Rh6AG285600

Belongs to the citrate synthase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
48173825 .. 48179802
5978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG285600.1

Sequence Viewer

Length: 216 bp
ATGGCAACGGTAAGGCCTGCAGAGGCACTAACAGCACCAATATTGTTGAAGGGATTGATTCCAAAACAACAGGAACGTCTGAAGAAACTGAAGGCAGAACATGGCAAAGTACAATTGGGCATTATCACTGTTGATATGGTGATTGATGGAATGAGGGGAATGACGGTGTTGCTATGGAAACCACTTTACTTGATCCTGACAAGGGCATTCGCTTAG

Protein Analysis

71

Amino Acids

7.91

Weight (kDa)

10.21

Isoelectric Point (pI)

18.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018327)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 187
AcuI CTGAAG 2 cut(s) 101, 110
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 202
AgsI TTSAA 1 cut(s) 49
AlwI GGATC 1 cut(s) 187
AoxI GGCC 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 151
BccI CCATC 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 18
Bsc4I CCNNNNNNNGG 1 cut(s) 202
BseLI CCNNNNNNNGG 1 cut(s) 202
BshFI GGCC 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 202
BsmI GAATGC 1 cut(s) 206
BsnI GGCC 1 cut(s) 16
Bsp143I GATC 1 cut(s) 192
BspANI GGCC 1 cut(s) 16
BspMAI CTGCAG 1 cut(s) 22
BspPI GGATC 1 cut(s) 187
BssMI GATC 1 cut(s) 192
Bst4CI ACNGT 3 cut(s) 10, 130, 166
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 1 cut(s) 213
BstKTI GATC 1 cut(s) 195
BstMBI GATC 1 cut(s) 192
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstSFI CTRYAG 1 cut(s) 18
BsuRI GGCC 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 110
CspCI CAANNNNNGTGG 2 cut(s) 171, 206
CviAII CATG 1 cut(s) 101
CviJI RGCY 1 cut(s) 16
CviKI_1 RGCY 1 cut(s) 16
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 1 cut(s) 213
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
Eco147I AGGCCT 1 cut(s) 16
Eco57I CTGAAG 2 cut(s) 101, 110
FaeI CATG 1 cut(s) 104
FaiI YATR 3 cut(s) 102, 137, 175
FatI CATG 1 cut(s) 100
HaeIII GGCC 1 cut(s) 16
Hin1II CATG 1 cut(s) 104
HinfI GANTC 1 cut(s) 58
HphI GGTGA 1 cut(s) 151
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 1 cut(s) 196
HpyAV CCTTC 2 cut(s) 43, 85
HpyCH4III ACNGT 3 cut(s) 10, 130, 166
HpyCH4IV ACGT 1 cut(s) 76
HpyCH4V TGCA 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 1 cut(s) 104
Kzo9I GATC 1 cut(s) 192
LpnPI CCDG 3 cut(s) 30, 56, 209
MaeII ACGT 1 cut(s) 76
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MboII GAAGA 1 cut(s) 94
MfeI CAATTG 1 cut(s) 113
MluCI AATT 1 cut(s) 113
MnlI CCTC 2 cut(s) 16, 147
MunI CAATTG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 32
NdeII GATC 1 cut(s) 192
NlaIII CATG 1 cut(s) 104
PceI AGGCCT 1 cut(s) 16
PctI GAATGC 1 cut(s) 206
PfeI GAWTC 1 cut(s) 58
PstI CTGCAG 1 cut(s) 22
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
Sau3AI GATC 1 cut(s) 192
SetI ASST 1 cut(s) 79
SfcI CTRYAG 1 cut(s) 18
SgeI CNNG 5 cut(s) 29, 83, 113, 202, 208
Sse9I AATT 1 cut(s) 113
SseBI AGGCCT 1 cut(s) 16
SspI AATATT 1 cut(s) 42
StuI AGGCCT 1 cut(s) 16
TaaI ACNGT 3 cut(s) 10, 130, 166
TaiI ACGT 1 cut(s) 79
TasI AATT 1 cut(s) 113
TatI WGTACW 1 cut(s) 109
TfiI GAWTC 1 cut(s) 58
TscAI CASTG 1 cut(s) 133
TspRI CASTG 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.