Rh5CG065500

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0023111
Physical Location & Seq
Forward (+)
4996520 .. 4997351
832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG065500.1

Sequence Viewer

Length: 471 bp
ATGAGAGACTTCGTCATAGAGATTGAGGCAAAGTGTCGAACCTTGTGGCAAGAAGAGAACGATGCTGCTAATGAATACGAATCCAAGGAACTACTAGGGTTCATCTTTGAGACAAGGCGCCCCTTTCGGATAGCTAGTTATGCAGACAGGGCATTTGCTAATGAGATAAACATTGCTGTGAACAAGACCAGGCAAAGCAGATTTGGACAAGCCATCAATTCTGGTTTTCATGGCCTTCAATGTGCCAGGGATTGGTACACTAGGGAATGTGGTTCCGCGGGCATGAACCATGATCTGGTGCGGCATTTCGTAGATGTGCAGACGAGCCTTATTGCTCCGATCTGTCCACAGTCCACACTATGCCGAATATGTTTGGAAGCTGCTTTTGAAGAAGGGAAGGGTTTGTGGTTAGTACAGGCCTACAGGGTGGCTTGCGGCGGATGCTCCAGAAGATTCAGCCCTCCAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0001101 GO:0003674 GO:0003824 GO:0004812 GO:0004819 GO:0004823 GO:0004832 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006425 GO:0006429 GO:0006438 GO:0006518 GO:0006520 GO:0006605 GO:0006622 GO:0006623 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007034 GO:0007041 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009267 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009719 GO:0009892 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010506 GO:0010507 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016070 GO:0016604 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0023051 GO:0023056 GO:0030054 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032006 GO:0032008 GO:0032535 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034198 GO:0034613 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042594 GO:0042886 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043170 GO:0043200 GO:0043201 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0060589 GO:0061462 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071233 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090066 GO:0090304 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903432 GO:1904263 GO:1990253 GO:1990928
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
Anticodon_1 tRNA-synt_1

Protein Analysis

156

Amino Acids

17.78

Weight (kDa)

6.31

Isoelectric Point (pI)

63.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023111)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005098.1_g000014
rosa_rugosa Rorug04G0430500
rosa_samantha Rh5CG065500 Rh5CG065600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 117
AccB7I CCANNNNNTGG 2 cut(s) 252, 295
AccII CGCG 1 cut(s) 278
AciI CCGC 5 cut(s) 276, 278, 301, 435, 438
AcyI GRCGYC 1 cut(s) 118
AfaI GTAC 2 cut(s) 257, 414
AfiI CCNNNNNNNGG 2 cut(s) 252, 295
AgsI TTSAA 2 cut(s) 239, 389
AjnI CCWGG 2 cut(s) 188, 245
AluBI AGCT 2 cut(s) 134, 380
AluI AGCT 2 cut(s) 134, 380
Alw26I GTCTC 1 cut(s) 104
AoxI GGCC 2 cut(s) 232, 417
ApeKI GCWGC 2 cut(s) 65, 380
ArsI GACNNNNNNTTYG 2 cut(s) 137, 169
AspLEI GCGC 1 cut(s) 120
BanI GGYRCC 1 cut(s) 117
BbvI GCAGC 2 cut(s) 52, 367
BccI CCATC 1 cut(s) 221
BciT130I CCWGG 2 cut(s) 190, 247
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 3 cut(s) 95, 135, 261
BfmI CTRYAG 1 cut(s) 421
BfoI RGCGCY 1 cut(s) 121
BisI GCNGC 4 cut(s) 66, 302, 381, 436
BlsI GCNGC 4 cut(s) 67, 303, 382, 437
Bme1390I CCNGG 2 cut(s) 190, 247
BmiI GGNNCC 2 cut(s) 119, 274
BmrFI CCNGG 2 cut(s) 190, 247
BmsI GCATC 2 cut(s) 52, 431
BpmI CTGGAG 2 cut(s) 430, 447
BsaHI GRCGYC 1 cut(s) 118
BsaJI CCNNGG 3 cut(s) 84, 246, 276
Bsc4I CCNNNNNNNGG 2 cut(s) 252, 295
Bse3DI GCAATG 1 cut(s) 171
BseBI CCWGG 2 cut(s) 190, 247
BseDI CCNNGG 3 cut(s) 84, 246, 276
BseGI GGATG 1 cut(s) 446
BseLI CCNNNNNNNGG 2 cut(s) 252, 295
BseMI GCAATG 1 cut(s) 171
BseXI GCAGC 2 cut(s) 52, 367
BsgI GTGCAG 1 cut(s) 338
Bsh1236I CGCG 1 cut(s) 278
BshFI GGCC 2 cut(s) 234, 419
BshNI GGYRCC 1 cut(s) 117
BslI CCNNNNNNNGG 2 cut(s) 252, 295
BsmAI GTCTC 1 cut(s) 104
BsnI GGCC 2 cut(s) 234, 419
Bsp143I GATC 2 cut(s) 292, 339
BspACI CCGC 5 cut(s) 276, 278, 301, 435, 438
BspANI GGCC 2 cut(s) 234, 419
BspFNI CGCG 1 cut(s) 278
BspLI GGNNCC 2 cut(s) 119, 274
BspT107I GGYRCC 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 171
BssECI CCNNGG 3 cut(s) 84, 246, 276
BssMI GATC 2 cut(s) 292, 339
BssNI GRCGYC 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 2 cut(s) 190, 247
Bst4CI ACNGT 1 cut(s) 351
Bst6I CTCTTC 1 cut(s) 48
BstACI GRCGYC 1 cut(s) 118
BstC8I GCNNGC 2 cut(s) 280, 433
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 446
BstFNI CGCG 1 cut(s) 278
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 2 cut(s) 295, 342
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 2 cut(s) 292, 339
BstMWI GCNNNNNNNGC 3 cut(s) 140, 149, 441
BstNI CCWGG 2 cut(s) 190, 247
BstSCI CCNGG 2 cut(s) 188, 245
BstSFI CTRYAG 1 cut(s) 421
BstUI CGCG 1 cut(s) 278
BstV1I GCAGC 2 cut(s) 52, 367
BsuRI GGCC 2 cut(s) 234, 419
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 1 cut(s) 446
Cac8I GCNNGC 2 cut(s) 280, 433
CfoI GCGC 1 cut(s) 120
Cfr42I CCGCGG 1 cut(s) 279
Csp6I GTAC 2 cut(s) 256, 413
CviAII CATG 3 cut(s) 230, 283, 290
CviJI RGCY 8 cut(s) 134, 212, 234, 327, 380, 419, 431, 459
CviKI_1 RGCY 8 cut(s) 134, 212, 234, 327, 380, 419, 431, 459
CviQI GTAC 2 cut(s) 256, 413
DinI GGCGCC 1 cut(s) 119
DpnI GATC 2 cut(s) 294, 341
DpnII GATC 2 cut(s) 292, 339
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
EciI GGCGGA 1 cut(s) 453
Eco130I CCWWGG 1 cut(s) 84
Eco147I AGGCCT 1 cut(s) 419
EcoRII CCWGG 2 cut(s) 188, 245
EcoT14I CCWWGG 1 cut(s) 84
EgeI GGCGCC 1 cut(s) 119
EheI GGCGCC 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 3 cut(s) 233, 286, 293
FaiI YATR 7 cut(s) 17, 141, 231, 284, 291, 361, 370
FatI CATG 3 cut(s) 229, 282, 289
FauI CCCGC 1 cut(s) 271
Fnu4HI GCNGC 4 cut(s) 66, 302, 381, 436
FokI GGATG 1 cut(s) 453
Fsp4HI GCNGC 4 cut(s) 66, 302, 381, 436
FspBI CTAG 3 cut(s) 95, 135, 261
GlaI GCGC 1 cut(s) 119
GluI GCNGC 4 cut(s) 66, 302, 381, 436
GsuI CTGGAG 2 cut(s) 430, 447
HaeII RGCGCY 1 cut(s) 121
HaeIII GGCC 2 cut(s) 234, 419
HhaI GCGC 1 cut(s) 120
Hin1I GRCGYC 1 cut(s) 118
Hin1II CATG 3 cut(s) 233, 286, 293
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HinfI GANTC 2 cut(s) 80, 453
Hpy166II GTNNAC 4 cut(s) 181, 258, 347, 354
Hpy188I TCNGA 2 cut(s) 129, 339
Hpy188III TCNNGA 2 cut(s) 447, 464
Hpy8I GTNNAC 4 cut(s) 181, 258, 347, 354
HpyAV CCTTC 3 cut(s) 245, 386, 391
HpyCH4III ACNGT 1 cut(s) 351
HpyCH4V TGCA 2 cut(s) 143, 319
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 149, 441
Hsp92I GRCGYC 1 cut(s) 118
Hsp92II CATG 3 cut(s) 233, 286, 293
HspAI GCGC 1 cut(s) 118
KasI GGCGCC 1 cut(s) 117
KspI CCGCGG 1 cut(s) 279
Kzo9I GATC 2 cut(s) 292, 339
LmnI GCTCC 2 cut(s) 340, 449
Lsp1109I GCAGC 2 cut(s) 52, 367
LweI GCATC 2 cut(s) 52, 431
MaeI CTAG 3 cut(s) 95, 135, 261
MalI GATC 2 cut(s) 294, 341
MboI GATC 2 cut(s) 292, 339
MboII GAAGA 3 cut(s) 65, 401, 462
MluCI AATT 1 cut(s) 217
Mly113I GGCGCC 1 cut(s) 118
MnlI CCTC 2 cut(s) 19, 471
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 278
MspR9I CCNGG 2 cut(s) 190, 247
MvaI CCWGG 2 cut(s) 190, 247
MvnI CGCG 1 cut(s) 278
MwoI GCNNNNNNNGC 3 cut(s) 140, 149, 441
NarI GGCGCC 1 cut(s) 118
NdeII GATC 2 cut(s) 292, 339
NlaIII CATG 3 cut(s) 233, 286, 293
NlaIV GGNNCC 2 cut(s) 119, 274
PceI AGGCCT 1 cut(s) 419
PfeI GAWTC 2 cut(s) 80, 453
PflFI GACNNNGTC 1 cut(s) 11
PflMI CCANNNNNTGG 2 cut(s) 252, 295
PkrI GCNGC 4 cut(s) 67, 303, 382, 437
PluTI GGCGCC 1 cut(s) 121
Psp6I CCWGG 2 cut(s) 188, 245
PspGI CCWGG 2 cut(s) 188, 245
PspN4I GGNNCC 2 cut(s) 119, 274
PsyI GACNNNGTC 1 cut(s) 11
RsaI GTAC 2 cut(s) 257, 414
RsaNI GTAC 2 cut(s) 256, 413
RseI CAYNNNNRTG 1 cut(s) 176
SacII CCGCGG 1 cut(s) 279
SatI GCNGC 4 cut(s) 66, 302, 381, 436
Sau3AI GATC 2 cut(s) 292, 339
ScrFI CCNGG 2 cut(s) 190, 247
SetI ASST 3 cut(s) 44, 136, 382
SfaNI GCATC 2 cut(s) 52, 431
SfcI CTRYAG 1 cut(s) 421
SfoI GGCGCC 1 cut(s) 119
Sfr303I CCGCGG 1 cut(s) 279
SgrBI CCGCGG 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 176
Sse9I AATT 1 cut(s) 217
SseBI AGGCCT 1 cut(s) 419
SsiI CCGC 5 cut(s) 276, 278, 301, 435, 438
SspDI GGCGCC 1 cut(s) 117
SspMI CTAG 3 cut(s) 95, 135, 261
StuI AGGCCT 1 cut(s) 419
StyD4I CCNGG 2 cut(s) 188, 245
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 351
TaqI TCGA 1 cut(s) 37
TasI AATT 1 cut(s) 217
TatI WGTACW 1 cut(s) 412
TauI GCSGC 2 cut(s) 304, 438
TfiI GAWTC 2 cut(s) 80, 453
TseI GCWGC 2 cut(s) 65, 380
TspDTI ATGAA 4 cut(s) 87, 91, 218, 299
Tth111I GACNNNGTC 1 cut(s) 11
Van91I CCANNNNNTGG 2 cut(s) 252, 295
XspI CTAG 3 cut(s) 95, 135, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.