protein desumoylation
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0005394.1_g000007 |
| rosa_samantha | Rh2AG647100 Rh2BG657800 Rh5AG375300 Rh5CG367100 |
| rosa_wichuraiana | Rw1G008960 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 258 |
| AcuI | CTGAAG | 1 cut(s) | 381 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 258, 530 |
| AgsI | TTSAA | 3 cut(s) | 62, 392, 450 |
| AleI | CACNNNNGTG | 1 cut(s) | 126 |
| AluBI | AGCT | 1 cut(s) | 228 |
| AluI | AGCT | 1 cut(s) | 228 |
| Alw26I | GTCTC | 1 cut(s) | 47 |
| AspS9I | GGNCC | 1 cut(s) | 521 |
| AsuHPI | GGTGA | 3 cut(s) | 16, 524, 581 |
| AvaII | GGWCC | 1 cut(s) | 521 |
| BccI | CCATC | 4 cut(s) | 158, 252, 509, 535 |
| BcoDI | GTCTC | 1 cut(s) | 47 |
| BfaI | CTAG | 1 cut(s) | 525 |
| BfmI | CTRYAG | 1 cut(s) | 48 |
| Bme18I | GGWCC | 1 cut(s) | 521 |
| BmgT120I | GGNCC | 1 cut(s) | 521 |
| BmiI | GGNNCC | 1 cut(s) | 522 |
| BmrI | ACTGGG | 1 cut(s) | 76 |
| BmsI | GCATC | 1 cut(s) | 448 |
| BmuI | ACTGGG | 1 cut(s) | 76 |
| BoxI | GACNNNNGTC | 1 cut(s) | 11 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 316, 348 |
| BsaBI | GATNNNNATC | 1 cut(s) | 228 |
| BsaJI | CCNNGG | 1 cut(s) | 486 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 258, 530 |
| Bse1I | ACTGG | 1 cut(s) | 71 |
| Bse3DI | GCAATG | 1 cut(s) | 309 |
| Bse8I | GATNNNNATC | 1 cut(s) | 228 |
| BseDI | CCNNGG | 1 cut(s) | 486 |
| BseGI | GGATG | 1 cut(s) | 463 |
| BseJI | GATNNNNATC | 1 cut(s) | 228 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 258, 530 |
| BseMI | GCAATG | 1 cut(s) | 309 |
| BseMII | CTCAG | 3 cut(s) | 204, 594, 600 |
| BseNI | ACTGG | 1 cut(s) | 71 |
| BseRI | GAGGAG | 2 cut(s) | 308, 419 |
| BslFI | GGGAC | 2 cut(s) | 276, 534 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 258, 530 |
| BsmAI | GTCTC | 1 cut(s) | 47 |
| BsmFI | GGGAC | 2 cut(s) | 276, 534 |
| BspCNI | CTCAG | 3 cut(s) | 205, 595, 599 |
| BspLI | GGNNCC | 1 cut(s) | 522 |
| BsrDI | GCAATG | 1 cut(s) | 309 |
| BsrI | ACTGG | 1 cut(s) | 71 |
| BssECI | CCNNGG | 1 cut(s) | 486 |
| BssT1I | CCWWGG | 1 cut(s) | 486 |
| BstC8I | GCNNGC | 1 cut(s) | 253 |
| BstDEI | CTNAG | 3 cut(s) | 213, 586, 603 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 528 |
| BstF5I | GGATG | 1 cut(s) | 463 |
| BstMAI | GTCTC | 1 cut(s) | 47 |
| BstNSI | RCATGY | 2 cut(s) | 269, 346 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 11 |
| BstSFI | CTRYAG | 1 cut(s) | 48 |
| BtsCI | GGATG | 1 cut(s) | 463 |
| Cac8I | GCNNGC | 1 cut(s) | 253 |
| Cfr13I | GGNCC | 1 cut(s) | 521 |
| CviAII | CATG | 8 cut(s) | 152, 266, 290, 322, 343, 370, 395, 453 |
| CviJI | RGCY | 4 cut(s) | 228, 251, 351, 442 |
| CviKI_1 | RGCY | 4 cut(s) | 228, 251, 351, 442 |
| DdeI | CTNAG | 3 cut(s) | 213, 586, 603 |
| DraI | TTTAAA | 1 cut(s) | 594 |
| Eco130I | CCWWGG | 1 cut(s) | 486 |
| Eco47I | GGWCC | 1 cut(s) | 521 |
| Eco57I | CTGAAG | 1 cut(s) | 381 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 528 |
| EcoO109I | RGGNCCY | 1 cut(s) | 521 |
| EcoT14I | CCWWGG | 1 cut(s) | 486 |
| EcoT22I | ATGCAT | 1 cut(s) | 463 |
| ErhI | CCWWGG | 1 cut(s) | 486 |
| FaeI | CATG | 8 cut(s) | 155, 269, 293, 325, 346, 373, 398, 456 |
| FaqI | GGGAC | 2 cut(s) | 276, 534 |
| FatI | CATG | 8 cut(s) | 151, 265, 289, 321, 342, 369, 394, 452 |
| FokI | GGATG | 1 cut(s) | 470 |
| FspBI | CTAG | 1 cut(s) | 525 |
| Hin1II | CATG | 8 cut(s) | 155, 269, 293, 325, 346, 373, 398, 456 |
| HinfI | GANTC | 4 cut(s) | 284, 307, 327, 605 |
| HphI | GGTGA | 3 cut(s) | 16, 524, 581 |
| Hpy188I | TCNGA | 1 cut(s) | 24 |
| Hpy188III | TCNNGA | 3 cut(s) | 62, 98, 602 |
| HpyAV | CCTTC | 2 cut(s) | 152, 356 |
| HpyCH4V | TGCA | 6 cut(s) | 93, 151, 269, 321, 346, 461 |
| HpyF3I | CTNAG | 3 cut(s) | 213, 586, 603 |
| Hsp92II | CATG | 8 cut(s) | 155, 269, 293, 325, 346, 373, 398, 456 |
| LpnPI | CCDG | 3 cut(s) | 52, 265, 372 |
| LweI | GCATC | 1 cut(s) | 448 |
| MaeI | CTAG | 1 cut(s) | 525 |
| MaeIII | GTNAC | 1 cut(s) | 4 |
| MboII | GAAGA | 1 cut(s) | 145 |
| MfeI | CAATTG | 1 cut(s) | 124 |
| MluCI | AATT | 2 cut(s) | 124, 610 |
| MlyI | GAGTC | 1 cut(s) | 614 |
| MnlI | CCTC | 9 cut(s) | 148, 161, 244, 286, 291, 397, 400, 524, 560 |
| Mph1103I | ATGCAT | 1 cut(s) | 463 |
| MseI | TTAA | 2 cut(s) | 108, 593 |
| MslI | CAYNNNNRTG | 1 cut(s) | 126 |
| MunI | CAATTG | 1 cut(s) | 124 |
| NlaIII | CATG | 8 cut(s) | 155, 269, 293, 325, 346, 373, 398, 456 |
| NlaIV | GGNNCC | 1 cut(s) | 522 |
| NmuCI | GTSAC | 1 cut(s) | 4 |
| NsiI | ATGCAT | 1 cut(s) | 463 |
| NspI | RCATGY | 2 cut(s) | 269, 346 |
| OliI | CACNNNNGTG | 1 cut(s) | 126 |
| PfeI | GAWTC | 3 cut(s) | 284, 307, 327 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 258 |
| PleI | GAGTC | 1 cut(s) | 613 |
| PpsI | GAGTC | 1 cut(s) | 613 |
| PpuMI | RGGWCCY | 1 cut(s) | 521 |
| PshAI | GACNNNNGTC | 1 cut(s) | 11 |
| Psp5II | RGGWCCY | 1 cut(s) | 521 |
| PspN4I | GGNNCC | 1 cut(s) | 522 |
| PspPI | GGNCC | 1 cut(s) | 521 |
| PspPPI | RGGWCCY | 1 cut(s) | 521 |
| RseI | CAYNNNNRTG | 1 cut(s) | 126 |
| SaqAI | TTAA | 2 cut(s) | 108, 593 |
| Sau96I | GGNCC | 1 cut(s) | 521 |
| SchI | GAGTC | 1 cut(s) | 614 |
| SetI | ASST | 6 cut(s) | 230, 361, 411, 488, 526, 571 |
| SfaNI | GCATC | 1 cut(s) | 448 |
| SfcI | CTRYAG | 1 cut(s) | 48 |
| SinI | GGWCC | 1 cut(s) | 521 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 126 |
| Sse9I | AATT | 2 cut(s) | 124, 610 |
| SspMI | CTAG | 1 cut(s) | 525 |
| StyI | CCWWGG | 1 cut(s) | 486 |
| TasI | AATT | 2 cut(s) | 124, 610 |
| TfiI | GAWTC | 3 cut(s) | 284, 307, 327 |
| Tru1I | TTAA | 2 cut(s) | 108, 593 |
| Tru9I | TTAA | 2 cut(s) | 108, 593 |
| TseFI | GTSAC | 1 cut(s) | 4 |
| Tsp45I | GTSAC | 1 cut(s) | 4 |
| TspDTI | ATGAA | 1 cut(s) | 297 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 258 |
| VpaK11BI | GGWCC | 1 cut(s) | 521 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 528 |
| XceI | RCATGY | 2 cut(s) | 269, 346 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 450 |
| XspI | CTAG | 1 cut(s) | 525 |
| Zsp2I | ATGCAT | 1 cut(s) | 463 |