Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005381.1

Orthogroup ID

OG0008053

Physical Location & Seq

Genomic Coordinates Forward (+)

11926 .. 33604

Gene Structure 21679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 7524 bp

atgggtgctcacactcttgagaccgtttcagtgagggaagttatggcatttcggtttgacttgttgctgcttctgggtttgctcgtttgtgtgagctttggtaatgtggattcagatgaaggagcaacactgctggagataaagaagtcgtttagggatgtggacaatgttctatacgactggagagactcaccgtctttagactattgtgtttggagaggcgtcacatgtgacaatgtcaccttcaatgtcatagcactcaatctatcaggtctaaatcttgatggagaaatctcacctgcaataggaaatctcaagggcctccagtccattgatttgagagggaaccgactttcaggccagatcccagatgagattggtgactgttcgtctctgagatacctggacctgtccttcaatgagatatatggagacatcccattttcaatatccaagttgaagcaactggaaagcataatgttgaaaaataatcagttgattggaccactcccttcaacactgtcccagattccgaacctgaagatgttagacctagcccagaataatctcagtggggaaataccaaggcttatttactggaatgaagttctacaatatcttggtttgcgaggaaacaatttagttgggaaactttctccagatatgtgccagttaactgggttatggtattttgatgtgcgaaacaacagtttgaccggtagtattcctcaaaatatagggaactgcactgccttccaagtcttggacctgtcctataaccagctaactggagagattcctttcaacattgggttcctgcaagtagccaccttatcattgcagggtaatcaactttctgggcctatcccttccgttattggcctgatgcaggcactcgctgtattagatttgagtggcaacatgctaagtggaccgattcctcctattctggggaatttgacttatacagagaaattgtacttgcatgccaacaagcttacaggatcaattcccccagagctcggacaaatggcacaacttcattatttggtgttgaatgataaccatcttactggacaaattccacctgaacttgggaagcttaccaacttgtttgacctaaatgttgctaacaacaatcttcaagggcccatccctgataatattagctcatgtacaaatctcaacaccctcaatgtgcatgggaacaaattgaatggaaccatcccgcctgctctccagaggctggagagtatgacttatctaaatctgtcctccaacaatcttcgtggctcaataccaattgagctatctcggattggcaatttggatactttggatctttctaataacaagtttactggatccataccttcttcgcttggtgatttggaacatcttcttaagctgaatttgagtagaaatcatatgacaggttttattccagcagagtttggtaatctaaggagtgttgtggacatagatctttcaaataatcggctcacaggaatgattcctcaggagctcagtcagctgcagaatttgttctcattgaggctagagcacaacaatatatcaggggaagtggtgtctttgatcaattgcctcagtcttgcagtgctaaatgtgtcttataacaacctggcgggagatattccgacatccaataacttctctaggttttcatccgacagctttgttggaaatcctgatctttgtggctattggctcaattctccgtgtcatgagtcccgtccaacagagagagttgcattatctaaagcggctatcctgggcattgctcttggtgcccttgtgattcttctcatgatccttattgctgcctgccgcccttaccatccaactccttttcctgacggtacacttgacaaaccagttaattactcaacaccaaagctagtgattcttaacatgaatatggcacttcatgtgtatgaggatatcatgaggatgactgaaaacttgagtgagaaatatataattggttatggcgcatcaagcacggtatacaaatgtgttcttaagaattgtaagccagtggcgatcaagagactctactctcattatccacagtgcttgaaggaatttgagacagaacttggaacagttggcagcatcaagcatcgaaatctagtcagcctccaaggatactccttgtcttcttctggaaaccttctcttttatgattacatggaaaatggcagtctctgggatctccttcatggcccaactaccaagaagaagaagcttgactgggaaactcgtatccagatagcactcggagcagcccaagggcttgcctatctccatcatgattgtagtccacgtatcatacacagggatgtgaagtcgtctaacattctgttggacaaggatttcgaggctcatttaactgattttggtattgccaagagcttatgcacgtcaaagacccatacatctacttgtgtaatgggcaccattggctacatagaccccgagtatgctcgaacttcccgcctcactgagaagtcggacgtttatagttatgggattgtcctgctggagttgctaacagggaggaaggctgtagacaatgaatgcaatctccatcaattgatcttatcaaagacagcgaacaatgctgtgatggaaactgttgatccagagatcatggccacatgcatggaccttggagcagtgaagaaggtttttcagcttgcactcctatgcacaaagaggcagccaacagaccggccaactatgcatgaaataacacgagttttgggtagccttttgccatcacctacactgccgaaacaagcaaccctcaatcctccatccactacactctcatctgtgaaagcgccgtgctacgtggatgagtatgcaaacctcaaaaccccacacatgctcaattgcccatctatgagtacctcagacgcccagctctttctcaagtttggagagggcgccaaggtctggctcgaggaccgcgattcggcgtgggtgccggccgaggtcgccgacttcaaaggcaagcaagtccagctcgtcgccgcctccgggaagaaggttttggcttcgccggagaagctgtttccgagggacgccgacgaggacgagcatgggggagttgatgacatgaccaaattgacgtatttgaacgagccgggagtgctttacaatcttcggaggagatatgctctcaatgatatatatacatatacagggagcattttgattgcagttaatccattcactaagcttccccatctatacaatgtacatatgatggagcaatataggggagctccttttggcgagctaagtccccatgtttttgctgtggctgatgcgtcttatagagcaatgacgactgagggtcgaagccaatcaatacttgtcagtggtgaaagtggagctgggaaaacagagacgacaaaactgattatgcagtatcttacttatgtaggaggccgagctgctagtgatgagagaactgttgagcaacaagttcttgaatcaaatcccctgctggaggcttttggaaatgcgaggactgttagaaatgacaattcaagtcgttttggcaagtttgttgagattcagttcgatgcaaatgggagaatatctggagctgcaattagaacttacctgttggaaagatcccgtgttgtgcagataacagaccctgaaaggaattaccactgtttttaccaattgtgcgcatctggaaaggatgcagaaaagtacaagttaggccatccaagccactttcactacctgaatcaaagcaagacatatgaactggatggagtgagcaatgcggaagaatatatgaagacaagaacagcaatggatattgttggcatcagccacaaagagcaggaagcaatatttcgcaccttggctgcaattctacatttgggaaatgttgaattttctcctggaaaagagcacgactcttcagttctaaaggatcagacatccagctttcatatgcagatggctgctaatctttttatgtgtgatgaaaacctcttgttagcaacattatctactcgtacaatccaaactcgtgaaggaattattattaaagctcttgactgcaatggtgctgtttctagtagagatgcattggcaaagactgtttatgcacgattgtttgactggcttgtcgagaagattaataggtctgttgggcaagacttgaattcccaaatgcagataggagtattggacatttatggttttgaatgctttaaagacaacagttttgagcaattttgcattaattttgcaaacgagaagctgcagcaacattttaatgagcatgtattcaagatggagcaggaggagtatagcaaagaggaaatcgattggagctacattgaattcatagacaaccaagatgttctagatttgatagagaagaaacctcttgggataattgctctgttggatgaagcttgcatgttcccgaaatcaacacaccacacattttcaaccaggttgtttcagagtttccgggaccacccaaggtgggagaaggcaaaattttcggagacggattttaccttgtcccattatgctggaaaggtcacttatcacacagatttctttttggataaaaaccgtgattatgttgtggtagatcattgcaatcttttgtcttcctcgaaatgcccctttgttgctgatcttttctgctcactacctgaagaatcttcaagatcatcgtacaagttttcttctgtagccactagatttaagcaacaacttcaagcattgatggaaaccctcaatacaacagagcctcattatgtacgctgtgttaagccaaactcattgaatcgaccgcagaaatttgagaatctgagcatcttacatcaattacgttgtgggggtgttttagaggctgttcggataagtctggcaggttatcccacacgtagaacttactcagagtttgtagatcgttttggattattagctcctgaattaatggaaataagctatgatgaaaaatctacaactgagaaaattctgaagaatttgaagcttgagaattttcagttgggtaggaccaaagtgtttcttagggctggtcaaattggtgttttggactccagacgcactgaggtcttggacaatgctgcaaagcgtattcaatgtcagttgcgaacattcgttgctcgcaggaattttgtttcaactcgagctgctgcattagcacttcaagctttttgtagaggattccttgctagagcactttatgctttaaaacgagagacagctgctgctattttcgtacagaaacatgtccgaagttggctattgaggcatgcgtatgttgaattatattcagctgctgttaccatacagtccaatattcgtggtttttcaacccgccaaagatttgtgcatggaaaaaaacataaagctgcaactatgatacaggctcggtggaggatgcgcaaggttcgctcagctttccaacaccatcaagcttctattgtagcaatacaatgtctttggaggcggaagttggctaagagagagcttcgaaagcttaaacaactggcaaatgaaagtggtgccttacgtttagctaagactaaacttgagaagcaattggaagatctcacttggcgattgcatcttgagaaaagaatgcgggtttctaatgaagaagctaagtcagcagaaattttaaggcttcagacagtggtggaatctttgaaccttgagttagaggcatcaaacctggcaacaattaatgagtgcaacaagaatgcagtgctacagaatcaattggaactgtcagggaaagaaaaatcttctttggaaagagaactcaaggatatggctgaattgagaaaggaaaatgcagttttaaaaagttctttggatgctttggataagaagaattctcatatgcagaatgagctttgcaaggctcagaaaaacagtaatgacaccattcaaaagctgcaggaatttgaacacaagtgttatgatctccaacagaatgtaaacagtcttaaggagaaactctcggttttagaggatgagaatcacatcatgcgacaaaaagcccttgctgtgtctccaaagagcaatcgacgtggttatgaaaaggcatcagttcccgagaagaactctggtgcacttgttccccacactgatcgaaagcctgaatttgagtcacccacaccttcaaaacttataacacccttttcacatggcctgtccgaatcacggcaaacaaagttagcagtggagaggcaccaggagaactatgaattcctatcaaggtgtattaaagaggatattgggtttaaagacagtaaaccatcggcggcttgtatcatatacaaatgccttcttcagtggcatgcttttgagtctgagcggacagttatttttgatcatataattgaggggataaatgatgttctgagggttggggatgagaacattaccttgccatattggctatccaatgcctcagcacttctatgtctactgcagaggaatttaagaccaaatggtttcccagcaactcagcgttcagctgggtcttccagtttagctcttaggattgcgcatggactgacatcaccatttaaacaaggagatggtatgtcacatttagaagcaagatatccagctatactgttcaaacaacagcttactgcttgcgtagaaaaaatatttggcttgatgcgtgacagtttgaagaaggagttggctccactattgggatcatgcattcaggcacccaaagctgcacgagttcatgctgggaagtctagatcacctggtaatgctcctcaacaattgcctgggagtcagtgggacaacataatcaagtttctggataaccttatgattcgattacgtggaaatcatgtaccttcatttttcattcgtaagctaattacacaggtcttttcgttcatcaatatgtcacttttcaacagtctgcttctgcgacgtgagtgttgcacattttcgaatggagaatatgtaaaatcaggtctagctgaactggagaagtggattgtcaacacaggggatgagtttgtaggaacctcctggcacgagctaaattatattaggcaagctgttggttttctggtgattcatcagaagaggagaaaatctctggatgagattaggcaggacctttgtccggcattgacaattaggcaaatctatcgaattagtaccatgtactgggatgacaaatatggcacacagagtgtgtccaatgaggtggttgctcaaatgagggagcttttgaacaaggacaaccagaatctaacctccaattcattcctattggatgatgatctaagcattccattctctacggaagatattgacaaggcaatcccgcttattgatccttcagatatcgaaattccatcttccttgtctggttattcttgtgttcagtttcttgtccagcaccagaatgaaatagtccgttcgtcccaagtagttgctgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000146 GO:0000166 GO:0000331 GO:0003674 GO:0003774 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0005856 GO:0006810 GO:0006928 GO:0007097 GO:0008092 GO:0008144 GO:0008150 GO:0008360 GO:0009987 GO:0012505 GO:0015629 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022603 GO:0022604 GO:0030029 GO:0030048 GO:0030554 GO:0030898 GO:0031090 GO:0031410 GO:0031965 GO:0031967 GO:0031975 GO:0031982 GO:0032553 GO:0032555 GO:0032559 GO:0032878 GO:0033275 GO:0035639 GO:0036094 GO:0042623 GO:0042641 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043531 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046907 GO:0050789 GO:0050793 GO:0050794 GO:0051015 GO:0051128 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:0065007 GO:0065008 GO:0070252 GO:0097159 GO:0097367 GO:0097708 GO:0140027 GO:1901265 GO:1901363 GO:2000769

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DIL IQ Myosin_N Myosin_head

Protein Analysis

2507

Amino Acids

281.84

Weight (kDa)

7.7

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	38 - 78	2e-09	Leucine rich repeat N-terminal domain
LRR_8	PF13855	393 - 453	1.4e-06	Leucine rich repeat
LRR_8	PF13855	442 - 501	4.2e-09	Leucine rich repeat
LRR_8	PF13855	466 - 525	6.3e-08	Leucine rich repeat
Pkinase	PF00069	665 - 926	1.3e-41	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	667 - 928	2.9e-40	Protein tyrosine and serine/threonine kinase
Myosin_head	PF00063	1046 - 1702	2.1e-252	Myosin head (motor domain)
DIL	PF01843	2315 - 2418	2.5e-27	DIL domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33200 AT4G33200 AT4G33200 AT4G33200
fragaria_vesca	FvH4_2g30900
malus_domestica	MD08G1072000.v1.1 MD15G1049200.v1.1
prunus_persica	Prupe.1G403500_v2.0.a1 Prupe.1G403500_v2.0.a1 Prupe.1G403500_v2.0.a1 Prupe.1G403500_v2.0.a1
pyrus_communis	pycom08g05980 pycom08g05990 pycom15g04800
rosa_chinensis	RchiOBHm_Chr6g0311941
rosa_laevigata	RLG00000010367
rosa_multiflora	Rmu_sc0005381.1_g000002
rosa_roxburghii	Rroxscaffold_7G00157200
rosa_rugosa	Rorug06G0391500
rosa_samantha	Rh6AG508000 Rh6BG519200 Rh6CG524900 Rh6DG510500
rosa_wichuraiana	Rw6G044220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1635, 6233
AarI	CACCTGC	1 cut(s)	307
AasI	GACNNNNNNGTC	1 cut(s)	4178
Acc16I	TGCGCA	3 cut(s)	3730, 5480, 6612
Acc36I	ACCTGC	2 cut(s)	307, 4931
AccB1I	GGYRCC	7 cut(s)	1808, 2477, 2972, 3010, 5600, 6291, 6784
AccB7I	CCANNNNNTGG	4 cut(s)	763, 1246, 2982, 7245
AccBSI	CCGCTC	1 cut(s)	6418
AccI	GTMKAC	3 cut(s)	2028, 2592, 6529
AccII	CGCG	1 cut(s)	2997
AcoI	YGGCCR	3 cut(s)	2676, 2756, 3015
AcuI	CTGAAG	7 cut(s)	560, 3954, 4743, 5072, 5708, 6377, 7404
AcyI	GRCGYC	4 cut(s)	222, 2943, 2973, 3111
AdeI	CACNNNGTG	1 cut(s)	7271
AflII	CTTAAG	3 cut(s)	1403, 2042, 6047
AflIII	ACRYGT	3 cut(s)	227, 4952, 5323
AgeI	ACCGGT	1 cut(s)	716
AhdI	GACNNNNNGTC	3 cut(s)	193, 388, 3384
AjiI	CACGTC	3 cut(s)	2445, 6131, 7004
AjuI	GAANNNNNNNTTGG	8 cut(s)	3062, 3094, 5063, 5095, 6705, 6737, 6737, 6769
Alw21I	GWGCWC	8 cut(s)	10, 1023, 1527, 1566, 3316, 3963, 5275, 6175
Alw44I	GTGCAC	1 cut(s)	6171
AlwNI	CAGNNNCTG	5 cut(s)	1246, 2229, 3695, 5303, 5375
Ama87I	CYCGRG	4 cut(s)	2498, 2987, 5220, 6155
ApaI	GGGCCC	1 cut(s)	1152
ApaLI	GTGCAC	1 cut(s)	6171
ArsI	GACNNNNNNTTYG	4 cut(s)	2381, 2413, 4262, 4294
AseI	ATTAAT	4 cut(s)	4191, 4296, 5006, 5781
AsiGI	ACCGGT	1 cut(s)	716
Asp700I	GAANNNNTTC	2 cut(s)	1398, 1544
AspLEI	GCGC	6 cut(s)	2015, 2869, 2975, 3731, 5481, 6613
AsuC2I	CCSGG	3 cut(s)	3067, 3174, 4532
AsuII	TTCGAA	2 cut(s)	5569, 7022
AvaI	CYCGRG	4 cut(s)	2498, 2987, 5220, 6155
AvaII	GGWCC	9 cut(s)	406, 503, 766, 932, 2689, 2992, 4534, 5088, 7192
AxyI	CCTNAGG	1 cut(s)	1518
BaeGI	GKGCMC	4 cut(s)	1152, 1813, 2480, 6175
BalI	TGGCCA	1 cut(s)	2678
BamHI	GGATCC	1 cut(s)	1364
BanI	GGYRCC	7 cut(s)	1808, 2477, 2972, 3010, 5600, 6291, 6784
BanII	GRGCYC	4 cut(s)	1023, 1152, 1527, 3316
BauI	CACGAG	4 cut(s)	2778, 4080, 6798, 7109
BbsI	GAAGAC	4 cut(s)	2172, 3851, 4668, 6579
Bbv12I	GWGCWC	8 cut(s)	10, 1023, 1527, 1566, 3316, 3963, 5275, 6175
BbvCI	CCTCAGC	1 cut(s)	6514
BceAI	ACGGC	2 cut(s)	2854, 6281
BcgI	CGANNNNNNTGC	4 cut(s)	4545, 4579, 7208, 7242
BciVI	GTATCC	3 cut(s)	1324, 2162, 2297
BclI	TGATCA	2 cut(s)	1596, 6433
BcnI	CCSGG	3 cut(s)	3067, 3174, 4532
BfmI	CTRYAG	7 cut(s)	1535, 2589, 4316, 4758, 5807, 5996, 6533
BfoI	RGCGCY	2 cut(s)	2870, 2976
BfrI	CTTAAG	3 cut(s)	1403, 2042, 6047
BfuAI	ACCTGC	2 cut(s)	307, 4931
BfuI	GTATCC	3 cut(s)	1324, 2162, 2297
BglI	GCCNNNNNGGC	1 cut(s)	6499
BglII	AGATCT	2 cut(s)	1483, 5644
BlpI	GCTNAGC	1 cut(s)	5491
Bme18I	GGWCC	9 cut(s)	406, 503, 766, 932, 2689, 2992, 4534, 5088, 7192
BmeRI	GACNNNNNGTC	3 cut(s)	193, 388, 3384
BmeT110I	CYCGRG	4 cut(s)	2498, 2987, 5220, 6155
BmgBI	CACGTC	3 cut(s)	2445, 6131, 7004
BmrI	ACTGGG	3 cut(s)	687, 2284, 7255
BmuI	ACTGGG	3 cut(s)	687, 2284, 7255
BoxI	GACNNNNGTC	1 cut(s)	7197
BpiI	GAAGAC	4 cut(s)	2172, 3851, 4668, 6579
Bpu10I	CCTNAGC	1 cut(s)	6514
Bpu1102I	GCTNAGC	1 cut(s)	5491
Bpu14I	TTCGAA	2 cut(s)	5569, 7022
BpuEI	CTTGAG	9 cut(s)	38, 299, 2005, 2942, 5087, 5648, 5687, 5771, 5846
BpuMI	CCSGG	3 cut(s)	3067, 3174, 4532
Bsa29I	ATCGAT	1 cut(s)	4380
BsaAI	YACGTR	4 cut(s)	2348, 2878, 4955, 6908
BsaBI	GATNNNNATC	3 cut(s)	1065, 6078, 7359
BsaHI	GRCGYC	4 cut(s)	222, 2943, 2973, 3111
BsaI	GGTCTC	1 cut(s)	14
BsaWI	WCCGGW	1 cut(s)	716
BsaXI	ACNNNNNCTCC	4 cut(s)	3083, 3113, 7020, 7050
Bse118I	RCCGGY	3 cut(s)	716, 2754, 3013
Bse21I	CCTNAGG	1 cut(s)	1518
Bse3DI	GCAATG	7 cut(s)	836, 1797, 3378, 3832, 3864, 4120, 4660
Bse8I	GATNNNNATC	3 cut(s)	1065, 6078, 7359
BseCI	ATCGAT	1 cut(s)	4380
BseJI	GATNNNNATC	3 cut(s)	1065, 6078, 7359
BseMI	GCAATG	7 cut(s)	836, 1797, 3378, 3832, 3864, 4120, 4660
BseRI	GAGGAG	4 cut(s)	3211, 4373, 6828, 7177
BseSI	GKGCMC	4 cut(s)	1152, 1813, 2480, 6175
BseX3I	CGGCCG	1 cut(s)	3015
BseYI	CCCAGC	5 cut(s)	2946, 3425, 6562, 6581, 6809
BsgI	GTGCAG	3 cut(s)	730, 3701, 6780
Bsh1236I	CGCG	1 cut(s)	2997
Bsh1285I	CGRYCG	2 cut(s)	3018, 4862
BshNI	GGYRCC	7 cut(s)	1808, 2477, 2972, 3010, 5600, 6291, 6784
BshTI	ACCGGT	1 cut(s)	716
BshVI	ATCGAT	1 cut(s)	4380
BsiEI	CGRYCG	2 cut(s)	3018, 4862
BsiHKAI	GWGCWC	8 cut(s)	10, 1023, 1527, 1566, 3316, 3963, 5275, 6175
BsiHKCI	CYCGRG	4 cut(s)	2498, 2987, 5220, 6155
BsiSI	CCGG	8 cut(s)	717, 2755, 3014, 3066, 3089, 3173, 4531, 7202
BslFI	GGGAC	8 cut(s)	508, 1735, 3122, 3318, 4547, 4570, 6878, 7489
BsmBI	CGTCTC	3 cut(s)	396, 3431, 4562
BsmFI	GGGAC	8 cut(s)	508, 1735, 3122, 3318, 4547, 4570, 6878, 7489
BsmI	GAATGC	6 cut(s)	2606, 4265, 5682, 5803, 6777, 7368
Bso31I	GGTCTC	1 cut(s)	14
BsoBI	CYCGRG	4 cut(s)	2498, 2987, 5220, 6155
Bsp119I	TTCGAA	2 cut(s)	5569, 7022
Bsp120I	GGGCCC	1 cut(s)	1148
Bsp1407I	TGTACA	2 cut(s)	1175, 3286
Bsp1720I	GCTNAGC	1 cut(s)	5491
BspDI	ATCGAT	1 cut(s)	4380
BspFNI	CGCG	1 cut(s)	2997
BspHI	TCATGA	4 cut(s)	1744, 1827, 1965, 2332
BspMAI	CTGCAG	4 cut(s)	1539, 4320, 6000, 6537
BspMI	ACCTGC	2 cut(s)	307, 4931
BspT104I	TTCGAA	2 cut(s)	5569, 7022
BspT107I	GGYRCC	7 cut(s)	1808, 2477, 2972, 3010, 5600, 6291, 6784
BspTI	CTTAAG	3 cut(s)	1403, 2042, 6047
BspTNI	GGTCTC	1 cut(s)	14
BsrBI	CCGCTC	1 cut(s)	6418
BsrDI	GCAATG	7 cut(s)	836, 1797, 3378, 3832, 3864, 4120, 4660
BsrFI	RCCGGY	3 cut(s)	716, 2754, 3013
BsrGI	TGTACA	2 cut(s)	1175, 3286
BssAI	RCCGGY	3 cut(s)	716, 2754, 3013
BssNAI	GTATAC	1 cut(s)	2029
BssNI	GRCGYC	4 cut(s)	222, 2943, 2973, 3111
BssSI	CACGAG	4 cut(s)	2778, 4080, 6798, 7109
BssT1I	CCWWGG	7 cut(s)	584, 2164, 2311, 2692, 2976, 3909, 4541
Bst1107I	GTATAC	1 cut(s)	2029
Bst2BI	CACGAG	4 cut(s)	2778, 4080, 6798, 7109
Bst6I	CTCTTC	2 cut(s)	3973, 7154
BstACI	GRCGYC	4 cut(s)	222, 2943, 2973, 3111
BstAFI	CTTAAG	3 cut(s)	1403, 2042, 6047
BstAPI	GCANNNNNTGC	1 cut(s)	5279
BstAUI	TGTACA	2 cut(s)	1175, 3286
BstBAI	YACGTR	4 cut(s)	2348, 2878, 4955, 6908
BstBI	TTCGAA	2 cut(s)	5569, 7022
BstENI	CCTNNNNNAGG	3 cut(s)	303, 887, 3539
BstFNI	CGCG	1 cut(s)	2997
BstH2I	RGCGCY	2 cut(s)	2870, 2976
BstHHI	GCGC	6 cut(s)	2015, 2869, 2975, 3731, 5481, 6613
BstMCI	CGRYCG	2 cut(s)	3018, 4862
BstPAI	GACNNNNGTC	1 cut(s)	7197
BstSFI	CTRYAG	7 cut(s)	1535, 2589, 4316, 4758, 5807, 5996, 6533
BstSLI	GKGCMC	4 cut(s)	1152, 1813, 2480, 6175
BstUI	CGCG	1 cut(s)	2997
BstV2I	GAAGAC	4 cut(s)	2172, 3851, 4668, 6579
BstX2I	RGATCY	7 cut(s)	363, 1339, 1364, 1483, 2233, 3668, 5644
BstXI	CCANNNNNNTGG	6 cut(s)	677, 788, 1073, 2686, 4595, 7285
BstYI	RGATCY	7 cut(s)	363, 1339, 1364, 1483, 2233, 3668, 5644
BstZ17I	GTATAC	1 cut(s)	2029
BstZI	CGGCCG	1 cut(s)	3015
Bsu15I	ATCGAT	1 cut(s)	4380
Bsu36I	CCTNAGG	1 cut(s)	1518
BsuI	GTATCC	3 cut(s)	1324, 2162, 2297
BsuTUI	ATCGAT	1 cut(s)	4380
BtrI	CACGTC	3 cut(s)	2445, 6131, 7004
BtsI	GCAGTG	7 cut(s)	128, 747, 1623, 2706, 2810, 5808, 6288
BveI	ACCTGC	2 cut(s)	307, 4931
CaiI	CAGNNNCTG	5 cut(s)	1246, 2229, 3695, 5303, 5375
CciI	TCATGA	4 cut(s)	1744, 1827, 1965, 2332
CfoI	GCGC	6 cut(s)	2015, 2869, 2975, 3731, 5481, 6613
Cfr10I	RCCGGY	3 cut(s)	716, 2754, 3013
ClaI	ATCGAT	1 cut(s)	4380
CseI	GACGC	5 cut(s)	211, 2951, 3119, 3348, 5145
CsiI	ACCWGGT	2 cut(s)	4511, 6826
CspAI	ACCGGT	1 cut(s)	716
CspCI	CAANNNNNGTGG	8 cut(s)	1270, 1305, 2079, 2114, 5380, 5415, 6112, 6147
DinI	GGCGCC	1 cut(s)	2974
DraI	TTTAAA	5 cut(s)	4267, 5286, 5901, 6346, 6634
DraIII	CACNNNGTG	1 cut(s)	7271
DrdI	GACNNNNNNGTC	1 cut(s)	4178
DriI	GACNNNNNGTC	3 cut(s)	193, 388, 3384
DseDI	GACNNNNNNGTC	1 cut(s)	4178
EaeI	YGGCCR	3 cut(s)	2676, 2756, 3015
EagI	CGGCCG	1 cut(s)	3015
Eam1104I	CTCTTC	2 cut(s)	3973, 7154
Eam1105I	GACNNNNNGTC	3 cut(s)	193, 388, 3384
EarI	CTCTTC	2 cut(s)	3973, 7154
EciI	GGCGGA	1 cut(s)	5560
Ecl136II	GAGCTC	3 cut(s)	1021, 1525, 3314
EclXI	CGGCCG	1 cut(s)	3015
Eco130I	CCWWGG	7 cut(s)	584, 2164, 2311, 2692, 2976, 3909, 4541
Eco24I	GRGCYC	4 cut(s)	1023, 1152, 1527, 3316
Eco31I	GGTCTC	1 cut(s)	14
Eco32I	GATATC	3 cut(s)	1963, 6671, 7426
Eco47I	GGWCC	9 cut(s)	406, 503, 766, 932, 2689, 2992, 4534, 5088, 7192
Eco52I	CGGCCG	1 cut(s)	3015
Eco53kI	GAGCTC	3 cut(s)	1021, 1525, 3314
Eco57I	CTGAAG	7 cut(s)	560, 3954, 4743, 5072, 5708, 6377, 7404
Eco81I	CCTNAGG	1 cut(s)	1518
Eco88I	CYCGRG	4 cut(s)	2498, 2987, 5220, 6155
EcoICRI	GAGCTC	3 cut(s)	1021, 1525, 3314
EcoNI	CCTNNNNNAGG	3 cut(s)	303, 887, 3539
EcoO109I	RGGNCCY	3 cut(s)	319, 1148, 7192
EcoRI	GAATTC	4 cut(s)	4216, 4397, 5932, 6308
EcoRV	GATATC	3 cut(s)	1963, 6671, 7426
EcoT14I	CCWWGG	7 cut(s)	584, 2164, 2311, 2692, 2976, 3909, 4541
EcoT22I	ATGCAT	4 cut(s)	2687, 2769, 4141, 6779
EcoT38I	GRGCYC	4 cut(s)	1023, 1152, 1527, 3316
EgeI	GGCGCC	1 cut(s)	2974
EheI	GGCGCC	1 cut(s)	2974
ErhI	CCWWGG	7 cut(s)	584, 2164, 2311, 2692, 2976, 3909, 4541
Esp3I	CGTCTC	3 cut(s)	396, 3431, 4562
FalI	AAGNNNNNCTT	2 cut(s)	5085, 5117
FaqI	GGGAC	8 cut(s)	508, 1735, 3122, 3318, 4547, 4570, 6878, 7489
FauI	CCCGC	6 cut(s)	1236, 1639, 2525, 5420, 5673, 7413
FauNDI	CATATG	5 cut(s)	1428, 3291, 3805, 4002, 5940
FbaI	TGATCA	2 cut(s)	1596, 6433
FblI	GTMKAC	3 cut(s)	2028, 2592, 6529
FriOI	GRGCYC	4 cut(s)	1023, 1152, 1527, 3316
FspAI	RTGCGCAY	1 cut(s)	3730
FspI	TGCGCA	3 cut(s)	3730, 5480, 6612
GlaI	GCGC	6 cut(s)	2014, 2868, 2974, 3730, 5480, 6612
GsaI	CCCAGC	5 cut(s)	2950, 3429, 6566, 6585, 6813
HaeII	RGCGCY	2 cut(s)	2870, 2976
HapII	CCGG	8 cut(s)	717, 2755, 3014, 3066, 3089, 3173, 4531, 7202
HgaI	GACGC	5 cut(s)	211, 2951, 3119, 3348, 5145
HhaI	GCGC	6 cut(s)	2015, 2869, 2975, 3731, 5481, 6613
Hin1I	GRCGYC	4 cut(s)	222, 2943, 2973, 3111
Hin6I	GCGC	6 cut(s)	2013, 2867, 2973, 3729, 5479, 6611
HinP1I	GCGC	6 cut(s)	2013, 2867, 2973, 3729, 5479, 6611
HincII	GTYRAC	2 cut(s)	675, 7075
HindII	GTYRAC	2 cut(s)	675, 7075
HindIII	AAGCTT	9 cut(s)	995, 1100, 2267, 3266, 4470, 5063, 5244, 5511, 5573
HpaI	GTTAAC	1 cut(s)	675
HpaII	CCGG	8 cut(s)	717, 2755, 3014, 3066, 3089, 3173, 4531, 7202
Hpy99I	CGWCG	4 cut(s)	3059, 3119, 6132, 7005
Hsp92I	GRCGYC	4 cut(s)	222, 2943, 2973, 3111
HspAI	GCGC	6 cut(s)	2013, 2867, 2973, 3729, 5479, 6611
KasI	GGCGCC	1 cut(s)	2972
KroI	GCCGGC	1 cut(s)	3013
KroNI	GCCGGC	1 cut(s)	3015
Ksp22I	TGATCA	2 cut(s)	1596, 6433
KspAI	GTTAAC	1 cut(s)	675
MabI	ACCWGGT	2 cut(s)	4511, 6826
MbiI	CCGCTC	1 cut(s)	6418
MfeI	CAATTG	8 cut(s)	1302, 1600, 2615, 2917, 3722, 5636, 5816, 6845
MflI	RGATCY	7 cut(s)	363, 1339, 1364, 1483, 2233, 3668, 5644
MlsI	TGGCCA	1 cut(s)	2678
MluNI	TGGCCA	1 cut(s)	2678
Mly113I	GGCGCC	1 cut(s)	2973
MlyI	GAGTC	8 cut(s)	182, 1757, 2067, 3959, 5123, 6218, 6419, 6865
Mox20I	TGGCCA	1 cut(s)	2678
Mph1103I	ATGCAT	4 cut(s)	2687, 2769, 4141, 6779
MroNI	GCCGGC	1 cut(s)	3013
MroXI	GAANNNNTTC	2 cut(s)	1398, 1544
MscI	TGGCCA	1 cut(s)	2678
Msp20I	TGGCCA	1 cut(s)	2678
MspA1I	CMGCKG	4 cut(s)	1534, 5300, 5372, 6581
MspCI	CTTAAG	3 cut(s)	1403, 2042, 6047
MspI	CCGG	8 cut(s)	717, 2755, 3014, 3066, 3089, 3173, 4531, 7202
MunI	CAATTG	8 cut(s)	1302, 1600, 2615, 2917, 3722, 5636, 5816, 6845
Mva1269I	GAATGC	6 cut(s)	2606, 4265, 5682, 5803, 6777, 7368
MvnI	CGCG	1 cut(s)	2997
NaeI	GCCGGC	1 cut(s)	3015
NarI	GGCGCC	1 cut(s)	2973
NciI	CCSGG	3 cut(s)	3067, 3174, 4532
NdeI	CATATG	5 cut(s)	1428, 3291, 3805, 4002, 5940
NgoMIV	GCCGGC	1 cut(s)	3013
NmeAIII	GCCGAG	2 cut(s)	3043, 3506
NmuCI	GTSAC	9 cut(s)	223, 230, 238, 380, 4603, 6210, 6651, 6734, 6975
NsbI	TGCGCA	3 cut(s)	3730, 5480, 6612
NsiI	ATGCAT	4 cut(s)	2687, 2769, 4141, 6779
NspV	TTCGAA	2 cut(s)	5569, 7022
PaeI	GCATGC	3 cut(s)	989, 5351, 6404
PaeR7I	CTCGAG	2 cut(s)	2987, 5220
PagI	TCATGA	4 cut(s)	1744, 1827, 1965, 2332
PaqCI	CACCTGC	1 cut(s)	307
PciI	ACATGT	2 cut(s)	227, 5323
PcsI	WCGNNNNNNNCGW	1 cut(s)	2994
PctI	GAATGC	6 cut(s)	2606, 4265, 5682, 5803, 6777, 7368
PdiI	GCCGGC	1 cut(s)	3015
PdmI	GAANNNNTTC	2 cut(s)	1398, 1544
PflFI	GACNNNGTC	1 cut(s)	236
PflMI	CCANNNNNTGG	4 cut(s)	763, 1246, 2982, 7245
PfoI	TCCNGGA	3 cut(s)	3065, 3949, 4530
PinAI	ACCGGT	1 cut(s)	716
PleI	GAGTC	8 cut(s)	182, 1756, 2067, 3959, 5123, 6217, 6418, 6864
PluTI	GGCGCC	1 cut(s)	2976
PpsI	GAGTC	8 cut(s)	182, 1756, 2067, 3959, 5123, 6217, 6418, 6864
Ppu21I	YACGTR	4 cut(s)	2348, 2878, 4955, 6908
PpuMI	RGGWCCY	1 cut(s)	7192
PscI	ACATGT	2 cut(s)	227, 5323
PshAI	GACNNNNGTC	1 cut(s)	7197
PshBI	ATTAAT	4 cut(s)	4191, 4296, 5006, 5781
PsiI	TTATAA	2 cut(s)	1635, 6233
Psp124BI	GAGCTC	3 cut(s)	1023, 1527, 3316
Psp5II	RGGWCCY	1 cut(s)	7192
PspFI	CCCAGC	5 cut(s)	2946, 3425, 6562, 6581, 6809
PspOMI	GGGCCC	1 cut(s)	1148
PspPPI	RGGWCCY	1 cut(s)	7192
PspXI	VCTCGAGB	2 cut(s)	2987, 5220
PstI	CTGCAG	4 cut(s)	1539, 4320, 6000, 6537
PstNI	CAGNNNCTG	5 cut(s)	1246, 2229, 3695, 5303, 5375
PsuI	RGATCY	7 cut(s)	363, 1339, 1364, 1483, 2233, 3668, 5644
PsyI	GACNNNGTC	1 cut(s)	236
PvuII	CAGCTG	4 cut(s)	1534, 5300, 5372, 6581
SacI	GAGCTC	3 cut(s)	1023, 1527, 3316
SchI	GAGTC	8 cut(s)	182, 1757, 2067, 3959, 5123, 6218, 6419, 6865
SexAI	ACCWGGT	2 cut(s)	4511, 6826
SfcI	CTRYAG	7 cut(s)	1535, 2589, 4316, 4758, 5807, 5996, 6533
SfoI	GGCGCC	1 cut(s)	2974
Sfr274I	CTCGAG	2 cut(s)	2987, 5220
SfuI	TTCGAA	2 cut(s)	5569, 7022
SinI	GGWCC	9 cut(s)	406, 503, 766, 932, 2689, 2992, 4534, 5088, 7192
SlaI	CTCGAG	2 cut(s)	2987, 5220
SphI	GCATGC	3 cut(s)	989, 5351, 6404
SspDI	GGCGCC	1 cut(s)	2972
SspI	AATATT	4 cut(s)	1165, 3900, 5395, 6720
SstI	GAGCTC	3 cut(s)	1023, 1527, 3316
StyI	CCWWGG	7 cut(s)	584, 2164, 2311, 2692, 2976, 3909, 4541
TaqII	GACCGA	1 cut(s)	949
TatI	WGTACW	5 cut(s)	978, 1175, 3286, 3753, 7242
TauI	GCSGC	4 cut(s)	1787, 1851, 3062, 6368
TseFI	GTSAC	9 cut(s)	223, 230, 238, 380, 4603, 6210, 6651, 6734, 6975
Tsp45I	GTSAC	9 cut(s)	223, 230, 238, 380, 4603, 6210, 6651, 6734, 6975
TspGWI	ACGGA	5 cut(s)	862, 1728, 4586, 7397, 7487
Tth111I	GACNNNGTC	1 cut(s)	236
Van91I	CCANNNNNTGG	4 cut(s)	763, 1246, 2982, 7245
Vha464I	CTTAAG	3 cut(s)	1403, 2042, 6047
VneI	GTGCAC	1 cut(s)	6171
VpaK11BI	GGWCC	9 cut(s)	406, 503, 766, 932, 2689, 2992, 4534, 5088, 7192
VspI	ATTAAT	4 cut(s)	4191, 4296, 5006, 5781
XagI	CCTNNNNNAGG	3 cut(s)	303, 887, 3539
XbaI	TCTAGA	2 cut(s)	4420, 6818
XhoI	CTCGAG	2 cut(s)	2987, 5220
XmiI	GTMKAC	3 cut(s)	2028, 2592, 6529
XmnI	GAANNNNTTC	2 cut(s)	1398, 1544
Zsp2I	ATGCAT	4 cut(s)	2687, 2769, 4141, 6779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.