Rmu_sc0005378.1_g000035

callose synthase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005378.1
Physical Location & Seq
Forward (+)
127322 .. 128540
1219 bp
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UTR
Exon/CDS
Intron
Rmu_sc0005378.1_g000035.1.cds

Sequence Viewer

Length: 681 bp
atggacactcagatatggtattctgttttttgcacaatctttggtggagtctatggcattttgcatcaccttggtgagattcgaactttgggaatgttgaggagtagatttcactccttgccttccgcattcaatatttctcttattccaccctcattgaggaatgaccaaaagagaagaagaggtttcttttacaataaattcagaaaggtatcaaagagtgaaaaaaatggtcttgccaagtttgtcttggtttggaaccaaattatcaatagttttcgattggaggacttgataaacaacagggagctggatttaatgacaatgccaatgtcttcagaattattttccggcatagttcgttggccagtttttcttcttgcaaataagttttcaactgccctgagtattgcaaaggattttgtggggagggatgaaagtcttgtcagaagacttaaaaaagatgagtacatgtactgtgctgtgaaggagtgctacgaatcattgaagtacatccttgaaatcctcattattggggatctcgaaaagaggattgtatctgccatactgactgaaattgaagaaagcatcacaagatcaagtcttcttgaggactttaggatgattaaagttccagatctttgggcagtgaaccttgtggacaaaatattcaagaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

226

Amino Acids

26.4

Weight (kDa)

9.32

Isoelectric Point (pI)

58.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021272)

Species Orthologous Gene IDs
pyrus_communis pycom09g06970
rosa_multiflora Rmu_sc0005378.1_g000035
rosa_samantha Rh6AG329000 Rh7AG299100 Rh7DG422600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 126
AclWI GGATC 1 cut(s) 546
AcoI YGGCCR 1 cut(s) 365
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 321
AfaI GTAC 3 cut(s) 470, 476, 512
AfiI CCNNNNNNNGG 1 cut(s) 159
AflIII ACRYGT 1 cut(s) 471
AgsI TTSAA 6 cut(s) 133, 396, 508, 521, 581, 673
AleI CACNNNNGTG 1 cut(s) 72
AluBI AGCT 1 cut(s) 310
AluI AGCT 1 cut(s) 310
AlwI GGATC 1 cut(s) 546
AoxI GGCC 1 cut(s) 365
ApoI RAATTY 1 cut(s) 200
AsuHPI GGTGA 2 cut(s) 59, 86
AsuII TTCGAA 1 cut(s) 82
BalI TGGCCA 1 cut(s) 367
BarI GAAGNNNNNNTAC 2 cut(s) 479, 511
BbsI GAAGAC 3 cut(s) 327, 457, 596
BglII AGATCT 1 cut(s) 637
BmiI GGNNCC 1 cut(s) 260
BmsI GCATC 2 cut(s) 73, 597
BpiI GAAGAC 3 cut(s) 327, 457, 596
Bpu14I TTCGAA 1 cut(s) 82
BpuEI CTTGAG 1 cut(s) 629
BsaJI CCNNGG 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse1I ACTGG 1 cut(s) 368
BseDI CCNNGG 1 cut(s) 70
BseGI GGATG 3 cut(s) 439, 513, 627
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMII CTCAG 2 cut(s) 23, 395
BseNI ACTGG 1 cut(s) 368
BseRI GAGGAG 1 cut(s) 115
BshFI GGCC 1 cut(s) 367
BsiSI CCGG 1 cut(s) 351
BslI CCNNNNNNNGG 1 cut(s) 159
BsmI GAATGC 1 cut(s) 128
BsnI GGCC 1 cut(s) 367
Bsp119I TTCGAA 1 cut(s) 82
Bsp143I GATC 3 cut(s) 538, 596, 637
BspACI CCGC 1 cut(s) 126
BspANI GGCC 1 cut(s) 367
BspCNI CTCAG 2 cut(s) 22, 396
BspLI GGNNCC 1 cut(s) 260
BspPI GGATC 1 cut(s) 546
BspT104I TTCGAA 1 cut(s) 82
BsrI ACTGG 1 cut(s) 368
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 3 cut(s) 538, 596, 637
BssT1I CCWWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 479
Bst6I CTCTTC 1 cut(s) 175
BstBI TTCGAA 1 cut(s) 82
BstDEI CTNAG 2 cut(s) 9, 404
BstENI CCTNNNNNAGG 1 cut(s) 157
BstF5I GGATG 3 cut(s) 439, 513, 627
BstKTI GATC 3 cut(s) 541, 599, 640
BstMBI GATC 3 cut(s) 538, 596, 637
BstNSI RCATGY 1 cut(s) 475
BstV2I GAAGAC 3 cut(s) 327, 457, 596
BstX2I RGATCY 2 cut(s) 538, 637
BstXI CCANNNNNNTGG 1 cut(s) 642
BstYI RGATCY 2 cut(s) 538, 637
BsuRI GGCC 1 cut(s) 367
BtsCI GGATG 3 cut(s) 439, 513, 627
BtsI GCAGTG 1 cut(s) 654
BtsIMutI CAGTG 1 cut(s) 654
Csp6I GTAC 3 cut(s) 469, 475, 511
CspCI CAANNNNNGTGG 2 cut(s) 138, 173
CviAII CATG 1 cut(s) 472
CviJI RGCY 2 cut(s) 310, 367
CviKI_1 RGCY 2 cut(s) 310, 367
CviQI GTAC 3 cut(s) 469, 475, 511
DdeI CTNAG 2 cut(s) 9, 404
DpnI GATC 3 cut(s) 540, 598, 639
DpnII GATC 3 cut(s) 538, 596, 637
EaeI YGGCCR 1 cut(s) 365
Eam1104I CTCTTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 321
EcoNI CCTNNNNNAGG 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 1 cut(s) 475
FaiI YATR 5 cut(s) 16, 54, 356, 473, 566
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FatI CATG 1 cut(s) 471
FokI GGATG 3 cut(s) 446, 500, 634
HaeIII GGCC 1 cut(s) 367
HapII CCGG 1 cut(s) 351
Hin1II CATG 1 cut(s) 475
HinfI GANTC 3 cut(s) 48, 79, 500
HpaII CCGG 1 cut(s) 351
HphI GGTGA 2 cut(s) 59, 86
Hpy166II GTNNAC 2 cut(s) 652, 661
Hpy188I TCNGA 4 cut(s) 12, 206, 340, 449
Hpy188III TCNNGA 4 cut(s) 542, 608, 635, 673
Hpy8I GTNNAC 2 cut(s) 652, 661
HpyAV CCTTC 2 cut(s) 132, 481
HpyCH4III ACNGT 1 cut(s) 479
HpyCH4V TGCA 4 cut(s) 33, 64, 383, 413
HpyF3I CTNAG 2 cut(s) 9, 404
Hsp92II CATG 1 cut(s) 475
Kzo9I GATC 3 cut(s) 538, 596, 637
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 6 cut(s) 289, 296, 364, 381, 416, 648
LweI GCATC 2 cut(s) 73, 597
MalI GATC 3 cut(s) 540, 598, 639
MboI GATC 3 cut(s) 538, 596, 637
MboII GAAGA 7 cut(s) 189, 192, 327, 368, 462, 593, 596
MflI RGATCY 2 cut(s) 538, 637
MlsI TGGCCA 1 cut(s) 367
MluCI AATT 4 cut(s) 200, 264, 341, 576
MluNI TGGCCA 1 cut(s) 367
MlyI GAGTC 1 cut(s) 57
MnlI CCTC 9 cut(s) 93, 153, 163, 176, 280, 423, 536, 543, 604
Mox20I TGGCCA 1 cut(s) 367
MscI TGGCCA 1 cut(s) 367
MseI TTAA 3 cut(s) 317, 456, 627
MslI CAYNNNNRTG 1 cut(s) 72
Msp20I TGGCCA 1 cut(s) 367
MspI CCGG 1 cut(s) 351
Mva1269I GAATGC 1 cut(s) 128
NdeII GATC 3 cut(s) 538, 596, 637
NlaIII CATG 1 cut(s) 475
NlaIV GGNNCC 1 cut(s) 260
NspI RCATGY 1 cut(s) 475
NspV TTCGAA 1 cut(s) 82
OliI CACNNNNGTG 1 cut(s) 72
PciI ACATGT 1 cut(s) 471
PctI GAATGC 1 cut(s) 128
PfeI GAWTC 2 cut(s) 79, 500
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PscI ACATGT 1 cut(s) 471
PspN4I GGNNCC 1 cut(s) 260
PsuI RGATCY 2 cut(s) 538, 637
RsaI GTAC 3 cut(s) 470, 476, 512
RsaNI GTAC 3 cut(s) 469, 475, 511
RseI CAYNNNNRTG 1 cut(s) 72
SaqAI TTAA 3 cut(s) 317, 456, 627
Sau3AI GATC 3 cut(s) 538, 596, 637
SchI GAGTC 1 cut(s) 57
SetI ASST 5 cut(s) 72, 187, 213, 312, 657
SfaNI GCATC 2 cut(s) 73, 597
SfuI TTCGAA 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
Sse9I AATT 4 cut(s) 200, 264, 341, 576
SsiI CCGC 1 cut(s) 126
SspI AATATT 2 cut(s) 136, 669
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 479
TaqI TCGA 3 cut(s) 82, 280, 543
TasI AATT 4 cut(s) 200, 264, 341, 576
TatI WGTACW 3 cut(s) 468, 474, 510
TfiI GAWTC 2 cut(s) 79, 500
Tru1I TTAA 3 cut(s) 317, 456, 627
Tru9I TTAA 3 cut(s) 317, 456, 627
TscAI CASTG 1 cut(s) 654
TspDTI ATGAA 1 cut(s) 450
TspRI CASTG 1 cut(s) 654
XagI CCTNNNNNAGG 1 cut(s) 157
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 475
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.