Rw1G008960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0020748
Physical Location & Seq
Reverse (-)
19708804 .. 19711659
2856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G008960.1

Sequence Viewer

Length: 1458 bp
ATGATGTCAACCAATAATAGGGACGGCACCGTGGGGCTGGGATTAGATAGATCAGTTCATGAAGACATCTACGAGGTCAAGGTGGACCTTAGTCATGTGGTTTCTGACTTGGGGTGGCTTAGGGACATTGTTGGCAGGCTTCACCCTGAGTTCAACGAACTCATTAACAAGGTTGAGAGATTAATACAGTCCGTGACCAACATTAAGGAGGAGTGTGTGAGAGAGGTCATAGAGGAAATGGGGAAAATGGGGGAGTACATGGGGGATCAAGTGCCAAAGGGAAGTCCAGAGAAGTGCAATGAGGGAAATTGTTCCCCGGTCGTCTCTGCAAGTTCTAGCGGCCCGACATGGCCTCCTATAAGAGTAAGTAGAACAGCGAACATACATGTGGACTGTGGAGTAAAAGGTGTAACCAAAGGTCTTGCTAGAGCTCTATTCCCACCTGCAGTAAAAGAAGATGAAGCCATGCACTACTTAACGGGATTGGTCGATTGTGACCCACAATCACCTTGGGAGGTAGAGAGGTATCATGTTGGTCCTTACCACCTGAAGAAGCCGTTGGAGGGAGTTGAAATGAGGTTGATAAATTTCATTTTCATGGCCCGTAAGGATTTGTCAAGAGAGGAAGAAAGGACCCTGGTGGCTGCGTTTGGGAATGACAGAGCTCTCTTGTATCGGGATGAAATTATTTGTTTTCAGCCACGAACATATGTTAATACACCGAAAAAGGCAAGTGCATATGACCCTACAGAGACATTTCAAGACTGGGTTGAGAATACAAGAAGTGTATGCAATCTTGATAGATTTAACGGACAACTCCACAATTGTGAGAAGATATTTGTGCCGTTGCATGAGGAAGGAGATGGAGGGCATTGGTATCTTATGGTGGTTCTTGTTAGGGAAAAAGTTGCTGAGATATGGGATAGCTATCCCTCTGTGGATAAAGAAGCCAGCAGATGGGGACATGCAATAACAATGTCAAATACAAAGGTGCTGCAACTTCATTTGGTACATTCGATATCATCGTTCCTGAAGGGGTTCCTCTCCAAAAGAATGGATATGATTGCGGAATATATGTCATTCAAAATATGCTCCAATATGGGAAAAAAATGGGCCGAAGAGTATGAATCACATGAGGAGAGGGCAATGATTCTGTTAGATTGCATGAGATTCTCTCACAATGACATGCACAGCCTTATACCTGAAGGCAACATGGGAAGTGGTTATGGTGTTGAACATGACAAAGAGGAGGTTTGTGAAAAGGAAAAACTCAATATAACCAAGCCATTTTCAACATGGGATACATCTGATTTCTGCGACTTACCAACCTTGGTTGATATATTTGGAATGTATGGTGATGGGGGACCTAGTGGAGGAAGCAAGATGGGTTTAGTTGTTGATGATGTGGGAGGTGAGTTGGGAGAAATCTCAGTTTTAAAATCTCCTGAGTCTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

485

Amino Acids

54.74

Weight (kDa)

5.18

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020748)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005394.1_g000007
rosa_samantha Rh2AG647100 Rh2BG657800 Rh5AG375300 Rh5CG367100
rosa_wichuraiana Rw1G008960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 451
Acc36I ACCTGC 1 cut(s) 451
AccB1I GGYRCC 1 cut(s) 26
AccB7I CCANNNNNTGG 1 cut(s) 957
AciI CCGC 2 cut(s) 339, 1067
AclWI GGATC 1 cut(s) 273
AcsI RAATTY 1 cut(s) 586
AcuI CTGAAG 3 cut(s) 569, 1052, 1224
AfaI GTAC 2 cut(s) 257, 1011
AfiI CCNNNNNNNGG 4 cut(s) 18, 563, 957, 1373
AflIII ACRYGT 1 cut(s) 385
AgsI TTSAA 6 cut(s) 154, 572, 761, 1084, 1235, 1293
AjnI CCWGG 1 cut(s) 636
AjuI GAANNNNNNNTTGG 2 cut(s) 542, 574
AleI CACNNNNGTG 1 cut(s) 825
AluBI AGCT 3 cut(s) 431, 665, 927
AluI AGCT 3 cut(s) 431, 665, 927
Alw21I GWGCWC 2 cut(s) 433, 667
Alw26I GTCTC 2 cut(s) 328, 746
AlwI GGATC 1 cut(s) 273
AoxI GGCC 4 cut(s) 340, 350, 600, 1113
ApeKI GCWGC 2 cut(s) 644, 994
ApoI RAATTY 1 cut(s) 586
AseI ATTAAT 1 cut(s) 182
Asp700I GAANNNNTTC 2 cut(s) 310, 1037
AspS9I GGNCC 7 cut(s) 85, 341, 536, 601, 633, 1113, 1364
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 4 cut(s) 134, 498, 1367, 1424
AvaII GGWCC 4 cut(s) 85, 536, 633, 1364
BanI GGYRCC 1 cut(s) 26
BanII GRGCYC 2 cut(s) 433, 667
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 2 cut(s) 433, 667
BbvI GCAGC 2 cut(s) 631, 981
BccI CCATC 4 cut(s) 857, 951, 1352, 1378
BceAI ACGGC 3 cut(s) 40, 541, 829
BciT130I CCWGG 1 cut(s) 638
BciVI GTATCC 1 cut(s) 1294
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 2 cut(s) 328, 746
BfaI CTAG 3 cut(s) 336, 426, 1368
BfmI CTRYAG 2 cut(s) 444, 747
BfuAI ACCTGC 1 cut(s) 451
BfuI GTATCC 1 cut(s) 1294
BisI GCNGC 3 cut(s) 340, 645, 995
BlsI GCNGC 3 cut(s) 341, 646, 996
Bme1390I CCNGG 2 cut(s) 317, 638
Bme18I GGWCC 4 cut(s) 85, 536, 633, 1364
BmgT120I GGNCC 7 cut(s) 85, 341, 536, 601, 633, 1113, 1364
BmiI GGNNCC 4 cut(s) 28, 635, 1040, 1365
BmrFI CCNGG 2 cut(s) 317, 638
BmrI ACTGGG 1 cut(s) 775
BmuI ACTGGG 1 cut(s) 775
BoxI GACNNNNGTC 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 69
BplI GAGNNNNNCTC 2 cut(s) 1159, 1191
Bpu10I CCTNAGC 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 927
BsaJI CCNNGG 5 cut(s) 30, 315, 509, 636, 1329
BsaXI ACNNNNNCTCC 2 cut(s) 337, 367
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 563, 957, 1373
Bse1I ACTGG 1 cut(s) 770
Bse3DI GCAATG 2 cut(s) 304, 1152
Bse8I GATNNNNATC 1 cut(s) 927
BseBI CCWGG 1 cut(s) 638
BseDI CCNNGG 5 cut(s) 30, 315, 509, 636, 1329
BseGI GGATG 1 cut(s) 685
BseJI GATNNNNATC 1 cut(s) 927
BseLI CCNNNNNNNGG 4 cut(s) 18, 563, 957, 1373
BseMI GCAATG 2 cut(s) 304, 1152
BseMII CTCAG 4 cut(s) 138, 903, 1437, 1443
BseNI ACTGG 1 cut(s) 770
BseRI GAGGAG 3 cut(s) 224, 1151, 1262
BseXI GCAGC 2 cut(s) 631, 981
BseYI CCCAGC 1 cut(s) 37
Bsh1285I CGRYCG 1 cut(s) 321
BshFI GGCC 4 cut(s) 342, 352, 602, 1115
BshNI GGYRCC 1 cut(s) 26
BsiEI CGRYCG 1 cut(s) 321
BsiHKAI GWGCWC 2 cut(s) 433, 667
BsiSI CCGG 1 cut(s) 317
BslFI GGGAC 4 cut(s) 35, 137, 975, 1377
BslI CCNNNNNNNGG 4 cut(s) 18, 563, 957, 1373
BsmAI GTCTC 2 cut(s) 328, 746
BsmBI CGTCTC 1 cut(s) 328
BsmFI GGGAC 4 cut(s) 35, 137, 975, 1377
BsnI GGCC 4 cut(s) 342, 352, 602, 1115
Bsp1286I GDGCHC 2 cut(s) 433, 667
Bsp143I GATC 2 cut(s) 50, 265
BspACI CCGC 2 cut(s) 339, 1067
BspANI GGCC 4 cut(s) 342, 352, 602, 1115
BspCNI CTCAG 4 cut(s) 139, 904, 1438, 1442
BspHI TCATGA 1 cut(s) 58
BspLI GGNNCC 4 cut(s) 28, 635, 1040, 1365
BspMAI CTGCAG 1 cut(s) 448
BspMI ACCTGC 1 cut(s) 451
BspPI GGATC 1 cut(s) 273
BspT107I GGYRCC 1 cut(s) 26
BsrDI GCAATG 2 cut(s) 304, 1152
BsrI ACTGG 1 cut(s) 770
BssECI CCNNGG 5 cut(s) 30, 315, 509, 636, 1329
BssMI GATC 2 cut(s) 50, 265
BssT1I CCWWGG 2 cut(s) 509, 1329
Bst2UI CCWGG 1 cut(s) 638
Bst4CI ACNGT 3 cut(s) 31, 189, 395
Bst6I CTCTTC 1 cut(s) 1113
BstC8I GCNNGC 2 cut(s) 137, 952
BstDEI CTNAG 6 cut(s) 89, 119, 147, 912, 1429, 1446
BstDSI CCRYGG 1 cut(s) 30
BstENI CCTNNNNNAGG 1 cut(s) 1371
BstF5I GGATG 1 cut(s) 685
BstKTI GATC 2 cut(s) 53, 268
BstMAI GTCTC 2 cut(s) 328, 746
BstMBI GATC 2 cut(s) 50, 265
BstMCI CGRYCG 1 cut(s) 321
BstNI CCWGG 1 cut(s) 638
BstNSI RCATGY 3 cut(s) 389, 968, 1189
BstPAI GACNNNNGTC 1 cut(s) 90
BstSCI CCNGG 2 cut(s) 315, 636
BstSFI CTRYAG 2 cut(s) 444, 747
BstV1I GCAGC 2 cut(s) 631, 981
BstV2I GAAGAC 1 cut(s) 69
BstXI CCANNNNNNTGG 1 cut(s) 1054
BsuI GTATCC 1 cut(s) 1294
BsuRI GGCC 4 cut(s) 342, 352, 602, 1115
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 1 cut(s) 685
BveI ACCTGC 1 cut(s) 451
Cac8I GCNNGC 2 cut(s) 137, 952
CciI TCATGA 1 cut(s) 58
Cfr13I GGNCC 7 cut(s) 85, 341, 536, 601, 633, 1113, 1364
Csp6I GTAC 2 cut(s) 256, 1010
CviQI GTAC 2 cut(s) 256, 1010
DdeI CTNAG 6 cut(s) 89, 119, 147, 912, 1429, 1446
DpnI GATC 2 cut(s) 52, 267
DpnII GATC 2 cut(s) 50, 265
DraI TTTAAA 1 cut(s) 1437
Eam1104I CTCTTC 1 cut(s) 1113
EarI CTCTTC 1 cut(s) 1113
Ecl136II GAGCTC 2 cut(s) 431, 665
Eco130I CCWWGG 2 cut(s) 509, 1329
Eco24I GRGCYC 2 cut(s) 433, 667
Eco32I GATATC 1 cut(s) 1020
Eco47I GGWCC 4 cut(s) 85, 536, 633, 1364
Eco53kI GAGCTC 2 cut(s) 431, 665
Eco57I CTGAAG 3 cut(s) 569, 1052, 1224
EcoICRI GAGCTC 2 cut(s) 431, 665
EcoNI CCTNNNNNAGG 1 cut(s) 1371
EcoO109I RGGNCCY 2 cut(s) 633, 1364
EcoRII CCWGG 1 cut(s) 636
EcoRV GATATC 1 cut(s) 1020
EcoT14I CCWWGG 2 cut(s) 509, 1329
EcoT38I GRGCYC 2 cut(s) 433, 667
ErhI CCWWGG 2 cut(s) 509, 1329
Esp3I CGTCTC 1 cut(s) 328
FaqI GGGAC 4 cut(s) 35, 137, 975, 1377
FauNDI CATATG 2 cut(s) 709, 739
Fnu4HI GCNGC 3 cut(s) 340, 645, 995
FokI GGATG 1 cut(s) 692
FriOI GRGCYC 2 cut(s) 433, 667
Fsp4HI GCNGC 3 cut(s) 340, 645, 995
FspBI CTAG 3 cut(s) 336, 426, 1368
GluI GCNGC 3 cut(s) 340, 645, 995
GsaI CCCAGC 1 cut(s) 41
HaeIII GGCC 4 cut(s) 342, 352, 602, 1115
HapII CCGG 1 cut(s) 317
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 4 cut(s) 1127, 1150, 1170, 1448
HpaII CCGG 1 cut(s) 317
HphI GGTGA 4 cut(s) 134, 498, 1367, 1424
Hpy166II GTNNAC 3 cut(s) 9, 85, 391
Hpy188I TCNGA 2 cut(s) 106, 1309
Hpy188III TCNNGA 8 cut(s) 59, 287, 618, 677, 761, 797, 1030, 1445
Hpy8I GTNNAC 3 cut(s) 9, 85, 391
HpyAV CCTTC 3 cut(s) 851, 1027, 1199
HpyCH4III ACNGT 3 cut(s) 31, 189, 395
HpyF3I CTNAG 6 cut(s) 89, 119, 147, 912, 1429, 1446
Kzo9I GATC 2 cut(s) 50, 265
LmnI GCTCC 1 cut(s) 1097
Lsp1109I GCAGC 2 cut(s) 631, 981
MaeI CTAG 3 cut(s) 336, 426, 1368
MaeIII GTNAC 3 cut(s) 193, 409, 494
MalI GATC 2 cut(s) 52, 267
MboI GATC 2 cut(s) 50, 265
MboII GAAGA 6 cut(s) 74, 467, 562, 638, 844, 1130
MfeI CAATTG 1 cut(s) 823
MhlI GDGCHC 2 cut(s) 433, 667
MluCI AATT 5 cut(s) 307, 586, 684, 823, 1453
MlyI GAGTC 1 cut(s) 1457
MmeI TCCRAC 1 cut(s) 540
MroXI GAANNNNTTC 2 cut(s) 310, 1037
MseI TTAA 7 cut(s) 165, 182, 204, 476, 714, 807, 1436
MslI CAYNNNNRTG 3 cut(s) 386, 596, 825
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 2 cut(s) 317, 638
MunI CAATTG 1 cut(s) 823
MvaI CCWGG 1 cut(s) 638
NciI CCSGG 1 cut(s) 317
NdeI CATATG 2 cut(s) 709, 739
NdeII GATC 2 cut(s) 50, 265
NlaIV GGNNCC 4 cut(s) 28, 635, 1040, 1365
NmuCI GTSAC 2 cut(s) 193, 494
NspI RCATGY 3 cut(s) 389, 968, 1189
OliI CACNNNNGTG 1 cut(s) 825
PagI TCATGA 1 cut(s) 58
PaqCI CACCTGC 1 cut(s) 451
PciI ACATGT 1 cut(s) 385
PcsI WCGNNNNNNNCGW 1 cut(s) 1022
PdmI GAANNNNTTC 2 cut(s) 310, 1037
PfeI GAWTC 3 cut(s) 1127, 1150, 1170
PflMI CCANNNNNTGG 1 cut(s) 957
PkrI GCNGC 3 cut(s) 341, 646, 996
PleI GAGTC 1 cut(s) 1456
PpsI GAGTC 1 cut(s) 1456
PpuMI RGGWCCY 2 cut(s) 633, 1364
PscI ACATGT 1 cut(s) 385
PshAI GACNNNNGTC 1 cut(s) 90
PshBI ATTAAT 1 cut(s) 182
Psp124BI GAGCTC 2 cut(s) 433, 667
Psp5II RGGWCCY 2 cut(s) 633, 1364
Psp6I CCWGG 1 cut(s) 636
PspFI CCCAGC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 636
PspN4I GGNNCC 4 cut(s) 28, 635, 1040, 1365
PspPI GGNCC 7 cut(s) 85, 341, 536, 601, 633, 1113, 1364
PspPPI RGGWCCY 2 cut(s) 633, 1364
PstI CTGCAG 1 cut(s) 448
RsaI GTAC 2 cut(s) 257, 1011
RsaNI GTAC 2 cut(s) 256, 1010
RseI CAYNNNNRTG 3 cut(s) 386, 596, 825
SacI GAGCTC 2 cut(s) 433, 667
SaqAI TTAA 7 cut(s) 165, 182, 204, 476, 714, 807, 1436
SatI GCNGC 3 cut(s) 340, 645, 995
Sau3AI GATC 2 cut(s) 50, 265
Sau96I GGNCC 7 cut(s) 85, 341, 536, 601, 633, 1113, 1364
SchI GAGTC 1 cut(s) 1457
ScrFI CCNGG 2 cut(s) 317, 638
SduI GDGCHC 2 cut(s) 433, 667
SfcI CTRYAG 2 cut(s) 444, 747
SinI GGWCC 4 cut(s) 85, 536, 633, 1364
SmiMI CAYNNNNRTG 3 cut(s) 386, 596, 825
Sse9I AATT 5 cut(s) 307, 586, 684, 823, 1453
SsiI CCGC 2 cut(s) 339, 1067
SspMI CTAG 3 cut(s) 336, 426, 1368
SstI GAGCTC 2 cut(s) 433, 667
StyD4I CCNGG 2 cut(s) 315, 636
StyI CCWWGG 2 cut(s) 509, 1329
TaaI ACNGT 3 cut(s) 31, 189, 395
TaqI TCGA 2 cut(s) 489, 1016
TasI AATT 5 cut(s) 307, 586, 684, 823, 1453
TatI WGTACW 1 cut(s) 255
TauI GCSGC 1 cut(s) 342
TfiI GAWTC 3 cut(s) 1127, 1150, 1170
Tru1I TTAA 7 cut(s) 165, 182, 204, 476, 714, 807, 1436
Tru9I TTAA 7 cut(s) 165, 182, 204, 476, 714, 807, 1436
TseFI GTSAC 2 cut(s) 193, 494
TseI GCWGC 2 cut(s) 644, 994
Tsp45I GTSAC 2 cut(s) 193, 494
TspDTI ATGAA 8 cut(s) 47, 75, 474, 580, 586, 696, 992, 1140
TspGWI ACGGA 2 cut(s) 181, 825
Van91I CCANNNNNTGG 1 cut(s) 957
VpaK11BI GGWCC 4 cut(s) 85, 536, 633, 1364
VspI ATTAAT 1 cut(s) 182
XagI CCTNNNNNAGG 1 cut(s) 1371
XapI RAATTY 1 cut(s) 586
XceI RCATGY 3 cut(s) 389, 968, 1189
XcmI CCANNNNNNNNNTGG 2 cut(s) 507, 1293
XmnI GAANNNNTTC 2 cut(s) 310, 1037
XspI CTAG 3 cut(s) 336, 426, 1368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.