180, 1395, 1566, 1788, 1797 |
| DraI | TTTAAA | 2 cut(s) | 1075, 1429 |
| EaeI | YGGCCR | 1 cut(s) | 1108 |
| Eam1104I | CTCTTC | 3 cut(s) | 188, 471, 1906 |
| EarI | CTCTTC | 3 cut(s) | 188, 471, 1906 |
| Eco130I | CCWWGG | 3 cut(s) | 80, 800, 1377 |
| Eco147I | AGGCCT | 2 cut(s) | 1382, 1540 |
| Eco31I | GGTCTC | 1 cut(s) | 1048 |
| Eco47I | GGWCC | 2 cut(s) | 896, 1784 |
| Eco47III | AGCGCT | 1 cut(s) | 1656 |
| Eco57I | CTGAAG | 4 cut(s) | 209, 581, 1422, 1754 |
| Eco81I | CCTNAGG | 1 cut(s) | 1788 |
| Eco88I | CYCGRG | 1 cut(s) | 177 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1228, 1545 |
| EcoRII | CCWGG | 7 cut(s) | 125, 624, 1059, 1335, 1352, 1362, 1540 |
| EcoT14I | CCWWGG | 3 cut(s) | 80, 800, 1377 |
| EcoT22I | ATGCAT | 1 cut(s) | 535 |
| ErhI | CCWWGG | 3 cut(s) | 80, 800, 1377 |
| FaeI | CATG | 7 cut(s) | 209, 257, 919, 940, 1639, 1813, 1877 |
| FaqI | GGGAC | 3 cut(s) | 611, 1729, 1871 |
| FatI | CATG | 7 cut(s) | 205, 253, 915, 936, 1635, 1809, 1873 |
| FauI | CCCGC | 1 cut(s) | 1848 |
| FauNDI | CATATG | 1 cut(s) | 1171 |
| FblI | GTMKAC | 1 cut(s) | 903 |
| FokI | GGATG | 4 cut(s) | 143, 944, 1310, 1336 |
| FspBI | CTAG | 5 cut(s) | 81, 498, 962, 1512, 1927 |
| GlaI | GCGC | 2 cut(s) | 1656, 1795 |
| GsaI | CCCAGC | 2 cut(s) | 57, 1476 |
| GsuI | CTGGAG | 5 cut(s) | 109, 652, 1319, 1563, 1686 |
| HaeII | RGCGCY | 2 cut(s) | 1658, 1797 |
| HaeIII | GGCC | 5 cut(s) | 288, 1110, 1234, 1382, 1540 |
| HapII | CCGG | 1 cut(s) | 949 |
| HgaI | GACGC | 1 cut(s) | 608 |
| HhaI | GCGC | 2 cut(s) | 1657, 1796 |
| Hin1II | CATG | 7 cut(s) | 209, 257, 919, 940, 1639, 1813, 1877 |
| Hin6I | GCGC | 2 cut(s) | 1655, 1794 |
| HinP1I | GCGC | 2 cut(s) | 1655, 1794 |
| HincII | GTYRAC | 1 cut(s) | 1894 |
| HindII | GTYRAC | 1 cut(s) | 1894 |
| HindIII | AAGCTT | 1 cut(s) | 1775 |
| HpaI | GTTAAC | 1 cut(s) | 1894 |
| HpaII | CCGG | 1 cut(s) | 949 |
| HphI | GGTGA | 4 cut(s) | 575, 627, 740, 1565 |
| Hpy166II | GTNNAC | 7 cut(s) | 341, 485, 904, 1177, 1708, 1784, 1894 |
| Hpy188III | TCNNGA | 8 cut(s) | 177, 643, 776, 944, 1324, 1440, 1500, 1518 |
| Hpy8I | GTNNAC | 7 cut(s) | 341, 485, 904, 1177, 1708, 1784, 1894 |
| Hpy99I | CGWCG | 1 cut(s) | 1865 |
| HpyAV | CCTTC | 2 cut(s) | 611, 1249 |
| HpyCH4III | ACNGT | 7 cut(s) | 269, 701, 1080, 1192, 1576, 1840, 1887 |
| HpyCH4IV | ACGT | 3 cut(s) | 91, 556, 753 |
| HpyF3I | CTNAG | 8 cut(s) | 10, 659, 1045, 1180, 1395, 1566, 1788, 1797 |
| HpySE526I | ACGT | 3 cut(s) | 91, 556, 753 |
| Hsp92II | CATG | 7 cut(s) | 209, 257, 919, 940, 1639, 1813, 1877 |
| HspAI | GCGC | 2 cut(s) | 1655, 1794 |
| KspAI | GTTAAC | 1 cut(s) | 1894 |
| LmnI | GCTCC | 6 cut(s) | 27, 213, 1060, 1338, 1705, 1768 |
| LweI | GCATC | 5 cut(s) | 520, 722, 922, 1140, 1358 |
| MaeI | CTAG | 5 cut(s) | 81, 498, 962, 1512, 1927 |
| MaeII | ACGT | 3 cut(s) | 91, 556, 753 |
| MaeIII | GTNAC | 5 cut(s) | 119, 662, 693, 973, 1598 |
| MflI | RGATCY | 1 cut(s) | 434 |
| MhlI | GDGCHC | 1 cut(s) | 1702 |
| MlyI | GAGTC | 6 cut(s) | 116, 131, 269, 566, 664, 1730 |
| MmeI | TCCRAC | 3 cut(s) | 853, 1257, 1558 |
| Mph1103I | ATGCAT | 1 cut(s) | 535 |
| MroXI | GAANNNNTTC | 1 cut(s) | 46 |
| MseI | TTAA | 6 cut(s) | 605, 848, 1074, 1086, 1428, 1893 |
| MslI | CAYNNNNRTG | 1 cut(s) | 258 |
| MspA1I | CMGCKG | 3 cut(s) | 53, 518, 1670 |
| MspI | CCGG | 1 cut(s) | 949 |
| MspR9I | CCNGG | 7 cut(s) | 127, 626, 1061, 1337, 1354, 1364, 1542 |
| MssI | GTTTAAAC | 1 cut(s) | 1075 |
| Mva1269I | GAATGC | 2 cut(s) | 688, 1119 |
| MvaI | CCWGG | 7 cut(s) | 127, 626, 1061, 1337, 1354, 1364, 1542 |
| MvnI | CGCG | 1 cut(s) | 480 |
| NdeI | CATATG | 1 cut(s) | 1171 |
| NlaIII | CATG | 7 cut(s) | 209, 257, 919, 940, 1639, 1813, 1877 |
| NlaIV | GGNNCC | 5 cut(s) | 100, 831, 1334, 1764, 1847 |
| NmuCI | GTSAC | 2 cut(s) | 119, 973 |
| NsiI | ATGCAT | 1 cut(s) | 535 |
| NspI | RCATGY | 1 cut(s) | 1877 |
| PaeI | GCATGC | 1 cut(s) | 1877 |
| PaeR7I | CTCGAG | 1 cut(s) | 177 |
| PaqCI | CACCTGC | 1 cut(s) | 1577 |
| PasI | CCCWGGG | 1 cut(s) | 1363 |
| PceI | AGGCCT | 2 cut(s) | 1382, 1540 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 553 |
| PctI | GAATGC | 2 cut(s) | 688, 1119 |
| PdmI | GAANNNNTTC | 1 cut(s) | 46 |
| PfeI | GAWTC | 4 cut(s) | 538, 940, 1049, 1462 |
| PflFI | GACNNNGTC | 2 cut(s) | 1720, 1885 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1342 |
| PfoI | TCCNGGA | 1 cut(s) | 1335 |
| PleI | GAGTC | 6 cut(s) | 116, 131, 269, 566, 663, 1729 |
| PmeI | GTTTAAAC | 1 cut(s) | 1075 |
| PpsI | GAGTC | 6 cut(s) | 116, 131, 269, 566, 663, 1729 |
| Psp6I | CCWGG | 7 cut(s) | 125, 624, 1059, 1335, 1352, 1362, 1540 |
| PspFI | CCCAGC | 2 cut(s) | 53, 1472 |
| PspGI | CCWGG | 7 cut(s) | 125, 624, 1059, 1335, 1352, 1362, 1540 |
| PspN4I | GGNNCC | 5 cut(s) | 100, 831, 1334, 1764, 1847 |
| PspPI | GGNCC | 3 cut(s) | 287, 896, 1784 |
| PstI | CTGCAG | 3 cut(s) | 1209, 1588, 1669 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1052 |
| PsuI | RGATCY | 1 cut(s) | 434 |
| PsyI | GACNNNGTC | 2 cut(s) | 1720, 1885 |
| PvuII | CAGCTG | 3 cut(s) | 53, 518, 1670 |
| RsaI | GTAC | 4 cut(s) | 486, 631, 956, 1102 |
| RsaNI | GTAC | 4 cut(s) | 485, 630, 955, 1101 |
| RseI | CAYNNNNRTG | 1 cut(s) | 258 |
| SaqAI | TTAA | 6 cut(s) | 605, 848, 1074, 1086, 1428, 1893 |
| Sau96I | GGNCC | 3 cut(s) | 287, 896, 1784 |
| SchI | GAGTC | 6 cut(s) | 116, 131, 269, 566, 664, 1730 |
| ScrFI | CCNGG | 7 cut(s) | 127, 626, 1061, 1337, 1354, 1364, 1542 |
| SduI | GDGCHC | 1 cut(s) | 1702 |
| SfaNI | GCATC | 5 cut(s) | 520, 722, 922, 1140, 1358 |
| SfcI | CTRYAG | 4 cut(s) | 904, 1205, 1584, 1665 |
| Sfr274I | CTCGAG | 1 cut(s) | 177 |
| SinI | GGWCC | 2 cut(s) | 896, 1784 |
| SlaI | CTCGAG | 1 cut(s) | 177 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 258 |
| SmlI | CTYRAG | 3 cut(s) | 26, 177, 1498 |
| SmoI | CTYRAG | 3 cut(s) | 26, 177, 1498 |
| SphI | GCATGC | 1 cut(s) | 1877 |
| SseBI | AGGCCT | 2 cut(s) | 1382, 1540 |
| SsiI | CCGC | 2 cut(s) | 480, 1855 |
| SspI | AATATT | 2 cut(s) | 986, 1243 |
| SspMI | CTAG | 5 cut(s) | 81, 498, 962, 1512, 1927 |
| StuI | AGGCCT | 2 cut(s) | 1382, 1540 |
| StyD4I | CCNGG | 7 cut(s) | 125, 624, 1059, 1335, 1352, 1362, 1540 |
| StyI | CCWWGG | 3 cut(s) | 80, 800, 1377 |
| TaaI | ACNGT | 7 cut(s) | 269, 701, 1080, 1192, 1576, 1840, 1887 |
| TaiI | ACGT | 3 cut(s) | 94, 559, 756 |
| TaqI | TCGA | 6 cut(s) | 178, 370, 1163, 1517, 1743, 1880 |
| TaqII | GACCGA | 1 cut(s) | 330 |
| TatI | WGTACW | 1 cut(s) | 954 |
| TfiI | GAWTC | 4 cut(s) | 538, 940, 1049, 1462 |
| Tru1I | TTAA | 6 cut(s) | 605, 848, 1074, 1086, 1428, 1893 |
| Tru9I | TTAA | 6 cut(s) | 605, 848, 1074, 1086, 1428, 1893 |
| TscAI | CASTG | 8 cut(s) | 223, 274, 706, 1012, 1085, 1195, 1710, 1890 |
| TseFI | GTSAC | 2 cut(s) | 119, 973 |
| Tsp45I | GTSAC | 2 cut(s) | 119, 973 |
| TspDTI | ATGAA | 9 cut(s) | 147, 222, 237, 321, 723, 953, 1415, 1475, 1572 |
| TspGWI | ACGGA | 1 cut(s) | 129 |
| TspRI | CASTG | 8 cut(s) | 223, 274, 706, 1012, 1085, 1195, 1710, 1890 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1720, 1885 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1342 |
| VpaK11BI | GGWCC | 2 cut(s) | 896, 1784 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1228, 1545 |
| XapI | RAATTY | 2 cut(s) | 16, 1423 |
| XceI | RCATGY | 1 cut(s) | 1877 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1030 |
| XhoI | CTCGAG | 1 cut(s) | 177 |
| XmaJI | CCTAGG | 1 cut(s) | 80 |
| XmiI | GTMKAC | 1 cut(s) | 903 |
| XmnI | GAANNNNTTC | 1 cut(s) | 46 |
| XspI | CTAG | 5 cut(s) | 81, 498, 962, 1512, 1927 |
| Zsp2I | ATGCAT | 1 cut(s) | 535 |