Rmu_sc0005500.1_g000007

DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005500.1
OG0023114
Physical Location & Seq
Reverse (-)
45071 .. 48173
3103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005500.1_g000007.1.cds

Sequence Viewer

Length: 669 bp
atgccggcgacctgctgtatctcctccctttgcctgaatctacgtcgccacctctcagacgactctctctctctctctctctctccccccgtcgctccactcttagtcaacgacgttctcatcggcgaagaagttaccggtagaaacggcgaccgaagcctccaaatccagatcgagactcctcgccgacaacatcaattatcttctgcaatccgactctctccagacgcagtctctctttctctcatccttctcaacccgacgccttcgattccaatagacaaggctaagccttgtttccgaacccaaatactattttgggtcaacgtcatcatttgggattggagagcctggacgtctccggcgctggactcaaaccggtggcgtgagattttcagcaaattctggtgggcagcagccagtgaccggaatccggcgaaagttggccggattccagcggtaggcacgtatgatgatgaagaggctgcagccagagcttatgatcttgctaccttgaaatattggggccctggcattccgattaatttccctactagctcatctcagccgtctgctcctcctctggtgtcctttaacggcgattctcctccacggtggccctgcaagatggcaaagattgaagtattcggagccgaccggaaaacgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

222

Amino Acids

24.66

Weight (kDa)

8.65

Isoelectric Point (pI)

57.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023114)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005500.1_g000007
rosa_samantha Rh3BG340300 Rh5CG315500 Rh7AG304000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 359
Acc36I ACCTGC 1 cut(s) 20
AciI CCGC 1 cut(s) 458
AcoI YGGCCR 1 cut(s) 445
AcsI RAATTY 1 cut(s) 401
AcyI GRCGYC 2 cut(s) 263, 356
AfiI CCNNNNNNNGG 3 cut(s) 426, 433, 461
AgeI ACCGGT 2 cut(s) 137, 378
AgsI TTSAA 2 cut(s) 517, 641
AjnI CCWGG 2 cut(s) 350, 529
AluBI AGCT 2 cut(s) 497, 558
AluI AGCT 2 cut(s) 497, 558
Alw26I GTCTC 3 cut(s) 170, 238, 363
AoxI GGCC 3 cut(s) 445, 526, 617
ApaI GGGCCC 1 cut(s) 530
ApeKI GCWGC 4 cut(s) 413, 416, 485, 488
ApoI RAATTY 1 cut(s) 401
AseI ATTAAT 1 cut(s) 543
AsiGI ACCGGT 2 cut(s) 137, 378
AspLEI GCGC 1 cut(s) 367
AspS9I GGNCC 3 cut(s) 526, 527, 618
BaeGI GKGCMC 1 cut(s) 530
BanII GRGCYC 1 cut(s) 530
BbvI GCAGC 4 cut(s) 425, 428, 472, 500
BccI CCATC 1 cut(s) 622
BceAI ACGGC 3 cut(s) 163, 553, 613
BciT130I CCWGG 2 cut(s) 352, 531
BcoDI GTCTC 3 cut(s) 170, 238, 363
BfaI CTAG 1 cut(s) 555
BfmI CTRYAG 1 cut(s) 486
BfoI RGCGCY 1 cut(s) 368
BfuAI ACCTGC 1 cut(s) 20
BisI GCNGC 4 cut(s) 414, 417, 486, 489
BlpI GCTNAGC 1 cut(s) 288
BlsI GCNGC 4 cut(s) 415, 418, 487, 490
Bme1390I CCNGG 2 cut(s) 352, 531
BmgT120I GGNCC 3 cut(s) 526, 527, 618
BmiI GGNNCC 3 cut(s) 527, 528, 652
BmrFI CCNGG 2 cut(s) 352, 531
BpmI CTGGAG 1 cut(s) 207
Bpu1102I GCTNAGC 1 cut(s) 288
BsaAI YACGTR 1 cut(s) 468
BsaHI GRCGYC 2 cut(s) 263, 356
BsaJI CCNNGG 2 cut(s) 529, 611
BsaWI WCCGGW 4 cut(s) 137, 378, 426, 657
Bsc4I CCNNNNNNNGG 3 cut(s) 426, 433, 461
Bse118I RCCGGY 3 cut(s) 4, 137, 378
Bse1I ACTGG 1 cut(s) 420
BseBI CCWGG 2 cut(s) 352, 531
BseDI CCNNGG 2 cut(s) 529, 611
BseGI GGATG 1 cut(s) 246
BseLI CCNNNNNNNGG 3 cut(s) 426, 433, 461
BseMII CTCAG 2 cut(s) 69, 578
BseNI ACTGG 1 cut(s) 420
BseRI GAGGAG 5 cut(s) 13, 171, 567, 570, 597
BseSI GKGCMC 1 cut(s) 530
BseXI GCAGC 4 cut(s) 425, 428, 472, 500
Bsh1285I CGRYCG 2 cut(s) 154, 658
BshFI GGCC 3 cut(s) 447, 528, 619
BshTI ACCGGT 2 cut(s) 137, 378
BsiEI CGRYCG 2 cut(s) 154, 658
BsiSI CCGG 8 cut(s) 5, 138, 362, 379, 427, 434, 448, 658
BslI CCNNNNNNNGG 3 cut(s) 426, 433, 461
BsmAI GTCTC 3 cut(s) 170, 238, 363
BsmBI CGTCTC 1 cut(s) 363
BsmI GAATGC 1 cut(s) 534
BsnI GGCC 3 cut(s) 447, 528, 619
Bsp120I GGGCCC 1 cut(s) 526
Bsp1286I GDGCHC 1 cut(s) 530
Bsp143I GATC 2 cut(s) 171, 502
Bsp1720I GCTNAGC 1 cut(s) 288
BspACI CCGC 1 cut(s) 458
BspANI GGCC 3 cut(s) 447, 528, 619
BspCNI CTCAG 2 cut(s) 68, 577
BspLI GGNNCC 3 cut(s) 527, 528, 652
BspMAI CTGCAG 1 cut(s) 490
BspMI ACCTGC 1 cut(s) 20
BsrFI RCCGGY 3 cut(s) 4, 137, 378
BsrI ACTGG 1 cut(s) 420
BssAI RCCGGY 3 cut(s) 4, 137, 378
BssECI CCNNGG 2 cut(s) 529, 611
BssMI GATC 2 cut(s) 171, 502
BssNI GRCGYC 2 cut(s) 263, 356
Bst2UI CCWGG 2 cut(s) 352, 531
Bst4CI ACNGT 1 cut(s) 615
Bst6I CTCTTC 1 cut(s) 474
BstACI GRCGYC 2 cut(s) 263, 356
BstBAI YACGTR 1 cut(s) 468
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 4 cut(s) 55, 103, 288, 564
BstDSI CCRYGG 1 cut(s) 611
BstF5I GGATG 1 cut(s) 246
BstH2I RGCGCY 1 cut(s) 368
BstHHI GCGC 1 cut(s) 367
BstKTI GATC 2 cut(s) 174, 505
BstMAI GTCTC 3 cut(s) 170, 238, 363
BstMBI GATC 2 cut(s) 171, 502
BstMCI CGRYCG 2 cut(s) 154, 658
BstMWI GCNNNNNNNGC 2 cut(s) 156, 494
BstNI CCWGG 2 cut(s) 352, 531
BstSCI CCNGG 2 cut(s) 350, 529
BstSFI CTRYAG 1 cut(s) 486
BstSLI GKGCMC 1 cut(s) 530
BstV1I GCAGC 4 cut(s) 425, 428, 472, 500
BsuRI GGCC 3 cut(s) 447, 528, 619
BtgI CCRYGG 1 cut(s) 611
BtsCI GGATG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 427
BveI ACCTGC 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 367
Cfr10I RCCGGY 3 cut(s) 4, 137, 378
Cfr13I GGNCC 3 cut(s) 526, 527, 618
CseI GACGC 2 cut(s) 236, 271
CspAI ACCGGT 2 cut(s) 137, 378
DdeI CTNAG 4 cut(s) 55, 103, 288, 564
DpnI GATC 2 cut(s) 173, 504
DpnII GATC 2 cut(s) 171, 502
EaeI YGGCCR 1 cut(s) 445
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Eco24I GRGCYC 1 cut(s) 530
EcoO109I RGGNCCY 2 cut(s) 526, 527
EcoRII CCWGG 2 cut(s) 350, 529
EcoT38I GRGCYC 1 cut(s) 530
Esp3I CGTCTC 1 cut(s) 363
FaiI YATR 2 cut(s) 471, 501
Fnu4HI GCNGC 4 cut(s) 414, 417, 486, 489
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 1 cut(s) 530
Fsp4HI GCNGC 4 cut(s) 414, 417, 486, 489
FspBI CTAG 1 cut(s) 555
GlaI GCGC 1 cut(s) 366
GluI GCNGC 4 cut(s) 414, 417, 486, 489
GsuI CTGGAG 1 cut(s) 207
HaeII RGCGCY 1 cut(s) 368
HaeIII GGCC 3 cut(s) 447, 528, 619
HapII CCGG 8 cut(s) 5, 138, 362, 379, 427, 434, 448, 658
HgaI GACGC 2 cut(s) 236, 271
HhaI GCGC 1 cut(s) 367
Hin1I GRCGYC 2 cut(s) 263, 356
Hin6I GCGC 1 cut(s) 365
HinP1I GCGC 1 cut(s) 365
HincII GTYRAC 2 cut(s) 109, 325
HindII GTYRAC 2 cut(s) 109, 325
HinfI GANTC 9 cut(s) 37, 62, 178, 216, 271, 371, 430, 451, 602
HpaII CCGG 8 cut(s) 5, 138, 362, 379, 427, 434, 448, 658
Hpy166II GTNNAC 2 cut(s) 109, 325
Hpy188I TCNGA 5 cut(s) 58, 215, 302, 540, 650
Hpy188III TCNNGA 3 cut(s) 169, 175, 224
Hpy8I GTNNAC 2 cut(s) 109, 325
Hpy99I CGWCG 4 cut(s) 48, 95, 116, 265
HpyAV CCTTC 2 cut(s) 260, 276
HpyCH4III ACNGT 1 cut(s) 615
HpyCH4IV ACGT 6 cut(s) 43, 114, 327, 356, 467, 665
HpyCH4V TGCA 3 cut(s) 209, 488, 624
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 494
HpyF3I CTNAG 4 cut(s) 55, 103, 288, 564
HpySE526I ACGT 6 cut(s) 43, 114, 327, 356, 467, 665
Hsp92I GRCGYC 2 cut(s) 263, 356
HspAI GCGC 1 cut(s) 365
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 2 cut(s) 171, 502
LmnI GCTCC 3 cut(s) 100, 580, 650
Lsp1109I GCAGC 4 cut(s) 425, 428, 472, 500
MaeI CTAG 1 cut(s) 555
MaeII ACGT 6 cut(s) 43, 114, 327, 356, 467, 665
MaeIII GTNAC 2 cut(s) 133, 422
MalI GATC 2 cut(s) 173, 504
MboI GATC 2 cut(s) 171, 502
MboII GAAGA 3 cut(s) 140, 195, 491
MhlI GDGCHC 1 cut(s) 530
MluCI AATT 3 cut(s) 197, 401, 544
MlyI GAGTC 4 cut(s) 56, 172, 210, 365
MmeI TCCRAC 1 cut(s) 238
MnlI CCTC 8 cut(s) 34, 62, 170, 192, 475, 588, 591, 618
MroNI GCCGGC 1 cut(s) 4
MseI TTAA 2 cut(s) 543, 594
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 8 cut(s) 5, 138, 362, 379, 427, 434, 448, 658
MspR9I CCNGG 2 cut(s) 352, 531
Mva1269I GAATGC 1 cut(s) 534
MvaI CCWGG 2 cut(s) 352, 531
MwoI GCNNNNNNNGC 2 cut(s) 156, 494
NaeI GCCGGC 1 cut(s) 6
NdeII GATC 2 cut(s) 171, 502
NgoMIV GCCGGC 1 cut(s) 4
NlaIV GGNNCC 3 cut(s) 527, 528, 652
NmuCI GTSAC 1 cut(s) 422
PctI GAATGC 1 cut(s) 534
PdiI GCCGGC 1 cut(s) 6
PfeI GAWTC 5 cut(s) 37, 271, 430, 451, 602
PflFI GACNNNGTC 1 cut(s) 230
PinAI ACCGGT 2 cut(s) 137, 378
PkrI GCNGC 4 cut(s) 415, 418, 487, 490
PleI GAGTC 4 cut(s) 56, 172, 210, 365
PpsI GAGTC 4 cut(s) 56, 172, 210, 365
Ppu21I YACGTR 1 cut(s) 468
PshBI ATTAAT 1 cut(s) 543
Psp6I CCWGG 2 cut(s) 350, 529
PspGI CCWGG 2 cut(s) 350, 529
PspN4I GGNNCC 3 cut(s) 527, 528, 652
PspOMI GGGCCC 1 cut(s) 526
PspPI GGNCC 3 cut(s) 526, 527, 618
PstI CTGCAG 1 cut(s) 490
PsyI GACNNNGTC 1 cut(s) 230
SaqAI TTAA 2 cut(s) 543, 594
SatI GCNGC 4 cut(s) 414, 417, 486, 489
Sau3AI GATC 2 cut(s) 171, 502
Sau96I GGNCC 3 cut(s) 526, 527, 618
SchI GAGTC 4 cut(s) 56, 172, 210, 365
ScrFI CCNGG 2 cut(s) 352, 531
SduI GDGCHC 1 cut(s) 530
SfcI CTRYAG 1 cut(s) 486
Sse9I AATT 3 cut(s) 197, 401, 544
SsiI CCGC 1 cut(s) 458
SspI AATATT 1 cut(s) 521
SspMI CTAG 1 cut(s) 555
StyD4I CCNGG 2 cut(s) 350, 529
TaaI ACNGT 1 cut(s) 615
TaiI ACGT 6 cut(s) 46, 117, 330, 359, 470, 668
TaqI TCGA 2 cut(s) 174, 269
TaqII GACCGA 1 cut(s) 168
TasI AATT 3 cut(s) 197, 401, 544
TfiI GAWTC 5 cut(s) 37, 271, 430, 451, 602
Tru1I TTAA 2 cut(s) 543, 594
Tru9I TTAA 2 cut(s) 543, 594
TscAI CASTG 1 cut(s) 427
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 4 cut(s) 413, 416, 485, 488
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 1 cut(s) 492
TspRI CASTG 1 cut(s) 427
Tth111I GACNNNGTC 1 cut(s) 230
VspI ATTAAT 1 cut(s) 543
XapI RAATTY 1 cut(s) 401
XspI CTAG 1 cut(s) 555
ZraI GACGTC 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.