Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0018327

Physical Location & Seq

Genomic Coordinates Reverse (-)

51203584 .. 51209708

Gene Structure 6125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG287000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCCAAGATCGTCGAGGTCGGACCAACAATGGACAACCAATGCTCTTTGTCCACCGAAACCGTTAACGACGTGCACATGCCAGTTGGTGGGATCAAGACCGGGCCATTTGGCAGAGGATTCCGGACAGATACTCAGGGCTAAAGCGTGTTTGAAGGGATTGATTCCAAAACAACAGGAACGTCTGAAGAAACTGAATGCAGAACATGGCAAAGTACAATTGGGCACTATCACTGTTGATATGGTGATTAATGGAATGAGGGGAATGACGGGGTTGCTATGGAAACCACTTTACTTGATCCTGACAAGGGCATTCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004108 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009060 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0015980 GO:0016740 GO:0016746 GO:0016999 GO:0017076 GO:0017144 GO:0019752 GO:0030312 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036440 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046686 GO:0046872 GO:0046912 GO:0046914 GO:0050896 GO:0055114 GO:0070013 GO:0071704 GO:0071944 GO:0072350 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Citrate_synt

Protein Analysis

106

Amino Acids

11.7

Weight (kDa)

9.97

Isoelectric Point (pI)

41.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11270
rosa_multiflora	Rmu_sc0005182.1_g000005 Rmu_sc0007826.1_g000005
rosa_rugosa	Rorug07G0306100
rosa_samantha	Rh6AG285600 Rh6BG287000 Rh6CG288100 Rh7BG432900 Rh7CG479600 Rh7DG448700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccIII	TCCGGA	1 cut(s)	122
AclWI	GGATC	2 cut(s)	100, 292
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	1 cut(s)	216
AfiI	CCNNNNNNNGG	2 cut(s)	88, 307
AgsI	TTSAA	1 cut(s)	154
AjiI	CACGTC	1 cut(s)	72
Alw21I	GWGCWC	1 cut(s)	77
Alw44I	GTGCAC	1 cut(s)	73
AlwI	GGATC	2 cut(s)	100, 292
Aor13HI	TCCGGA	1 cut(s)	122
AoxI	GGCC	1 cut(s)	103
ApaLI	GTGCAC	1 cut(s)	73
AseI	ATTAAT	1 cut(s)	249
AspS9I	GGNCC	2 cut(s)	22, 103
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	22
BaeGI	GKGCMC	2 cut(s)	77, 227
Bbv12I	GWGCWC	1 cut(s)	77
BcnI	CCSGG	1 cut(s)	102
Bme1390I	CCNGG	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	22
BmgBI	CACGTC	1 cut(s)	72
BmgT120I	GGNCC	2 cut(s)	22, 103
BmrFI	CCNGG	1 cut(s)	102
BpuMI	CCSGG	1 cut(s)	102
BsaWI	WCCGGW	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 307
Bse1I	ACTGG	1 cut(s)	82
BseAI	TCCGGA	1 cut(s)	122
BseLI	CCNNNNNNNGG	2 cut(s)	88, 307
BseMII	CTCAG	1 cut(s)	148
BseNI	ACTGG	1 cut(s)	82
BseSI	GKGCMC	2 cut(s)	77, 227
BshFI	GGCC	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	101, 123
BslI	CCNNNNNNNGG	2 cut(s)	88, 307
BsmI	GAATGC	2 cut(s)	202, 311
BsnI	GGCC	1 cut(s)	105
Bsp1286I	GDGCHC	2 cut(s)	77, 227
Bsp13I	TCCGGA	1 cut(s)	122
Bsp143I	GATC	3 cut(s)	8, 92, 297
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	1 cut(s)	147
BspEI	TCCGGA	1 cut(s)	122
BspPI	GGATC	2 cut(s)	100, 292
BsrI	ACTGG	1 cut(s)	82
BssMI	GATC	3 cut(s)	8, 92, 297
Bst4CI	ACNGT	2 cut(s)	63, 235
BstDEI	CTNAG	2 cut(s)	134, 318
BstKTI	GATC	3 cut(s)	11, 95, 300
BstMBI	GATC	3 cut(s)	8, 92, 297
BstNSI	RCATGY	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	100
BstSLI	GKGCMC	2 cut(s)	77, 227
BsuRI	GGCC	1 cut(s)	105
BtrI	CACGTC	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	231
Cfr13I	GGNCC	2 cut(s)	22, 103
Csp6I	GTAC	1 cut(s)	215
CspCI	CAANNNNNGTGG	2 cut(s)	276, 311
CviAII	CATG	2 cut(s)	78, 206
CviJI	RGCY	2 cut(s)	105, 140
CviKI_1	RGCY	2 cut(s)	105, 140
CviQI	GTAC	1 cut(s)	215
DdeI	CTNAG	2 cut(s)	134, 318
DpnI	GATC	3 cut(s)	10, 94, 299
DpnII	GATC	3 cut(s)	8, 92, 297
Eco47I	GGWCC	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	206
FaeI	CATG	2 cut(s)	81, 209
FaiI	YATR	4 cut(s)	79, 207, 242, 280
FatI	CATG	2 cut(s)	77, 205
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	2 cut(s)	101, 123
Hin1II	CATG	2 cut(s)	81, 209
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	2 cut(s)	119, 163
HpaI	GTTAAC	1 cut(s)	66
HpaII	CCGG	2 cut(s)	101, 123
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	3 cut(s)	53, 66, 75
Hpy188I	TCNGA	2 cut(s)	22, 186
Hpy188III	TCNNGA	3 cut(s)	96, 123, 301
Hpy8I	GTNNAC	3 cut(s)	53, 66, 75
Hpy99I	CGWCG	2 cut(s)	16, 73
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	2 cut(s)	63, 235
HpyCH4IV	ACGT	2 cut(s)	71, 181
HpyCH4V	TGCA	2 cut(s)	75, 200
HpyF3I	CTNAG	2 cut(s)	134, 318
HpySE526I	ACGT	2 cut(s)	71, 181
Hsp92II	CATG	2 cut(s)	81, 209
Kpn2I	TCCGGA	1 cut(s)	122
KspAI	GTTAAC	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	8, 92, 297
LpnPI	CCDG	6 cut(s)	95, 114, 121, 136, 161, 314
MaeII	ACGT	2 cut(s)	71, 181
MalI	GATC	3 cut(s)	10, 94, 299
MboI	GATC	3 cut(s)	8, 92, 297
MboII	GAAGA	1 cut(s)	199
MfeI	CAATTG	1 cut(s)	218
MhlI	GDGCHC	2 cut(s)	77, 227
MluCI	AATT	1 cut(s)	218
MnlI	CCTC	3 cut(s)	9, 109, 252
MroI	TCCGGA	1 cut(s)	122
MseI	TTAA	2 cut(s)	65, 249
MspI	CCGG	2 cut(s)	101, 123
MspR9I	CCNGG	1 cut(s)	102
MunI	CAATTG	1 cut(s)	218
Mva1269I	GAATGC	2 cut(s)	202, 311
NciI	CCSGG	1 cut(s)	102
NdeII	GATC	3 cut(s)	8, 92, 297
NlaIII	CATG	2 cut(s)	81, 209
NspI	RCATGY	1 cut(s)	81
PctI	GAATGC	2 cut(s)	202, 311
PfeI	GAWTC	2 cut(s)	119, 163
PflMI	CCANNNNNTGG	1 cut(s)	88
PshBI	ATTAAT	1 cut(s)	249
PspPI	GGNCC	2 cut(s)	22, 103
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
SaqAI	TTAA	2 cut(s)	65, 249
Sau3AI	GATC	3 cut(s)	8, 92, 297
Sau96I	GGNCC	2 cut(s)	22, 103
ScrFI	CCNGG	1 cut(s)	102
SduI	GDGCHC	2 cut(s)	77, 227
SetI	ASST	3 cut(s)	20, 74, 184
SinI	GGWCC	1 cut(s)	22
Sse9I	AATT	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	100
TaaI	ACNGT	2 cut(s)	63, 235
TaiI	ACGT	2 cut(s)	74, 184
TaqI	TCGA	1 cut(s)	14
TasI	AATT	1 cut(s)	218
TatI	WGTACW	1 cut(s)	214
TfiI	GAWTC	2 cut(s)	119, 163
Tru1I	TTAA	2 cut(s)	65, 249
Tru9I	TTAA	2 cut(s)	65, 249
TscAI	CASTG	1 cut(s)	238
TspRI	CASTG	1 cut(s)	238
Van91I	CCANNNNNTGG	1 cut(s)	88
VneI	GTGCAC	1 cut(s)	73
VpaK11BI	GGWCC	1 cut(s)	22
VspI	ATTAAT	1 cut(s)	249
XceI	RCATGY	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.