Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005257.1

Orthogroup ID

OG0020747

Physical Location & Seq

Genomic Coordinates Reverse (-)

57303 .. 57632

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005257.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atggcaattgatcttggcctcagccttgcctcctctatacctctatcttcttttcagttggaatcagactctttggtattgacatcagcttttttacaccctttatctgcggttgattggtcggcctctcagattgtttcatccatccgaacgaaggcctctcgtttcaaccttgtaaactggcgttggaccagtaggagggcaaacgctgcagctgatcttgtggcagcgtgggcctcgcgcagggtgtgcccggtggattgggactctaatccccctccctccctaatgcgcattttgctctatgatgcagctggtcccccaccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

109

Amino Acids

11.85

Weight (kDa)

7.98

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020747)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005257.1_g000007 Rmu_sc0009745.1_g000003
rosa_roxburghii	Rroxscaffold_6G00416340
rosa_samantha	Rh3AG124300 Rh3BG128900 Rh3CG131100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	293
AccII	CGCG	1 cut(s)	241
AciI	CCGC	1 cut(s)	110
AfiI	CCNNNNNNNGG	3 cut(s)	154, 198, 243
AgsI	TTSAA	1 cut(s)	169
AluBI	AGCT	3 cut(s)	89, 215, 314
AluI	AGCT	3 cut(s)	89, 215, 314
AoxI	GGCC	4 cut(s)	16, 123, 156, 234
ApeKI	GCWGC	4 cut(s)	209, 212, 227, 311
AspLEI	GCGC	2 cut(s)	243, 294
AspS9I	GGNCC	3 cut(s)	189, 234, 317
AsuC2I	CCSGG	1 cut(s)	254
AvaII	GGWCC	2 cut(s)	189, 317
BaeGI	GKGCMC	1 cut(s)	254
BbvCI	CCTCAGC	1 cut(s)	20
BbvI	GCAGC	4 cut(s)	196, 224, 239, 323
BccI	CCATC	1 cut(s)	152
BcnI	CCSGG	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	210
BisI	GCNGC	4 cut(s)	210, 213, 228, 312
BlsI	GCNGC	4 cut(s)	211, 214, 229, 313
Bme1390I	CCNGG	1 cut(s)	254
Bme18I	GGWCC	2 cut(s)	189, 317
BmgT120I	GGNCC	3 cut(s)	189, 234, 317
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	1 cut(s)	254
BmsI	GCATC	1 cut(s)	298
Bpu10I	CCTNAGC	1 cut(s)	20
BpuMI	CCSGG	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 198, 243
Bse1I	ACTGG	2 cut(s)	185, 192
BseGI	GGATG	2 cut(s)	140, 144
BseLI	CCNNNNNNNGG	3 cut(s)	154, 198, 243
BseMII	CTCAG	2 cut(s)	34, 143
BseNI	ACTGG	2 cut(s)	185, 192
BseRI	GAGGAG	1 cut(s)	22
BseSI	GKGCMC	1 cut(s)	254
BseXI	GCAGC	4 cut(s)	196, 224, 239, 323
Bsh1236I	CGCG	1 cut(s)	241
BshFI	GGCC	4 cut(s)	18, 125, 158, 236
BsiSI	CCGG	1 cut(s)	254
BslFI	GGGAC	2 cut(s)	278, 303
BslI	CCNNNNNNNGG	3 cut(s)	154, 198, 243
BsmFI	GGGAC	2 cut(s)	278, 303
BsnI	GGCC	4 cut(s)	18, 125, 158, 236
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp143I	GATC	2 cut(s)	10, 217
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	4 cut(s)	18, 125, 158, 236
BspCNI	CTCAG	2 cut(s)	33, 142
BspFNI	CGCG	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	319
BspMAI	CTGCAG	1 cut(s)	214
BsrI	ACTGG	2 cut(s)	185, 192
BssMI	GATC	2 cut(s)	10, 217
BstAPI	GCANNNNNTGC	2 cut(s)	209, 249
BstDEI	CTNAG	3 cut(s)	20, 129, 327
BstENI	CCTNNNNNAGG	1 cut(s)	241
BstF5I	GGATG	2 cut(s)	140, 144
BstFNI	CGCG	1 cut(s)	241
BstHHI	GCGC	2 cut(s)	243, 294
BstKTI	GATC	2 cut(s)	13, 220
BstMBI	GATC	2 cut(s)	10, 217
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 233, 249, 298
BstSCI	CCNGG	1 cut(s)	252
BstSFI	CTRYAG	1 cut(s)	210
BstSLI	GKGCMC	1 cut(s)	254
BstUI	CGCG	1 cut(s)	241
BstV1I	GCAGC	4 cut(s)	196, 224, 239, 323
BsuRI	GGCC	4 cut(s)	18, 125, 158, 236
BtsCI	GGATG	2 cut(s)	140, 144
CfoI	GCGC	2 cut(s)	243, 294
Cfr13I	GGNCC	3 cut(s)	189, 234, 317
CviJI	RGCY	8 cut(s)	18, 24, 89, 125, 158, 215, 236, 314
CviKI_1	RGCY	8 cut(s)	18, 24, 89, 125, 158, 215, 236, 314
DdeI	CTNAG	3 cut(s)	20, 129, 327
DpnI	GATC	2 cut(s)	12, 219
DpnII	GATC	2 cut(s)	10, 217
Eco147I	AGGCCT	1 cut(s)	158
Eco47I	GGWCC	2 cut(s)	189, 317
EcoNI	CCTNNNNNAGG	1 cut(s)	241
FaiI	YATR	2 cut(s)	38, 306
FaqI	GGGAC	2 cut(s)	278, 303
Fnu4HI	GCNGC	4 cut(s)	210, 213, 228, 312
FokI	GGATG	2 cut(s)	127, 131
Fsp4HI	GCNGC	4 cut(s)	210, 213, 228, 312
FspAI	RTGCGCAY	1 cut(s)	293
FspI	TGCGCA	1 cut(s)	293
GlaI	GCGC	2 cut(s)	242, 293
GluI	GCNGC	4 cut(s)	210, 213, 228, 312
HaeIII	GGCC	4 cut(s)	18, 125, 158, 236
HapII	CCGG	1 cut(s)	254
HhaI	GCGC	2 cut(s)	243, 294
Hin6I	GCGC	2 cut(s)	241, 292
HinP1I	GCGC	2 cut(s)	241, 292
HinfI	GANTC	3 cut(s)	62, 68, 266
HpaII	CCGG	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	3 cut(s)	67, 132, 149
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	148
HpyCH4V	TGCA	2 cut(s)	212, 311
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 233, 249, 298
HpyF3I	CTNAG	3 cut(s)	20, 129, 327
HspAI	GCGC	2 cut(s)	241, 292
Kzo9I	GATC	2 cut(s)	10, 217
LpnPI	CCDG	5 cut(s)	166, 205, 229, 267, 300
Lsp1109I	GCAGC	4 cut(s)	196, 224, 239, 323
LweI	GCATC	1 cut(s)	298
MalI	GATC	2 cut(s)	12, 219
MboI	GATC	2 cut(s)	10, 217
MboII	GAAGA	1 cut(s)	39
MfeI	CAATTG	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	254
MluCI	AATT	1 cut(s)	6
MlyI	GAGTC	2 cut(s)	62, 260
MmeI	TCCRAC	2 cut(s)	39, 167
MspA1I	CMGCKG	2 cut(s)	215, 314
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	254
MunI	CAATTG	1 cut(s)	6
MvnI	CGCG	1 cut(s)	241
MwoI	GCNNNNNNNGC	4 cut(s)	209, 233, 249, 298
NciI	CCSGG	1 cut(s)	254
NdeII	GATC	2 cut(s)	10, 217
NlaIV	GGNNCC	1 cut(s)	319
NsbI	TGCGCA	1 cut(s)	293
PceI	AGGCCT	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	4 cut(s)	211, 214, 229, 313
PleI	GAGTC	2 cut(s)	62, 260
PpsI	GAGTC	2 cut(s)	62, 260
PspN4I	GGNNCC	1 cut(s)	319
PspPI	GGNCC	3 cut(s)	189, 234, 317
PstI	CTGCAG	1 cut(s)	214
PvuII	CAGCTG	2 cut(s)	215, 314
SatI	GCNGC	4 cut(s)	210, 213, 228, 312
Sau3AI	GATC	2 cut(s)	10, 217
Sau96I	GGNCC	3 cut(s)	189, 234, 317
SchI	GAGTC	2 cut(s)	62, 260
ScrFI	CCNGG	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	254
SetI	ASST	6 cut(s)	43, 91, 174, 217, 316, 328
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	1 cut(s)	210
SinI	GGWCC	2 cut(s)	189, 317
Sse9I	AATT	1 cut(s)	6
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	1 cut(s)	110
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	252
TasI	AATT	1 cut(s)	6
TfiI	GAWTC	1 cut(s)	62
TseI	GCWGC	4 cut(s)	209, 212, 227, 311
TspDTI	ATGAA	1 cut(s)	129
VpaK11BI	GGWCC	2 cut(s)	189, 317
XagI	CCTNNNNNAGG	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.