Rmu_sc0009745.1_g000003

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009745.1
OG0020747
Physical Location & Seq
Reverse (-)
12228 .. 13675
1448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009745.1_g000003.1.cds

Sequence Viewer

Length: 480 bp
atggcgatcagactgggactttctcttgcatcttctttatccctttcttcttttcagctggaatctgactccttggtcttgatttcaacttttttaaaccccctttcgtcgattgattggactgccacgcatgttgttgtggatattcgagcatcggctagtcgtttcgatcgagtaaactggctttggaccagtagacatgccaacgctactgcagattttgtcgcagggatggcatcgcgcagggtgtgcccggcggactggccacacaacttgaagctctcgaccccacgaatccagaacaggcggcataaccaccagaacgtgccggaaacctacagaaccggccacaggaaactccaaaccacccgcagtaaatactctacctattcaccacctttcggacctcctattttcaccaaattttgccagcagaagcctttcaactccaggattcaggaaccggaggaaaatcactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

159

Amino Acids

18.15

Weight (kDa)

10.2

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020747)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005257.1_g000007 Rmu_sc0009745.1_g000003
rosa_roxburghii Rroxscaffold_6G00416340
rosa_samantha Rh3AG124300 Rh3BG128900 Rh3CG131100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccI GTMKAC 1 cut(s) 196
AccII CGCG 1 cut(s) 241
AciI CCGC 3 cut(s) 257, 307, 370
AcoI YGGCCR 2 cut(s) 263, 346
AcsI RAATTY 1 cut(s) 422
AfiI CCNNNNNNNGG 2 cut(s) 351, 401
AgsI TTSAA 3 cut(s) 87, 277, 445
AjnI CCWGG 1 cut(s) 449
AluBI AGCT 2 cut(s) 58, 280
AluI AGCT 2 cut(s) 58, 280
AoxI GGCC 2 cut(s) 263, 346
ApoI RAATTY 1 cut(s) 422
Asp700I GAANNNNTTC 1 cut(s) 440
AspLEI GCGC 1 cut(s) 243
AspS9I GGNCC 2 cut(s) 189, 404
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 2 cut(s) 384, 409
AvaII GGWCC 2 cut(s) 189, 404
BaeGI GKGCMC 1 cut(s) 254
BalI TGGCCA 1 cut(s) 265
BccI CCATC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 451
BcnI CCSGG 1 cut(s) 254
BfaI CTAG 1 cut(s) 159
BfmI CTRYAG 2 cut(s) 213, 337
BisI GCNGC 1 cut(s) 308
BlsI GCNGC 1 cut(s) 309
Bme1390I CCNGG 2 cut(s) 254, 451
Bme18I GGWCC 2 cut(s) 189, 404
BmgT120I GGNCC 2 cut(s) 189, 404
BmiI GGNNCC 1 cut(s) 462
BmrFI CCNGG 2 cut(s) 254, 451
BmrI ACTGGG 1 cut(s) 23
BmsI GCATC 3 cut(s) 38, 161, 245
BmuI ACTGGG 1 cut(s) 23
BpmI CTGGAG 1 cut(s) 433
BpuMI CCSGG 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 463
Bsc4I CCNNNNNNNGG 2 cut(s) 351, 401
Bse118I RCCGGY 1 cut(s) 344
Bse1I ACTGG 4 cut(s) 18, 185, 192, 266
BseBI CCWGG 1 cut(s) 451
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 237
BseLI CCNNNNNNNGG 2 cut(s) 351, 401
BseNI ACTGG 4 cut(s) 18, 185, 192, 266
BseSI GKGCMC 1 cut(s) 254
Bsh1236I CGCG 1 cut(s) 241
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 2 cut(s) 265, 348
BsiEI CGRYCG 1 cut(s) 172
BsiSI CCGG 4 cut(s) 254, 329, 345, 464
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 2 cut(s) 351, 401
BsmFI GGGAC 1 cut(s) 30
BsnI GGCC 2 cut(s) 265, 348
Bsp1286I GDGCHC 1 cut(s) 254
Bsp143I GATC 2 cut(s) 6, 169
BspACI CCGC 3 cut(s) 257, 307, 370
BspANI GGCC 2 cut(s) 265, 348
BspFNI CGCG 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 462
BspMAI CTGCAG 1 cut(s) 217
BsrFI RCCGGY 1 cut(s) 344
BsrI ACTGG 4 cut(s) 18, 185, 192, 266
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 2 cut(s) 6, 169
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 451
BstAPI GCANNNNNTGC 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 431
BstF5I GGATG 1 cut(s) 237
BstFNI CGCG 1 cut(s) 241
BstHHI GCGC 1 cut(s) 243
BstKTI GATC 2 cut(s) 9, 172
BstMBI GATC 2 cut(s) 6, 169
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 2 cut(s) 233, 249
BstNI CCWGG 1 cut(s) 451
BstNSI RCATGY 2 cut(s) 134, 203
BstSCI CCNGG 2 cut(s) 252, 449
BstSFI CTRYAG 2 cut(s) 213, 337
BstSLI GKGCMC 1 cut(s) 254
BstUI CGCG 1 cut(s) 241
BsuRI GGCC 2 cut(s) 265, 348
BtgZI GCGATG 1 cut(s) 222
BtsCI GGATG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 475
Cac8I GCNNGC 1 cut(s) 431
CfoI GCGC 1 cut(s) 243
Cfr10I RCCGGY 1 cut(s) 344
Cfr13I GGNCC 2 cut(s) 189, 404
CspCI CAANNNNNGTGG 4 cut(s) 115, 150, 255, 290
CviAII CATG 2 cut(s) 131, 200
CviJI RGCY 7 cut(s) 58, 158, 184, 265, 280, 348, 439
CviKI_1 RGCY 7 cut(s) 58, 158, 184, 265, 280, 348, 439
DpnI GATC 2 cut(s) 8, 171
DpnII GATC 2 cut(s) 6, 169
DraI TTTAAA 1 cut(s) 96
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
EaeI YGGCCR 2 cut(s) 263, 346
EciI GGCGGA 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 72
Eco47I GGWCC 2 cut(s) 189, 404
EcoRII CCWGG 1 cut(s) 449
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 2 cut(s) 134, 203
FaiI YATR 3 cut(s) 132, 201, 312
FaqI GGGAC 1 cut(s) 30
FatI CATG 2 cut(s) 130, 199
FauI CCCGC 1 cut(s) 377
FblI GTMKAC 1 cut(s) 196
Fnu4HI GCNGC 1 cut(s) 308
FokI GGATG 1 cut(s) 244
Fsp4HI GCNGC 1 cut(s) 308
FspBI CTAG 1 cut(s) 159
GlaI GCGC 1 cut(s) 242
GluI GCNGC 1 cut(s) 308
GsuI CTGGAG 1 cut(s) 433
HaeIII GGCC 2 cut(s) 265, 348
HapII CCGG 4 cut(s) 254, 329, 345, 464
HhaI GCGC 1 cut(s) 243
Hin1II CATG 2 cut(s) 134, 203
Hin6I GCGC 1 cut(s) 241
HinP1I GCGC 1 cut(s) 241
HinfI GANTC 4 cut(s) 62, 68, 294, 454
HpaII CCGG 4 cut(s) 254, 329, 345, 464
HphI GGTGA 2 cut(s) 384, 409
Hpy166II GTNNAC 2 cut(s) 178, 197
Hpy188I TCNGA 3 cut(s) 11, 67, 404
Hpy188III TCNNGA 4 cut(s) 79, 283, 298, 458
Hpy8I GTNNAC 2 cut(s) 178, 197
Hpy99I CGWCG 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 2 cut(s) 29, 215
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 249
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 2 cut(s) 134, 203
HspAI GCGC 1 cut(s) 241
Kzo9I GATC 2 cut(s) 6, 169
LweI GCATC 3 cut(s) 38, 161, 245
MaeI CTAG 1 cut(s) 159
MaeII ACGT 1 cut(s) 324
MalI GATC 2 cut(s) 8, 171
MboI GATC 2 cut(s) 6, 169
MboII GAAGA 2 cut(s) 24, 39
MhlI GDGCHC 1 cut(s) 254
MlsI TGGCCA 1 cut(s) 265
MluCI AATT 1 cut(s) 422
MluNI TGGCCA 1 cut(s) 265
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 2 cut(s) 417, 460
Mox20I TGGCCA 1 cut(s) 265
MroXI GAANNNNTTC 1 cut(s) 440
MscI TGGCCA 1 cut(s) 265
MseI TTAA 1 cut(s) 95
Msp20I TGGCCA 1 cut(s) 265
MspA1I CMGCKG 1 cut(s) 58
MspI CCGG 4 cut(s) 254, 329, 345, 464
MspR9I CCNGG 2 cut(s) 254, 451
MvaI CCWGG 1 cut(s) 451
MvnI CGCG 1 cut(s) 241
MwoI GCNNNNNNNGC 2 cut(s) 233, 249
NciI CCSGG 1 cut(s) 254
NdeII GATC 2 cut(s) 6, 169
NlaIII CATG 2 cut(s) 134, 203
NlaIV GGNNCC 1 cut(s) 462
NspI RCATGY 2 cut(s) 134, 203
PcsI WCGNNNNNNNCGW 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 440
PfeI GAWTC 3 cut(s) 62, 294, 454
PfoI TCCNGGA 1 cut(s) 449
PkrI GCNGC 1 cut(s) 309
Ple19I CGATCG 1 cut(s) 172
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 449
PspGI CCWGG 1 cut(s) 449
PspN4I GGNNCC 1 cut(s) 462
PspPI GGNCC 2 cut(s) 189, 404
PstI CTGCAG 1 cut(s) 217
PvuI CGATCG 1 cut(s) 172
PvuII CAGCTG 1 cut(s) 58
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 1 cut(s) 308
Sau3AI GATC 2 cut(s) 6, 169
Sau96I GGNCC 2 cut(s) 189, 404
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 2 cut(s) 254, 451
SduI GDGCHC 1 cut(s) 254
SetI ASST 7 cut(s) 60, 282, 327, 338, 389, 400, 409
SfaNI GCATC 3 cut(s) 38, 161, 245
SfcI CTRYAG 2 cut(s) 213, 337
SinI GGWCC 2 cut(s) 189, 404
Sse9I AATT 1 cut(s) 422
SsiI CCGC 3 cut(s) 257, 307, 370
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 2 cut(s) 252, 449
StyI CCWWGG 1 cut(s) 72
TaiI ACGT 1 cut(s) 327
TaqI TCGA 5 cut(s) 110, 148, 168, 172, 284
TasI AATT 1 cut(s) 422
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 3 cut(s) 62, 294, 454
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
VpaK11BI GGWCC 2 cut(s) 189, 404
XapI RAATTY 1 cut(s) 422
XceI RCATGY 2 cut(s) 134, 203
XmiI GTMKAC 1 cut(s) 196
XmnI GAANNNNTTC 1 cut(s) 440
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.