Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0018327

Physical Location & Seq

Genomic Coordinates Forward (+)

30683138 .. 30683626

Gene Structure 489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0306100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCTACAAAAAGCAAAAACTGTATGGAGAACAAAAGGGCATTGGTGATACAAGACAATGGAGAAGCAGAGCAACAGATAGTGACTCCATGGAGGGTGGAGGCTAAAGGTGGCAGCAAAATCGATTACGATAAGCTTATTAACCAGTTTGGTTGCCAGAGGCTCGATCAATCTCTTAACGACCAGGTCCACCGACTCACATCACGTGCTCCGCACGTCTTACTCCGCCGTGGGGTTTTCTTTGCCCACCGGGACTTCAATGAGATTCTAGATGCTTATGAGAAAGGAGACAAGTTCTATTTGTACACAGGAAGAGGGCCTTCTTCTGAGTCTTTGCATTTGGGACATCTCATCCCCTTCATGTTCACTAAATATTTGCAAGATGCCTTCAAGGTTCCTCTGGTTATACAACTCACTGATGACGAGAAATGCATGTGGAAAAAACCTCACCGTGGAAGAAAGCCAGAGACTTGCAAGGGAGAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004108 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009060 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0015980 GO:0016740 GO:0016746 GO:0016999 GO:0017076 GO:0017144 GO:0019752 GO:0030312 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036440 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046686 GO:0046872 GO:0046912 GO:0046914 GO:0050896 GO:0055114 GO:0070013 GO:0071704 GO:0071944 GO:0072350 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Citrate_synt

Protein Analysis

162

Amino Acids

18.76

Weight (kDa)

8.95

Isoelectric Point (pI)

36.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11270
rosa_multiflora	Rmu_sc0005182.1_g000005 Rmu_sc0007826.1_g000005
rosa_rugosa	Rorug07G0306100
rosa_samantha	Rh6AG285600 Rh6BG287000 Rh6CG288100 Rh7BG432900 Rh7CG479600 Rh7DG448700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	212, 226
AcvI	CACGTG	1 cut(s)	206
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	2 cut(s)	232, 452
AgsI	TTSAA	2 cut(s)	259, 391
AjiI	CACGTC	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	2 cut(s)	282, 461
AoxI	GGCC	1 cut(s)	317
ApeKI	GCWGC	1 cut(s)	114
AspS9I	GGNCC	2 cut(s)	187, 317
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	2 cut(s)	58, 440
AvaII	GGWCC	1 cut(s)	187
BbrPI	CACGTG	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	126
BceAI	ACGGC	1 cut(s)	213
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciT130I	CCWGG	1 cut(s)	185
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	2 cut(s)	282, 461
BfaI	CTAG	1 cut(s)	269
BisI	GCNGC	1 cut(s)	115
BlsI	GCNGC	1 cut(s)	116
Bme1390I	CCNGG	2 cut(s)	185, 251
Bme18I	GGWCC	1 cut(s)	187
BmgBI	CACGTC	1 cut(s)	217
BmgT120I	GGNCC	2 cut(s)	187, 317
BmiI	GGNNCC	1 cut(s)	396
BmrFI	CCNGG	2 cut(s)	185, 251
BmsI	GCATC	2 cut(s)	262, 373
BpuMI	CCSGG	1 cut(s)	251
Bsa29I	ATCGAT	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	206
BsaJI	CCNNGG	3 cut(s)	89, 229, 451
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 452
Bse1I	ACTGG	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	185
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	3 cut(s)	89, 229, 451
BseGI	GGATG	1 cut(s)	351
BseLI	CCNNNNNNNGG	2 cut(s)	232, 452
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	126
BshFI	GGCC	1 cut(s)	319
BshVI	ATCGAT	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	2 cut(s)	266, 357
BslI	CCNNNNNNNGG	2 cut(s)	232, 452
BsmAI	GTCTC	2 cut(s)	282, 461
BsmFI	GGGAC	2 cut(s)	266, 357
BsmI	GAATGC	1 cut(s)	488
BsnI	GGCC	1 cut(s)	319
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	303
Bsp143I	GATC	1 cut(s)	166
Bsp19I	CCATGG	1 cut(s)	89
BspACI	CCGC	2 cut(s)	212, 226
BspANI	GGCC	1 cut(s)	319
BspCNI	CTCAG	1 cut(s)	319
BspDI	ATCGAT	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	396
BsrGI	TGTACA	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	3 cut(s)	89, 229, 451
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	2 cut(s)	23, 452
Bst6I	CTCTTC	1 cut(s)	307
BstAUI	TGTACA	1 cut(s)	303
BstBAI	YACGTR	1 cut(s)	206
BstDEI	CTNAG	1 cut(s)	327
BstDSI	CCRYGG	3 cut(s)	89, 229, 451
BstF5I	GGATG	1 cut(s)	351
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	2 cut(s)	282, 461
BstMBI	GATC	1 cut(s)	166
BstNI	CCWGG	1 cut(s)	185
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	2 cut(s)	183, 249
BstV1I	GCAGC	1 cut(s)	126
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	319
BsuTUI	ATCGAT	1 cut(s)	123
BtgI	CCRYGG	3 cut(s)	89, 229, 451
BtrI	CACGTC	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	414
Cfr13I	GGNCC	2 cut(s)	187, 317
ClaI	ATCGAT	1 cut(s)	123
CsiI	ACCWGGT	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	3 cut(s)	90, 361, 433
CviJI	RGCY	6 cut(s)	5, 104, 136, 163, 319, 463
CviKI_1	RGCY	6 cut(s)	5, 104, 136, 163, 319, 463
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	307
EarI	CTCTTC	1 cut(s)	307
EciI	GGCGGA	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	187
Eco72I	CACGTG	1 cut(s)	206
EcoO109I	RGGNCCY	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	89
EcoT22I	ATGCAT	1 cut(s)	434
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	3 cut(s)	93, 364, 436
FaiI	YATR	6 cut(s)	26, 91, 279, 362, 407, 434
FalI	AAGNNNNNCTT	2 cut(s)	304, 336
FaqI	GGGAC	2 cut(s)	266, 357
FatI	CATG	3 cut(s)	89, 360, 432
Fnu4HI	GCNGC	1 cut(s)	115
FokI	GGATG	1 cut(s)	338
Fsp4HI	GCNGC	1 cut(s)	115
FspBI	CTAG	1 cut(s)	269
GluI	GCNGC	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	319
HapII	CCGG	1 cut(s)	250
Hin1II	CATG	3 cut(s)	93, 364, 436
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	4 cut(s)	85, 195, 265, 329
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	2 cut(s)	58, 440
Hpy166II	GTNNAC	3 cut(s)	190, 306, 366
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	3 cut(s)	190, 306, 366
HpyAV	CCTTC	3 cut(s)	330, 367, 397
HpyCH4III	ACNGT	2 cut(s)	23, 452
HpyCH4IV	ACGT	2 cut(s)	205, 216
HpyCH4V	TGCA	4 cut(s)	337, 379, 432, 474
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	2 cut(s)	205, 216
Hsp92II	CATG	3 cut(s)	93, 364, 436
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	8 cut(s)	158, 170, 170, 197, 263, 294, 386, 477
Lsp1109I	GCAGC	1 cut(s)	126
LweI	GCATC	2 cut(s)	262, 373
MabI	ACCWGGT	1 cut(s)	183
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	2 cut(s)	205, 216
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	3 cut(s)	315, 324, 468
MhlI	GDGCHC	1 cut(s)	211
MlyI	GAGTC	3 cut(s)	79, 189, 338
MnlI	CCTC	6 cut(s)	87, 94, 153, 308, 408, 456
Mph1103I	ATGCAT	1 cut(s)	434
MseI	TTAA	2 cut(s)	141, 177
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	2 cut(s)	185, 251
Mva1269I	GAATGC	1 cut(s)	488
MvaI	CCWGG	1 cut(s)	185
NciI	CCSGG	1 cut(s)	251
NcoI	CCATGG	1 cut(s)	89
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	3 cut(s)	93, 364, 436
NlaIV	GGNNCC	1 cut(s)	396
NmuCI	GTSAC	1 cut(s)	82
NsiI	ATGCAT	1 cut(s)	434
NspI	RCATGY	1 cut(s)	436
PctI	GAATGC	1 cut(s)	488
PfeI	GAWTC	1 cut(s)	265
PflFI	GACNNNGTC	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	116
PleI	GAGTC	3 cut(s)	79, 189, 337
PmaCI	CACGTG	1 cut(s)	206
PmlI	CACGTG	1 cut(s)	206
PpsI	GAGTC	3 cut(s)	79, 189, 337
Ppu21I	YACGTR	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	183
PspCI	CACGTG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	396
PspPI	GGNCC	2 cut(s)	187, 317
PsyI	GACNNNGTC	1 cut(s)	185
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SaqAI	TTAA	2 cut(s)	141, 177
SatI	GCNGC	1 cut(s)	115
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	2 cut(s)	187, 317
SchI	GAGTC	3 cut(s)	79, 189, 338
ScrFI	CCNGG	2 cut(s)	185, 251
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	7 cut(s)	112, 138, 189, 208, 219, 396, 448
SexAI	ACCWGGT	1 cut(s)	183
SfaNI	GCATC	2 cut(s)	262, 373
SinI	GGWCC	1 cut(s)	187
SsiI	CCGC	2 cut(s)	212, 226
SspI	AATATT	1 cut(s)	374
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	2 cut(s)	183, 249
StyI	CCWWGG	1 cut(s)	89
TaaI	ACNGT	2 cut(s)	23, 452
TaiI	ACGT	2 cut(s)	208, 219
TaqI	TCGA	2 cut(s)	123, 165
TatI	WGTACW	1 cut(s)	303
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	2 cut(s)	141, 177
Tru9I	TTAA	2 cut(s)	141, 177
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	114
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	349
TspRI	CASTG	1 cut(s)	421
Tth111I	GACNNNGTC	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	187
XbaI	TCTAGA	1 cut(s)	268
XceI	RCATGY	1 cut(s)	436
XspI	CTAG	1 cut(s)	269
Zsp2I	ATGCAT	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.