Prupe.3G050300_v2.0.a1

RNA polymerase-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0003596
Physical Location & Seq
Reverse (-)
3559117 .. 3561158
2042 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G050300.1

Sequence Viewer

Length: 1971 bp
ATGGCAGACTTAGAAAATTTGCTCTTGGAGGCTGCAGGAAGAACAAGTTCAGCAGGGAAAAGCCGACATTCACATTCATCATCTAGGAGGAGGCGCGGGGGTTCATATTCTGATGGAGGAAGTGACTCCAGGGGTGATGACTCGGATGATGGTCGTGGCTATGCAAGCAGGAAGCCCTCTGGAACTCAAGTTCCTTTGAAGAAGAGGCTGGACCCTACAGAAATGGATGATGAACAGGGCAGCCAGGAAGAAGGTGATTATAACGATAGTGGGTCTGATCGTGGAGGTGACAGCAATGAATCTGATGTTGGCAGTGATCTTTACAAGGATGAAGATGACAGGCGAAAGCTTGCTGAAATGTCTGAACTGCAAAGAGAGCTAATTCTGTCTGATAGAGCACAGAAGAAAGATGACAAGAGTTTAAAGGAGAAATTCAGGCCAAAGTGGGATAAAGGGAAGACCACACATTCCAGGAAAGAGACTCCACCTCTTCCATCCTCTCGAGTGCGTTCATCAGCCAGATCTGCTGACAGGGCAGCTGCCAAGGATGACGCATTGAATGAGTTACGAGCAAAACGTTTGAAGCAGCAGGACCCTGAGGCTCACCGCAAATTGAGAGATGCTTCTCGAGGAAGTTCAGGCAGTCGAAGTTTCTCACACATGACCAGGAAATCCTTCACTGCAGTGGGTCGTAGTAGCTCTAGTCAGAGTGACAGTGACAGTCGGTCACATAGTGAAGATGATGGATCGACAGGGGAAGATCCAATGATGGACAGTGATGATGAAAGGTCAGAGGGACTAACGTTTGATGATATAAAGGAAATTACCATTCGAAGGTCAAAACTTGCAAAGTGGTTAATGGAGCCATTCTTTGAAGAGTTAATTGTGGGTTGCTTTGTGAGGGTTGGAATTGGGAGGTCAAAGTCTGGGCCTATCTATAGGCTCTGCATGGTCCGGAATGTTGACGCTTCAGATCCTGATCGGAAGTACAAACTAGAGAATAAAACCACACACAAGTATCTGAATGTTGTTTGGGGCAATGAGAACTCTGCTGCCAGGTGGCAGATGGCTATGATTTCAGACTCTGCACCTCTGGAGGAGGAGTTTAAACAGTGGGTTAGAGAGGTGGAGAGAAGTGGTGGCCGGTTGCCGAGCAAACAGGATGTGCTAGAAAAGAAGGAGGCCATAAAAAAAATCAATACATTTGTCTACTCAGCCGCAACTGTGAAGCAGATGATAGAGGAGAAAAAATCTGCTTCATCAAGGCCATTAAACATCGCGCTTGAGAAGGACCGGTTGAGGAGGGAGTTGGAAGTTGCACAAAGTAAGCATGATGATGCAGAAGTGGAGAGGATCAAGACAAGATTGCAGCAATTAGAAGCACGACGGCAATCACAGGGGAAAGATAGCAAGGCTGTTAGGCTTGCTGAGATGAACAGAAAGAACAGGGTTGAAAATTTCAAGAATGCATCAGAATTAAAACCTGTGAAGACGGGTTTGAAAGCGGGGGAGGCCGGTTATGATCCATTTTCAAGGAGATGGACTAGGTCAAGGAATTACTATGTGTCAAAGCCTGGTGAACAAAAAGGGGAGGCAGAAGCAATTGTCGATGCTGATGGTGCCTTGGCAGATATAGAAAGTAATGGAACAGCAGTGGTAGGAGCAGTACGGGCTGGCATGGCAGCTACTGCAGCGGCTTTGGAAGCTGCAGCTGGTGCAGGGAAGTTGATTGATACGAGTGCTCCTGTTGATTTTGGAACAGAGTCAAATCTAATGCACAATTTTGAGCTGCCCATATCATTGGCTACTCTTCAGAAGTTTGGTGGGCCACAAGGAGCTCAGGAAGGATTCCTGGCCAGAAAACAGAGAATAGAAGCAACAGTTGGGTGCCGAGTCCCAGAGAATGATGGGAGGAGGCATGCGCTGACACTTACAGTTAGCGACTACAAGAGAAGAATGGGGCTACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000428 GO:0000988 GO:0000989 GO:0000993 GO:0001076 GO:0001098 GO:0001099 GO:0001701 GO:0001704 GO:0001706 GO:0001711 GO:0001824 GO:0001832 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007369 GO:0007492 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009790 GO:0009792 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019827 GO:0019899 GO:0030154 GO:0030880 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0034243 GO:0034968 GO:0035987 GO:0036211 GO:0040007 GO:0043009 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045165 GO:0045309 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048589 GO:0048598 GO:0048646 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050815 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051219 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0055029 GO:0060255 GO:0060795 GO:0061695 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:0097159 GO:0098727 GO:0099122 GO:0140110 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905269 GO:1990234 GO:1990269 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3

Protein Analysis

657

Amino Acids

72.91

Weight (kDa)

9.04

Isoelectric Point (pI)

57.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 261
AccB1I GGYRCC 2 cut(s) 1619, 1887
AccI GTMKAC 1 cut(s) 1209
AccII CGCG 2 cut(s) 96, 1280
AccIII TCCGGA 1 cut(s) 954
AciI CCGC 5 cut(s) 96, 607, 1218, 1505, 1694
AclI AACGTT 2 cut(s) 577, 803
AclWI GGATC 5 cut(s) 754, 755, 968, 1361, 1517
AcoI YGGCCR 2 cut(s) 1141, 1854
AcsI RAATTY 3 cut(s) 16, 431, 1456
AcuI CTGAAG 2 cut(s) 954, 1796
AdeI CACNNNGTG 1 cut(s) 734
AfaI GTAC 2 cut(s) 989, 1668
AfiI CCNNNNNNNGG 1 cut(s) 834
AgeI ACCGGT 1 cut(s) 1293
AgsI TTSAA 8 cut(s) 199, 559, 583, 875, 1454, 1462, 1501, 1533
AhdI GACNNNNNGTC 1 cut(s) 724
AjnI CCWGG 7 cut(s) 128, 243, 470, 665, 1055, 1573, 1851
AjuI GAANNNNNNNTTGG 4 cut(s) 291, 323, 1866, 1898
AleI CACNNNNGTG 1 cut(s) 683
AloI GAACNNNNNNTCC 4 cut(s) 174, 175, 206, 207
AluBI AGCT 9 cut(s) 349, 379, 539, 699, 1685, 1706, 1712, 1789, 1838
AluI AGCT 9 cut(s) 349, 379, 539, 699, 1685, 1706, 1712, 1789, 1838
Alw21I GWGCWC 3 cut(s) 400, 1744, 1840
Alw26I GTCTC 1 cut(s) 473
AlwI GGATC 5 cut(s) 754, 755, 968, 1361, 1517
AlwNI CAGNNNCTG 3 cut(s) 977, 1085, 1688
Ama87I CYCGRG 2 cut(s) 501, 627
Aor13HI TCCGGA 1 cut(s) 954
AoxI GGCC 8 cut(s) 437, 929, 1141, 1182, 1265, 1512, 1826, 1854
ApoI RAATTY 3 cut(s) 16, 431, 1456
AsiGI ACCGGT 1 cut(s) 1293
Asp700I GAANNNNTTC 2 cut(s) 46, 674
AspLEI GCGC 3 cut(s) 96, 1282, 1924
AspS9I GGNCC 6 cut(s) 211, 592, 929, 952, 1291, 1826
AsuHPI GGTGA 5 cut(s) 146, 266, 299, 596, 1589
AsuII TTCGAA 1 cut(s) 832
AvaI CYCGRG 2 cut(s) 501, 627
AvaII GGWCC 4 cut(s) 211, 592, 952, 1291
AxyI CCTNAGG 1 cut(s) 597
BaeI ACNNNNGTAYC 2 cut(s) 1001, 1034
BalI TGGCCA 1 cut(s) 1856
BanI GGYRCC 2 cut(s) 1619, 1887
BanII GRGCYC 1 cut(s) 1840
BbsI GAAGAC 2 cut(s) 464, 1496
Bbv12I GWGCWC 3 cut(s) 400, 1744, 1840
BccI CCATC 9 cut(s) 107, 143, 502, 737, 763, 1060, 1533, 1610, 1901
BceAI ACGGC 1 cut(s) 1403
BciT130I CCWGG 7 cut(s) 130, 245, 472, 667, 1057, 1575, 1853
BcoDI GTCTC 1 cut(s) 473
BfaI CTAG 5 cut(s) 84, 702, 995, 1169, 1545
BfmI CTRYAG 6 cut(s) 33, 216, 681, 937, 1689, 1707
BglII AGATCT 1 cut(s) 521
Bme1390I CCNGG 7 cut(s) 130, 245, 472, 667, 1057, 1575, 1853
Bme18I GGWCC 4 cut(s) 211, 592, 952, 1291
BmeRI GACNNNNNGTC 1 cut(s) 724
BmeT110I CYCGRG 2 cut(s) 501, 627
BmgT120I GGNCC 6 cut(s) 211, 592, 929, 952, 1291, 1826
BmiI GGNNCC 5 cut(s) 213, 594, 864, 1621, 1889
BmrFI CCNGG 7 cut(s) 130, 245, 472, 667, 1057, 1575, 1853
BmsI GCATC 4 cut(s) 610, 1327, 1478, 1600
BpiI GAAGAC 2 cut(s) 464, 1496
BpmI CTGGAG 2 cut(s) 112, 1115
Bpu10I CCTNAGC 1 cut(s) 1839
Bpu14I TTCGAA 1 cut(s) 832
BpuEI CTTGAG 2 cut(s) 171, 1304
BsaBI GATNNNNATC 1 cut(s) 978
BsaJI CCNNGG 3 cut(s) 129, 543, 1623
BsaWI WCCGGW 2 cut(s) 954, 1293
BsaXI ACNNNNNCTCC 4 cut(s) 1088, 1118, 1726, 1756
Bsc4I CCNNNNNNNGG 1 cut(s) 834
Bse118I RCCGGY 3 cut(s) 1143, 1293, 1514
Bse21I CCTNAGG 1 cut(s) 597
Bse3DI GCAATG 2 cut(s) 301, 1045
Bse8I GATNNNNATC 1 cut(s) 978
BseAI TCCGGA 1 cut(s) 954
BseBI CCWGG 7 cut(s) 130, 245, 472, 667, 1057, 1575, 1853
BseDI CCNNGG 3 cut(s) 129, 543, 1623
BseGI GGATG 6 cut(s) 151, 232, 334, 494, 553, 1168
BseJI GATNNNNATC 1 cut(s) 978
BseLI CCNNNNNNNGG 1 cut(s) 834
BseMI GCAATG 2 cut(s) 301, 1045
BseMII CTCAG 4 cut(s) 588, 1227, 1419, 1853
BseRI GAGGAG 6 cut(s) 103, 1112, 1115, 1256, 1315, 1927
BsgI GTGCAG 2 cut(s) 1071, 1737
Bsh1236I CGCG 2 cut(s) 96, 1280
BshFI GGCC 8 cut(s) 439, 931, 1143, 1184, 1267, 1514, 1828, 1856
BshNI GGYRCC 2 cut(s) 1619, 1887
BshTI ACCGGT 1 cut(s) 1293
BsiHKAI GWGCWC 3 cut(s) 400, 1744, 1840
BsiHKCI CYCGRG 2 cut(s) 501, 627
BsiSI CCGG 4 cut(s) 955, 1144, 1294, 1515
BslFI GGGAC 2 cut(s) 810, 1880
BslI CCNNNNNNNGG 1 cut(s) 834
BsmAI GTCTC 1 cut(s) 473
BsmFI GGGAC 2 cut(s) 810, 1880
BsmI GAATGC 1 cut(s) 1471
BsnI GGCC 8 cut(s) 439, 931, 1143, 1184, 1267, 1514, 1828, 1856
BsoBI CYCGRG 2 cut(s) 501, 627
Bsp119I TTCGAA 1 cut(s) 832
Bsp1286I GDGCHC 3 cut(s) 400, 1744, 1840
Bsp13I TCCGGA 1 cut(s) 954
Bsp143I GATC 9 cut(s) 277, 316, 521, 746, 760, 973, 979, 1353, 1522
BspACI CCGC 5 cut(s) 96, 607, 1218, 1505, 1694
BspANI GGCC 8 cut(s) 439, 931, 1143, 1184, 1267, 1514, 1828, 1856
BspCNI CTCAG 4 cut(s) 589, 1226, 1420, 1852
BspEI TCCGGA 1 cut(s) 954
BspFNI CGCG 2 cut(s) 96, 1280
BspLI GGNNCC 5 cut(s) 213, 594, 864, 1621, 1889
BspMAI CTGCAG 4 cut(s) 37, 685, 1693, 1711
BspPI GGATC 5 cut(s) 754, 755, 968, 1361, 1517
BspT104I TTCGAA 1 cut(s) 832
BspT107I GGYRCC 2 cut(s) 1619, 1887
BsrDI GCAATG 2 cut(s) 301, 1045
BsrFI RCCGGY 3 cut(s) 1143, 1293, 1514
BssAI RCCGGY 3 cut(s) 1143, 1293, 1514
BssECI CCNNGG 3 cut(s) 129, 543, 1623
BssMI GATC 9 cut(s) 277, 316, 521, 746, 760, 973, 979, 1353, 1522
BssT1I CCWWGG 2 cut(s) 543, 1623
Bst2UI CCWGG 7 cut(s) 130, 245, 472, 667, 1057, 1575, 1853
Bst4CI ACNGT 7 cut(s) 716, 722, 776, 1113, 1225, 1882, 1936
Bst6I CTCTTC 4 cut(s) 197, 495, 870, 1815
BstAPI GCANNNNNTGC 2 cut(s) 1688, 1715
BstBI TTCGAA 1 cut(s) 832
BstC8I GCNNGC 5 cut(s) 166, 351, 1425, 1675, 1920
BstDEI CTNAG 5 cut(s) 10, 597, 1213, 1428, 1839
BstF5I GGATG 6 cut(s) 151, 232, 334, 494, 553, 1168
BstFNI CGCG 2 cut(s) 96, 1280
BstHHI GCGC 3 cut(s) 96, 1282, 1924
BstKTI GATC 9 cut(s) 280, 319, 524, 749, 763, 976, 982, 1356, 1525
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 9 cut(s) 277, 316, 521, 746, 760, 973, 979, 1353, 1522
BstNI CCWGG 7 cut(s) 130, 245, 472, 667, 1057, 1575, 1853
BstNSI RCATGY 1 cut(s) 1922
BstSCI CCNGG 7 cut(s) 128, 243, 470, 665, 1055, 1573, 1851
BstSFI CTRYAG 6 cut(s) 33, 216, 681, 937, 1689, 1707
BstUI CGCG 2 cut(s) 96, 1280
BstV2I GAAGAC 2 cut(s) 464, 1496
BstX2I RGATCY 3 cut(s) 521, 760, 973
BstXI CCANNNNNNTGG 1 cut(s) 1801
BstYI RGATCY 3 cut(s) 521, 760, 973
Bsu36I CCTNAGG 1 cut(s) 597
BsuRI GGCC 8 cut(s) 439, 931, 1143, 1184, 1267, 1514, 1828, 1856
BtgZI GCGATG 1 cut(s) 1261
BtsCI GGATG 6 cut(s) 151, 232, 334, 494, 553, 1168
BtsI GCAGTG 4 cut(s) 319, 678, 690, 1659
BtsIMutI CAGTG 7 cut(s) 319, 678, 690, 721, 781, 1118, 1659
Cac8I GCNNGC 5 cut(s) 166, 351, 1425, 1675, 1920
CaiI CAGNNNCTG 3 cut(s) 977, 1085, 1688
CfoI GCGC 3 cut(s) 96, 1282, 1924
Cfr10I RCCGGY 3 cut(s) 1143, 1293, 1514
Cfr13I GGNCC 6 cut(s) 211, 592, 929, 952, 1291, 1826
CseI GACGC 2 cut(s) 560, 974
Csp6I GTAC 2 cut(s) 988, 1667
CspAI ACCGGT 1 cut(s) 1293
CviAII CATG 5 cut(s) 661, 949, 1331, 1678, 1919
CviQI GTAC 2 cut(s) 988, 1667
DdeI CTNAG 5 cut(s) 10, 597, 1213, 1428, 1839
DpnI GATC 9 cut(s) 279, 318, 523, 748, 762, 975, 981, 1355, 1524
DpnII GATC 9 cut(s) 277, 316, 521, 746, 760, 973, 979, 1353, 1522
DraI TTTAAA 2 cut(s) 423, 1108
DraIII CACNNNGTG 1 cut(s) 734
DriI GACNNNNNGTC 1 cut(s) 724
EaeI YGGCCR 2 cut(s) 1141, 1854
Eam1104I CTCTTC 4 cut(s) 197, 495, 870, 1815
Eam1105I GACNNNNNGTC 1 cut(s) 724
EarI CTCTTC 4 cut(s) 197, 495, 870, 1815
Ecl136II GAGCTC 1 cut(s) 1838
Eco130I CCWWGG 2 cut(s) 543, 1623
Eco24I GRGCYC 1 cut(s) 1840
Eco47I GGWCC 4 cut(s) 211, 592, 952, 1291
Eco53kI GAGCTC 1 cut(s) 1838
Eco57I CTGAAG 2 cut(s) 954, 1796
Eco81I CCTNAGG 1 cut(s) 597
Eco88I CYCGRG 2 cut(s) 501, 627
EcoICRI GAGCTC 1 cut(s) 1838
EcoO109I RGGNCCY 1 cut(s) 592
EcoRII CCWGG 7 cut(s) 128, 243, 470, 665, 1055, 1573, 1851
EcoT14I CCWWGG 2 cut(s) 543, 1623
EcoT22I ATGCAT 1 cut(s) 1471
EcoT38I GRGCYC 1 cut(s) 1840
ErhI CCWWGG 2 cut(s) 543, 1623
FaeI CATG 5 cut(s) 664, 952, 1334, 1681, 1922
FaqI GGGAC 2 cut(s) 810, 1880
FatI CATG 5 cut(s) 660, 948, 1330, 1677, 1918
FauI CCCGC 2 cut(s) 89, 1498
FblI GTMKAC 1 cut(s) 1209
FokI GGATG 6 cut(s) 158, 239, 341, 481, 560, 1175
FriOI GRGCYC 1 cut(s) 1840
FspBI CTAG 5 cut(s) 84, 702, 995, 1169, 1545
GlaI GCGC 3 cut(s) 95, 1281, 1923
GsuI CTGGAG 2 cut(s) 112, 1115
HaeIII GGCC 8 cut(s) 439, 931, 1143, 1184, 1267, 1514, 1828, 1856
HapII CCGG 4 cut(s) 955, 1144, 1294, 1515
HgaI GACGC 2 cut(s) 560, 974
HhaI GCGC 3 cut(s) 96, 1282, 1924
Hin1II CATG 5 cut(s) 664, 952, 1334, 1681, 1922
Hin6I GCGC 3 cut(s) 94, 1280, 1922
HinP1I GCGC 3 cut(s) 94, 1280, 1922
HincII GTYRAC 1 cut(s) 964
HindII GTYRAC 1 cut(s) 964
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 8 cut(s) 125, 140, 299, 481, 1082, 1763, 1848, 1893
HpaII CCGG 4 cut(s) 955, 1144, 1294, 1515
HphI GGTGA 5 cut(s) 146, 266, 299, 596, 1589
Hpy166II GTNNAC 3 cut(s) 964, 1210, 1580
Hpy188III TCNNGA 9 cut(s) 180, 501, 627, 955, 977, 1094, 1357, 1462, 1841
Hpy8I GTNNAC 3 cut(s) 964, 1210, 1580
Hpy99I CGWCG 1 cut(s) 1389
HpyAV CCTTC 6 cut(s) 245, 685, 828, 1171, 1282, 1838
HpyCH4III ACNGT 7 cut(s) 716, 722, 776, 1113, 1225, 1882, 1936
HpyCH4IV ACGT 2 cut(s) 577, 803
HpyF3I CTNAG 5 cut(s) 10, 597, 1213, 1428, 1839
HpySE526I ACGT 2 cut(s) 577, 803
Hsp92II CATG 5 cut(s) 664, 952, 1334, 1681, 1922
HspAI GCGC 3 cut(s) 94, 1280, 1922
Kpn2I TCCGGA 1 cut(s) 954
Kzo9I GATC 9 cut(s) 277, 316, 521, 746, 760, 973, 979, 1353, 1522
LmnI GCTCC 4 cut(s) 862, 1661, 1747, 1835
LweI GCATC 4 cut(s) 610, 1327, 1478, 1600
MaeI CTAG 5 cut(s) 84, 702, 995, 1169, 1545
MaeII ACGT 2 cut(s) 577, 803
MaeIII GTNAC 6 cut(s) 122, 287, 564, 710, 716, 726
MalI GATC 9 cut(s) 279, 318, 523, 748, 762, 975, 981, 1355, 1524
MboI GATC 9 cut(s) 277, 316, 521, 746, 760, 973, 979, 1353, 1522
MfeI CAATTG 1 cut(s) 1602
MflI RGATCY 3 cut(s) 521, 760, 973
MhlI GDGCHC 3 cut(s) 400, 1744, 1840
MlsI TGGCCA 1 cut(s) 1856
MluNI TGGCCA 1 cut(s) 1856
MlyI GAGTC 6 cut(s) 119, 134, 475, 1076, 1772, 1902
MmeI TCCRAC 2 cut(s) 886, 1290
Mox20I TGGCCA 1 cut(s) 1856
Mph1103I ATGCAT 1 cut(s) 1471
MroI TCCGGA 1 cut(s) 954
MroXI GAANNNNTTC 2 cut(s) 46, 674
MscI TGGCCA 1 cut(s) 1856
MseI TTAA 6 cut(s) 422, 857, 881, 1107, 1271, 1478
MslI CAYNNNNRTG 2 cut(s) 683, 1335
Msp20I TGGCCA 1 cut(s) 1856
MspA1I CMGCKG 3 cut(s) 539, 1694, 1712
MspI CCGG 4 cut(s) 955, 1144, 1294, 1515
MspR9I CCNGG 7 cut(s) 130, 245, 472, 667, 1057, 1575, 1853
MssI GTTTAAAC 1 cut(s) 1108
MunI CAATTG 1 cut(s) 1602
Mva1269I GAATGC 1 cut(s) 1471
MvaI CCWGG 7 cut(s) 130, 245, 472, 667, 1057, 1575, 1853
MvnI CGCG 2 cut(s) 96, 1280
NdeII GATC 9 cut(s) 277, 316, 521, 746, 760, 973, 979, 1353, 1522
NlaIII CATG 5 cut(s) 664, 952, 1334, 1681, 1922
NlaIV GGNNCC 5 cut(s) 213, 594, 864, 1621, 1889
NmeAIII GCCGAG 2 cut(s) 1176, 1916
NmuCI GTSAC 5 cut(s) 122, 287, 710, 716, 726
NsiI ATGCAT 1 cut(s) 1471
NspI RCATGY 1 cut(s) 1922
NspV TTCGAA 1 cut(s) 832
OliI CACNNNNGTG 1 cut(s) 683
PaeI GCATGC 1 cut(s) 1922
PaeR7I CTCGAG 2 cut(s) 501, 627
PcsI WCGNNNNNNNCGW 1 cut(s) 574
PctI GAATGC 1 cut(s) 1471
PdmI GAANNNNTTC 2 cut(s) 46, 674
PfeI GAWTC 2 cut(s) 299, 1848
PflFI GACNNNGTC 1 cut(s) 1546
PfoI TCCNGGA 1 cut(s) 470
PinAI ACCGGT 1 cut(s) 1293
PleI GAGTC 6 cut(s) 119, 134, 475, 1076, 1771, 1901
PmeI GTTTAAAC 1 cut(s) 1108
PpsI GAGTC 6 cut(s) 119, 134, 475, 1076, 1771, 1901
PpuMI RGGWCCY 1 cut(s) 592
PsiI TTATAA 1 cut(s) 261
Psp124BI GAGCTC 1 cut(s) 1840
Psp1406I AACGTT 2 cut(s) 577, 803
Psp5II RGGWCCY 1 cut(s) 592
Psp6I CCWGG 7 cut(s) 128, 243, 470, 665, 1055, 1573, 1851
PspGI CCWGG 7 cut(s) 128, 243, 470, 665, 1055, 1573, 1851
PspN4I GGNNCC 5 cut(s) 213, 594, 864, 1621, 1889
PspPI GGNCC 6 cut(s) 211, 592, 929, 952, 1291, 1826
PspPPI RGGWCCY 1 cut(s) 592
PstI CTGCAG 4 cut(s) 37, 685, 1693, 1711
PstNI CAGNNNCTG 3 cut(s) 977, 1085, 1688
PsuI RGATCY 3 cut(s) 521, 760, 973
PsyI GACNNNGTC 1 cut(s) 1546
PvuII CAGCTG 2 cut(s) 539, 1712
RsaI GTAC 2 cut(s) 989, 1668
RsaNI GTAC 2 cut(s) 988, 1667
RseI CAYNNNNRTG 2 cut(s) 683, 1335
SacI GAGCTC 1 cut(s) 1840
SaqAI TTAA 6 cut(s) 422, 857, 881, 1107, 1271, 1478
Sau3AI GATC 9 cut(s) 277, 316, 521, 746, 760, 973, 979, 1353, 1522
Sau96I GGNCC 6 cut(s) 211, 592, 929, 952, 1291, 1826
SchI GAGTC 6 cut(s) 119, 134, 475, 1076, 1772, 1902
ScrFI CCNGG 7 cut(s) 130, 245, 472, 667, 1057, 1575, 1853
SduI GDGCHC 3 cut(s) 400, 1744, 1840
SfaNI GCATC 4 cut(s) 610, 1327, 1478, 1600
SfcI CTRYAG 6 cut(s) 33, 216, 681, 937, 1689, 1707
Sfr274I CTCGAG 2 cut(s) 501, 627
SfuI TTCGAA 1 cut(s) 832
SinI GGWCC 4 cut(s) 211, 592, 952, 1291
SlaI CTCGAG 2 cut(s) 501, 627
SmiMI CAYNNNNRTG 2 cut(s) 683, 1335
SmlI CTYRAG 4 cut(s) 186, 501, 627, 1283
SmoI CTYRAG 4 cut(s) 186, 501, 627, 1283
SphI GCATGC 1 cut(s) 1922
SsiI CCGC 5 cut(s) 96, 607, 1218, 1505, 1694
SspMI CTAG 5 cut(s) 84, 702, 995, 1169, 1545
SstI GAGCTC 1 cut(s) 1840
StyD4I CCNGG 7 cut(s) 128, 243, 470, 665, 1055, 1573, 1851
StyI CCWWGG 2 cut(s) 543, 1623
TaaI ACNGT 7 cut(s) 716, 722, 776, 1113, 1225, 1882, 1936
TaiI ACGT 2 cut(s) 580, 806
TaqI TCGA 6 cut(s) 502, 628, 646, 749, 832, 1608
TaqII GACCGA 1 cut(s) 714
TatI WGTACW 1 cut(s) 987
TauI GCSGC 2 cut(s) 1220, 1697
TfiI GAWTC 2 cut(s) 299, 1848
Tru1I TTAA 6 cut(s) 422, 857, 881, 1107, 1271, 1478
Tru9I TTAA 6 cut(s) 422, 857, 881, 1107, 1271, 1478
TscAI CASTG 7 cut(s) 319, 685, 690, 721, 781, 1118, 1659
TseFI GTSAC 5 cut(s) 122, 287, 710, 716, 726
Tsp45I GTSAC 5 cut(s) 122, 287, 710, 716, 726
TspDTI ATGAA 9 cut(s) 66, 93, 246, 312, 345, 501, 798, 1248, 1448
TspRI CASTG 7 cut(s) 319, 685, 690, 721, 781, 1118, 1659
Tth111I GACNNNGTC 1 cut(s) 1546
VpaK11BI GGWCC 4 cut(s) 211, 592, 952, 1291
XapI RAATTY 3 cut(s) 16, 431, 1456
XceI RCATGY 1 cut(s) 1922
XcmI CCANNNNNNNNNTGG 1 cut(s) 1063
XhoI CTCGAG 2 cut(s) 501, 627
XmiI GTMKAC 1 cut(s) 1209
XmnI GAANNNNTTC 2 cut(s) 46, 674
XspI CTAG 5 cut(s) 84, 702, 995, 1169, 1545
Zsp2I ATGCAT 1 cut(s) 1471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.