Rh7AG304000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0023114
Physical Location & Seq
Forward (+)
33681946 .. 33694141
12196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG304000.1

Sequence Viewer

Length: 465 bp
ATGGGCCACTCCACCCAAAACGACGCCGCACTCCTCTCCAACCTCGACATTGGACCCCACTCCACCCAAAACCAGATCGAGACTCCGCGCCGGCGACATCAACGTTCTTTTGCAACCCGACTCTCTCCAAATGCCACCTCTCTCTCTGTCTATCATCTTTCTCAACCCGACGCCTCCAATTCTGATCGACAAGGCCCAACCTCGATTCTGGACCCGAAGACGATTTTGGTGATTGACAACAGAGGAAGAGGATCCACATCGCCGGAAGATGATTTTGGTGACCGGATGCCGATGCTCGAGAACTCTGTCCTCGATTCGTCATCAGGGTCAACGTCATCATTTGGGATTGGAGAGCCCGGACGTCATTTGGGACGGTTGAGCGAGAGAGATCTGAGCTGGGATTGGGTTCTGAAGTGCTTATTAGGATTTGGGTGGAAACAAGGTAGTGAAGATGAGTACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.98

Weight (kDa)

5.67

Isoelectric Point (pI)

49.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023114)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005500.1_g000007
rosa_samantha Rh3BG340300 Rh5CG315500 Rh7AG304000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 364
AccII CGCG 1 cut(s) 88
AciI CCGC 2 cut(s) 27, 86
AclI AACGTT 1 cut(s) 103
AclWI GGATC 2 cut(s) 246, 259
AcuI CTGAAG 1 cut(s) 431
AcyI GRCGYC 3 cut(s) 24, 171, 361
AfaI GTAC 1 cut(s) 458
AjuI GAANNNNNNNTTGG 4 cut(s) 209, 241, 258, 290
AluBI AGCT 1 cut(s) 396
AluI AGCT 1 cut(s) 396
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 2 cut(s) 246, 259
Ama87I CYCGRG 1 cut(s) 296
AoxI GGCC 2 cut(s) 4, 193
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 4 cut(s) 4, 53, 194, 211
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 2 cut(s) 241, 290
AvaI CYCGRG 1 cut(s) 296
AvaII GGWCC 2 cut(s) 53, 211
BamHI GGATCC 1 cut(s) 251
BanII GRGCYC 1 cut(s) 357
BbsI GAAGAC 1 cut(s) 224
BcnI CCSGG 1 cut(s) 357
BcoDI GTCTC 1 cut(s) 74
BglII AGATCT 1 cut(s) 388
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 357
Bme18I GGWCC 2 cut(s) 53, 211
BmeT110I CYCGRG 1 cut(s) 296
BmgT120I GGNCC 4 cut(s) 4, 53, 194, 211
BmiI GGNNCC 3 cut(s) 55, 213, 253
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 2 cut(s) 276, 282
BpiI GAAGAC 1 cut(s) 224
BpuMI CCSGG 1 cut(s) 357
BsaBI GATNNNNATC 1 cut(s) 256
BsaHI GRCGYC 3 cut(s) 24, 171, 361
BsaWI WCCGGW 1 cut(s) 282
Bse118I RCCGGY 1 cut(s) 90
Bse8I GATNNNNATC 1 cut(s) 256
BseGI GGATG 1 cut(s) 291
BseJI GATNNNNATC 1 cut(s) 256
BseMII CTCAG 1 cut(s) 383
BseRI GAGGAG 1 cut(s) 23
BseYI CCCAGC 1 cut(s) 396
Bsh1236I CGCG 1 cut(s) 88
BshFI GGCC 2 cut(s) 6, 195
BsiHKCI CYCGRG 1 cut(s) 296
BsiSI CCGG 4 cut(s) 91, 263, 283, 357
BslFI GGGAC 1 cut(s) 384
BsmAI GTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 384
BsnI GGCC 2 cut(s) 6, 195
BsoBI CYCGRG 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 357
Bsp143I GATC 4 cut(s) 75, 184, 251, 388
BspACI CCGC 2 cut(s) 27, 86
BspANI GGCC 2 cut(s) 6, 195
BspCNI CTCAG 1 cut(s) 384
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 3 cut(s) 55, 213, 253
BspPI GGATC 2 cut(s) 246, 259
BsrFI RCCGGY 1 cut(s) 90
BssAI RCCGGY 1 cut(s) 90
BssMI GATC 4 cut(s) 75, 184, 251, 388
BssNI GRCGYC 3 cut(s) 24, 171, 361
Bst4CI ACNGT 1 cut(s) 375
Bst6I CTCTTC 1 cut(s) 241
BstACI GRCGYC 3 cut(s) 24, 171, 361
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 1 cut(s) 392
BstEII GGTNACC 1 cut(s) 278
BstF5I GGATG 1 cut(s) 291
BstFNI CGCG 1 cut(s) 88
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 4 cut(s) 78, 187, 254, 391
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 4 cut(s) 75, 184, 251, 388
BstPI GGTNACC 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 355
BstUI CGCG 1 cut(s) 88
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 2 cut(s) 251, 388
BstYI RGATCY 2 cut(s) 251, 388
BsuRI GGCC 2 cut(s) 6, 195
BtgZI GCGATG 1 cut(s) 243
BtsCI GGATG 1 cut(s) 291
Cac8I GCNNGC 1 cut(s) 92
CfoI GCGC 1 cut(s) 90
Cfr10I RCCGGY 1 cut(s) 90
Cfr13I GGNCC 4 cut(s) 4, 53, 194, 211
CseI GACGC 2 cut(s) 32, 179
Csp6I GTAC 1 cut(s) 457
CviJI RGCY 4 cut(s) 6, 195, 355, 396
CviKI_1 RGCY 4 cut(s) 6, 195, 355, 396
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 1 cut(s) 392
DpnI GATC 4 cut(s) 77, 186, 253, 390
DpnII GATC 4 cut(s) 75, 184, 251, 388
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 357
Eco47I GGWCC 2 cut(s) 53, 211
Eco57I CTGAAG 1 cut(s) 431
Eco88I CYCGRG 1 cut(s) 296
Eco91I GGTNACC 1 cut(s) 278
EcoO65I GGTNACC 1 cut(s) 278
EcoT38I GRGCYC 1 cut(s) 357
FaqI GGGAC 1 cut(s) 384
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 1 cut(s) 298
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 1 cut(s) 27
GlaI GCGC 1 cut(s) 89
GluI GCNGC 1 cut(s) 27
GsaI CCCAGC 1 cut(s) 400
HaeIII GGCC 2 cut(s) 6, 195
HapII CCGG 4 cut(s) 91, 263, 283, 357
HgaI GACGC 2 cut(s) 32, 179
HhaI GCGC 1 cut(s) 90
Hin1I GRCGYC 3 cut(s) 24, 171, 361
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HinfI GANTC 4 cut(s) 82, 120, 205, 314
HpaII CCGG 4 cut(s) 91, 263, 283, 357
HphI GGTGA 2 cut(s) 241, 290
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 3 cut(s) 184, 393, 411
Hpy188III TCNNGA 3 cut(s) 79, 209, 298
Hpy8I GTNNAC 1 cut(s) 330
Hpy99I CGWCG 2 cut(s) 26, 173
HpyCH4III ACNGT 1 cut(s) 375
HpyCH4IV ACGT 3 cut(s) 103, 332, 361
HpyCH4V TGCA 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 392
HpySE526I ACGT 3 cut(s) 103, 332, 361
Hsp92I GRCGYC 3 cut(s) 24, 171, 361
HspAI GCGC 1 cut(s) 88
KroI GCCGGC 1 cut(s) 90
KroNI GCCGGC 1 cut(s) 92
Kzo9I GATC 4 cut(s) 75, 184, 251, 388
LpnPI CCDG 8 cut(s) 86, 104, 194, 276, 296, 309, 370, 382
LweI GCATC 2 cut(s) 276, 282
MaeII ACGT 3 cut(s) 103, 332, 361
MaeIII GTNAC 1 cut(s) 278
MalI GATC 4 cut(s) 77, 186, 253, 390
MboI GATC 4 cut(s) 75, 184, 251, 388
MboII GAAGA 4 cut(s) 229, 258, 278, 461
MflI RGATCY 2 cut(s) 251, 388
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 1 cut(s) 178
MlyI GAGTC 2 cut(s) 76, 114
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 8 cut(s) 44, 53, 148, 184, 211, 236, 242, 320
MreI CGCCGGCG 1 cut(s) 90
MroNI GCCGGC 1 cut(s) 90
MspI CCGG 4 cut(s) 91, 263, 283, 357
MspR9I CCNGG 1 cut(s) 357
MvnI CGCG 1 cut(s) 88
NaeI GCCGGC 1 cut(s) 92
NciI CCSGG 1 cut(s) 357
NdeII GATC 4 cut(s) 75, 184, 251, 388
NgoMIV GCCGGC 1 cut(s) 90
NlaIV GGNNCC 3 cut(s) 55, 213, 253
NmuCI GTSAC 1 cut(s) 278
PaeR7I CTCGAG 1 cut(s) 296
PdiI GCCGGC 1 cut(s) 92
PfeI GAWTC 2 cut(s) 205, 314
PkrI GCNGC 1 cut(s) 28
PleI GAGTC 2 cut(s) 76, 114
PpsI GAGTC 2 cut(s) 76, 114
Psp1406I AACGTT 1 cut(s) 103
PspEI GGTNACC 1 cut(s) 278
PspFI CCCAGC 1 cut(s) 396
PspN4I GGNNCC 3 cut(s) 55, 213, 253
PspPI GGNCC 4 cut(s) 4, 53, 194, 211
PsuI RGATCY 2 cut(s) 251, 388
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 4 cut(s) 75, 184, 251, 388
Sau96I GGNCC 4 cut(s) 4, 53, 194, 211
SchI GAGTC 2 cut(s) 76, 114
ScrFI CCNGG 1 cut(s) 357
SduI GDGCHC 1 cut(s) 357
SetI ASST 8 cut(s) 45, 106, 140, 203, 335, 364, 398, 445
SfaNI GCATC 2 cut(s) 276, 282
Sfr274I CTCGAG 1 cut(s) 296
SgrAI CRCCGGYG 1 cut(s) 90
SinI GGWCC 2 cut(s) 53, 211
SlaI CTCGAG 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 1 cut(s) 178
SsiI CCGC 2 cut(s) 27, 86
StyD4I CCNGG 1 cut(s) 355
TaaI ACNGT 1 cut(s) 375
TaiI ACGT 3 cut(s) 106, 335, 364
TaqI TCGA 6 cut(s) 45, 78, 187, 203, 297, 312
TasI AATT 1 cut(s) 178
TatI WGTACW 1 cut(s) 456
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 2 cut(s) 205, 314
TseFI GTSAC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 278
VpaK11BI GGWCC 2 cut(s) 53, 211
XhoI CTCGAG 1 cut(s) 296
ZraI GACGTC 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.