Rh2AG647100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
86736913 .. 86737323
411 bp
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UTR
Exon/CDS
Intron
Rh2AG647100.1

Sequence Viewer

Length: 411 bp
ATGAAGCTAGTTGAAGGGGTGTCATCCTATCAGAGTAGGAGGTGTGGGCTGGTATCAGGTTGTATTGTATTTCTCCAGCTATTCTACCTGGACGTAGTTGCATACAGCCAGCTTTCTAGGATGGTTATGGTGTTGAACATGACAACATGGGAACATGGGAAAGCAACATGGGAAGTTATGGTGTTGAACATGACAAAGAGGAGGTTTGTGAAAAGGGAAAACTCCAATATAACCAAGCCATTTTCAAAATGGGATGCATCTGATTTGTGCGACTCACCAACCTTGGTTGATATATTTGGAATGTATGGTGATGGGGGACCTAGTGGAGGAAGCAAGATGGGCTTAGTTGCTGATGATGTGGGAGGTGAGTTGGGGGAAATCTCAGTTTTAAAATCTCCTGCGTCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.94

Weight (kDa)

5.8

Isoelectric Point (pI)

50.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020748)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005394.1_g000007
rosa_samantha Rh2AG647100 Rh2BG657800 Rh5AG375300 Rh5CG367100
rosa_wichuraiana Rw1G008960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 326
AgsI TTSAA 4 cut(s) 14, 136, 187, 246
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 3 cut(s) 7, 79, 112
AluI AGCT 3 cut(s) 7, 79, 112
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 3 cut(s) 267, 320, 377
AvaII GGWCC 1 cut(s) 317
BccI CCATC 3 cut(s) 115, 305, 331
BciT130I CCWGG 1 cut(s) 89
BfaI CTAG 3 cut(s) 8, 117, 321
Bme1390I CCNGG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 318
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 2 cut(s) 244, 266
BpmI CTGGAG 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 282
Bsc4I CCNNNNNNNGG 1 cut(s) 326
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 3 cut(s) 23, 126, 259
BseLI CCNNNNNNNGG 1 cut(s) 326
BseMII CTCAG 1 cut(s) 396
BseRI GAGGAG 1 cut(s) 214
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 330
BspCNI CTCAG 1 cut(s) 395
BspLI GGNNCC 1 cut(s) 318
BssECI CCNNGG 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 110
BstDEI CTNAG 2 cut(s) 343, 382
BstENI CCTNNNNNAGG 1 cut(s) 324
BstF5I GGATG 3 cut(s) 23, 126, 259
BstMWI GCNNNNNNNGC 1 cut(s) 339
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BtsCI GGATG 3 cut(s) 23, 126, 259
Cac8I GCNNGC 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 317
CseI GACGC 1 cut(s) 390
CviAII CATG 5 cut(s) 139, 147, 155, 168, 190
CviJI RGCY 7 cut(s) 7, 49, 79, 108, 112, 238, 342
CviKI_1 RGCY 7 cut(s) 7, 49, 79, 108, 112, 238, 342
DdeI CTNAG 2 cut(s) 343, 382
DraI TTTAAA 1 cut(s) 390
Eco130I CCWWGG 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 317
EcoNI CCTNNNNNAGG 1 cut(s) 324
EcoO109I RGGNCCY 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 282
EcoT22I ATGCAT 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 5 cut(s) 142, 150, 158, 171, 193
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FaqI GGGAC 1 cut(s) 330
FatI CATG 5 cut(s) 138, 146, 154, 167, 189
FokI GGATG 3 cut(s) 10, 133, 266
FspBI CTAG 3 cut(s) 8, 117, 321
GsuI CTGGAG 1 cut(s) 59
HgaI GACGC 1 cut(s) 390
Hin1II CATG 5 cut(s) 142, 150, 158, 171, 193
HinfI GANTC 1 cut(s) 272
HphI GGTGA 3 cut(s) 267, 320, 377
Hpy188I TCNGA 3 cut(s) 33, 262, 406
HpyAV CCTTC 1 cut(s) 8
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 101, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 339
HpyF3I CTNAG 2 cut(s) 343, 382
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 5 cut(s) 142, 150, 158, 171, 193
LpnPI CCDG 6 cut(s) 35, 42, 74, 89, 101, 122
LweI GCATC 2 cut(s) 244, 266
MaeI CTAG 3 cut(s) 8, 117, 321
MaeII ACGT 1 cut(s) 93
MlyI GAGTC 1 cut(s) 266
MnlI CCTC 5 cut(s) 33, 192, 195, 320, 356
Mph1103I ATGCAT 1 cut(s) 259
MseI TTAA 1 cut(s) 389
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 339
NlaIII CATG 5 cut(s) 142, 150, 158, 171, 193
NlaIV GGNNCC 1 cut(s) 318
NsiI ATGCAT 1 cut(s) 259
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
PpuMI RGGWCCY 1 cut(s) 317
Psp5II RGGWCCY 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 318
PspPI GGNCC 1 cut(s) 317
PspPPI RGGWCCY 1 cut(s) 317
SaqAI TTAA 1 cut(s) 389
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 1 cut(s) 89
SfaNI GCATC 2 cut(s) 244, 266
SinI GGWCC 1 cut(s) 317
SspMI CTAG 3 cut(s) 8, 117, 321
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 282
TaiI ACGT 1 cut(s) 96
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 317
XagI CCTNNNNNAGG 1 cut(s) 324
XcmI CCANNNNNNNNNTGG 1 cut(s) 246
XspI CTAG 3 cut(s) 8, 117, 321
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.