Rh5CG367100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
44800077 .. 44800346
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG367100.1

Sequence Viewer

Length: 270 bp
ATGATATGCACAGCCTTGTACCTGAAGGCAACAAGGTATAATGATGAATATGACAAAGGGGAGGTTGGTCAAAAGGGAAAACTCAATATAACCAAACCATTTTCAGAATGGAATGCACCAGATTTTTGCGACTTGCCAACCTTGATTAATATATTTGAAATGTATGATGTTGGGGGACCTAGTGGAGAAAGCAAGATGGGCTCAGTTGCTGATGATATGGGAGGTGAGTTAGGGGAAATCTCGGCTTTAAAATCTCCTAAATTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.76

Weight (kDa)

4.49

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020748)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005394.1_g000007
rosa_samantha Rh2AG647100 Rh2BG657800 Rh5AG375300 Rh5CG367100
rosa_wichuraiana Rw1G008960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 260
AcuI CTGAAG 1 cut(s) 44
AfaI GTAC 1 cut(s) 20
AgsI TTSAA 1 cut(s) 158
AlwNI CAGNNNCTG 1 cut(s) 209
ApoI RAATTY 1 cut(s) 260
AseI ATTAAT 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 236
AvaII GGWCC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 203
BccI CCATC 1 cut(s) 190
BfaI CTAG 1 cut(s) 180
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 177
BseMII CTCAG 1 cut(s) 216
BslFI GGGAC 1 cut(s) 189
BsmFI GGGAC 1 cut(s) 189
BsmI GAATGC 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 203
BspCNI CTCAG 1 cut(s) 215
BspLI GGNNCC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 198
CaiI CAGNNNCTG 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 19
CviJI RGCY 3 cut(s) 14, 201, 245
CviKI_1 RGCY 3 cut(s) 14, 201, 245
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 1 cut(s) 202
DraI TTTAAA 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 176
Eco57I CTGAAG 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 203
FaiI YATR 7 cut(s) 7, 39, 51, 89, 152, 165, 218
FaqI GGGAC 1 cut(s) 189
FriOI GRGCYC 1 cut(s) 203
FspBI CTAG 1 cut(s) 180
HphI GGTGA 1 cut(s) 236
Hpy188I TCNGA 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 19
HpyCH4V TGCA 2 cut(s) 9, 116
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpyF3I CTNAG 1 cut(s) 202
LpnPI CCDG 2 cut(s) 35, 132
MaeI CTAG 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 1 cut(s) 260
MnlI CCTC 2 cut(s) 55, 215
MseI TTAA 2 cut(s) 147, 248
Mva1269I GAATGC 1 cut(s) 118
MwoI GCNNNNNNNGC 1 cut(s) 198
NlaIV GGNNCC 1 cut(s) 177
NmeAIII GCCGAG 1 cut(s) 221
PctI GAATGC 1 cut(s) 118
PpuMI RGGWCCY 1 cut(s) 176
PshBI ATTAAT 1 cut(s) 147
Psp5II RGGWCCY 1 cut(s) 176
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 176
PspPPI RGGWCCY 1 cut(s) 176
PstNI CAGNNNCTG 1 cut(s) 209
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SaqAI TTAA 2 cut(s) 147, 248
Sau96I GGNCC 1 cut(s) 176
SduI GDGCHC 1 cut(s) 203
SetI ASST 6 cut(s) 24, 38, 66, 143, 181, 226
SgeI CNNG 9 cut(s) 28, 34, 45, 131, 145, 154, 192, 205, 253
SinI GGWCC 1 cut(s) 176
Sse9I AATT 1 cut(s) 260
SspMI CTAG 1 cut(s) 180
TasI AATT 1 cut(s) 260
Tru1I TTAA 2 cut(s) 147, 248
Tru9I TTAA 2 cut(s) 147, 248
TspDTI ATGAA 1 cut(s) 60
VpaK11BI GGWCC 1 cut(s) 176
VspI ATTAAT 1 cut(s) 147
XapI RAATTY 1 cut(s) 260
XcmI CCANNNNNNNNNTGG 1 cut(s) 105
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.