Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005182.1

Orthogroup ID

OG0018327

Physical Location & Seq

Genomic Coordinates Forward (+)

27285 .. 28316

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atggcgttcctgcgcggtgtctccaagctccgttcacgtctcggccagcagcctagtctccgtgattccgtcagatggcttcaaacgcagacctcctccgatctcgaccttcattctcagttgaaggaattgattccagaacaacaggagcgtctgaagaaactgaaggcagagcatggaaaagtacaattgggcaatatcactgttgatatggtgattggtggaatgaggggaatgacggggttgctgtgggaaacctctttacttgatccagatgaggtatgtatttgggttgctcatctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004108 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009060 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0015980 GO:0016740 GO:0016746 GO:0016999 GO:0017076 GO:0017144 GO:0019752 GO:0030312 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036440 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046686 GO:0046872 GO:0046912 GO:0046914 GO:0050896 GO:0055114 GO:0070013 GO:0071704 GO:0071944 GO:0072350 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Citrate_synt

Protein Analysis

101

Amino Acids

11.46

Weight (kDa)

7.95

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11270
rosa_multiflora	Rmu_sc0005182.1_g000005 Rmu_sc0007826.1_g000005
rosa_rugosa	Rorug07G0306100
rosa_samantha	Rh6AG285600 Rh6BG287000 Rh6CG288100 Rh7BG432900 Rh7CG479600 Rh7DG448700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	15
AciI	CCGC	1 cut(s)	15
AclWI	GGATC	1 cut(s)	263
AcoI	YGGCCR	1 cut(s)	43
AcuI	CTGAAG	2 cut(s)	176, 185
AfaI	GTAC	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	2 cut(s)	83, 124
AjiI	CACGTC	1 cut(s)	38
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
Alw26I	GTCTC	3 cut(s)	25, 44, 62
AlwI	GGATC	1 cut(s)	263
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	49
Asp700I	GAANNNNTTC	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	15
AsuHPI	GGTGA	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	1 cut(s)	69
BcoDI	GTCTC	3 cut(s)	25, 44, 62
BfaI	CTAG	1 cut(s)	54
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
BmgBI	CACGTC	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	131
BseRI	GAGGAG	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	3 cut(s)	25, 44, 62
BsmBI	CGTCTC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	100, 268
BspACI	CCGC	1 cut(s)	15
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	130
BspFNI	CGCG	1 cut(s)	15
BspPI	GGATC	1 cut(s)	263
BssMI	GATC	2 cut(s)	100, 268
Bst4CI	ACNGT	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	47
BstDEI	CTNAG	1 cut(s)	117
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	2 cut(s)	103, 271
BstMAI	GTCTC	3 cut(s)	25, 44, 62
BstMBI	GATC	2 cut(s)	100, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	85
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	47
CfoI	GCGC	1 cut(s)	15
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	185
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	4 cut(s)	28, 45, 52, 79
CviKI_1	RGCY	4 cut(s)	28, 45, 52, 79
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	2 cut(s)	102, 270
DpnII	GATC	2 cut(s)	100, 268
EaeI	YGGCCR	1 cut(s)	43
Eco57I	CTGAAG	2 cut(s)	176, 185
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	1 cut(s)	179
FaiI	YATR	3 cut(s)	177, 212, 283
FatI	CATG	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	50
FspBI	CTAG	1 cut(s)	54
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	45
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	1 cut(s)	15
Hin1II	CATG	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HinfI	GANTC	2 cut(s)	65, 133
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	3 cut(s)	74, 100, 156
Hpy188III	TCNNGA	3 cut(s)	104, 137, 272
Hpy8I	GTNNAC	1 cut(s)	35
HpyAV	CCTTC	3 cut(s)	118, 119, 160
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	1 cut(s)	37
HpyF10VI	GCNNNNNNNGC	1 cut(s)	85
HpyF3I	CTNAG	1 cut(s)	117
HpySE526I	ACGT	1 cut(s)	37
Hsp92II	CATG	1 cut(s)	179
HspAI	GCGC	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	100, 268
LmnI	GCTCC	2 cut(s)	33, 148
LpnPI	CCDG	5 cut(s)	23, 59, 131, 150, 285
Lsp1109I	GCAGC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	1 cut(s)	37
MalI	GATC	2 cut(s)	102, 270
MboI	GATC	2 cut(s)	100, 268
MboII	GAAGA	1 cut(s)	169
MfeI	CAATTG	1 cut(s)	188
MluCI	AATT	2 cut(s)	128, 188
MnlI	CCTC	5 cut(s)	103, 106, 222, 268, 271
MroXI	GAANNNNTTC	1 cut(s)	132
MunI	CAATTG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	1 cut(s)	85
NdeII	GATC	2 cut(s)	100, 268
NlaIII	CATG	1 cut(s)	179
NmeAIII	GCCGAG	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	65, 133
PkrI	GCNGC	1 cut(s)	51
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
SatI	GCNGC	1 cut(s)	50
Sau3AI	GATC	2 cut(s)	100, 268
SetI	ASST	6 cut(s)	30, 40, 95, 111, 260, 282
Sse9I	AATT	2 cut(s)	128, 188
SsiI	CCGC	1 cut(s)	15
SspMI	CTAG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	105
TasI	AATT	2 cut(s)	128, 188
TatI	WGTACW	1 cut(s)	184
TfiI	GAWTC	2 cut(s)	65, 133
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	3 cut(s)	20, 50, 58
TspRI	CASTG	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.