Rh5CG315500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0023114
Physical Location & Seq
Forward (+)
34936005 .. 34936292
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG315500.1

Sequence Viewer

Length: 288 bp
ATGGTGACCCGCCTCTTCTTCCTCTTCTCTTCCACAGCGATGGCCCCGCCCCATTCTCTGATGGGCCACTCCACCCAAAACAACGCCGCACTTCTCTCCAACCTCGGCATCGGACCCCACTCCACCCAAAACGAGATCGAGACTCCACGCCGGCGACATCAACGTTCTTCTACAACCCGACTCTCTCCAAACGCCATCTCTCTCTCTATCATCCTTCTCAACCCGACGCCTCCAATTCTGATCGACAAGGCCCAGCCTCGATTCCGGACCCGAAGACTATTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.73

Weight (kDa)

12.0

Isoelectric Point (pI)

57.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023114)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005500.1_g000007
rosa_samantha Rh3BG340300 Rh5CG315500 Rh7AG304000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 264
AciI CCGC 3 cut(s) 10, 47, 87
AclI AACGTT 1 cut(s) 163
AcyI GRCGYC 1 cut(s) 227
AjuI GAANNNNNNNTTGG 1 cut(s) 265
Alw26I GTCTC 1 cut(s) 134
Aor13HI TCCGGA 1 cut(s) 264
AoxI GGCC 3 cut(s) 42, 64, 249
AspS9I GGNCC 5 cut(s) 43, 64, 113, 250, 267
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 2 cut(s) 113, 267
BbsI GAAGAC 1 cut(s) 280
BccI CCATC 3 cut(s) 34, 55, 203
BcoDI GTCTC 1 cut(s) 134
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme18I GGWCC 2 cut(s) 113, 267
BmgT120I GGNCC 5 cut(s) 43, 64, 113, 250, 267
BmiI GGNNCC 3 cut(s) 45, 115, 269
BmsI GCATC 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 280
BsaHI GRCGYC 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 103
BsaWI WCCGGW 1 cut(s) 264
Bse118I RCCGGY 1 cut(s) 150
BseAI TCCGGA 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 1 cut(s) 210
BseYI CCCAGC 1 cut(s) 252
BshFI GGCC 3 cut(s) 44, 66, 251
BsiSI CCGG 2 cut(s) 151, 265
BsmAI GTCTC 1 cut(s) 134
BsnI GGCC 3 cut(s) 44, 66, 251
Bsp13I TCCGGA 1 cut(s) 264
Bsp143I GATC 2 cut(s) 135, 240
BspACI CCGC 3 cut(s) 10, 47, 87
BspANI GGCC 3 cut(s) 44, 66, 251
BspEI TCCGGA 1 cut(s) 264
BspLI GGNNCC 3 cut(s) 45, 115, 269
BsrFI RCCGGY 1 cut(s) 150
BssAI RCCGGY 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 2 cut(s) 135, 240
BssNI GRCGYC 1 cut(s) 227
Bst6I CTCTTC 3 cut(s) 20, 29, 34
BstACI GRCGYC 1 cut(s) 227
BstC8I GCNNGC 1 cut(s) 152
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 1 cut(s) 210
BstKTI GATC 2 cut(s) 138, 243
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 2 cut(s) 135, 240
BstPI GGTNACC 1 cut(s) 4
BstV2I GAAGAC 1 cut(s) 280
BstXI CCANNNNNNTGG 1 cut(s) 40
BsuRI GGCC 3 cut(s) 44, 66, 251
BtgZI GCGATG 1 cut(s) 53
BtsCI GGATG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 152
Cfr10I RCCGGY 1 cut(s) 150
Cfr13I GGNCC 5 cut(s) 43, 64, 113, 250, 267
CseI GACGC 1 cut(s) 235
CviJI RGCY 4 cut(s) 44, 66, 251, 256
CviKI_1 RGCY 4 cut(s) 44, 66, 251, 256
DpnI GATC 2 cut(s) 137, 242
DpnII GATC 2 cut(s) 135, 240
Eam1104I CTCTTC 3 cut(s) 20, 29, 34
EarI CTCTTC 3 cut(s) 20, 29, 34
Eco47I GGWCC 2 cut(s) 113, 267
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
FauI CCCGC 2 cut(s) 17, 54
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 87
GsaI CCCAGC 1 cut(s) 256
HaeIII GGCC 3 cut(s) 44, 66, 251
HapII CCGG 2 cut(s) 151, 265
HgaI GACGC 1 cut(s) 235
Hin1I GRCGYC 1 cut(s) 227
HinfI GANTC 3 cut(s) 142, 180, 261
HpaII CCGG 2 cut(s) 151, 265
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 3 cut(s) 60, 113, 240
Hpy188III TCNNGA 2 cut(s) 139, 265
Hpy99I CGWCG 1 cut(s) 229
HpyAV CCTTC 1 cut(s) 224
HpyCH4IV ACGT 1 cut(s) 163
HpySE526I ACGT 1 cut(s) 163
Hsp92I GRCGYC 1 cut(s) 227
Kpn2I TCCGGA 1 cut(s) 264
KroI GCCGGC 1 cut(s) 150
KroNI GCCGGC 1 cut(s) 152
Kzo9I GATC 2 cut(s) 135, 240
LpnPI CCDG 3 cut(s) 164, 266, 278
LweI GCATC 1 cut(s) 117
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 4
MalI GATC 2 cut(s) 137, 242
MboI GATC 2 cut(s) 135, 240
MboII GAAGA 6 cut(s) 7, 10, 16, 21, 159, 285
MluCI AATT 1 cut(s) 234
MlyI GAGTC 2 cut(s) 136, 174
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 5 cut(s) 23, 32, 113, 240, 267
MreI CGCCGGCG 1 cut(s) 150
MroI TCCGGA 1 cut(s) 264
MroNI GCCGGC 1 cut(s) 150
MslI CAYNNNNRTG 1 cut(s) 38
MspI CCGG 2 cut(s) 151, 265
NaeI GCCGGC 1 cut(s) 152
NdeII GATC 2 cut(s) 135, 240
NgoMIV GCCGGC 1 cut(s) 150
NlaIV GGNNCC 3 cut(s) 45, 115, 269
NmeAIII GCCGAG 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 4
PdiI GCCGGC 1 cut(s) 152
PfeI GAWTC 1 cut(s) 261
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 2 cut(s) 136, 174
PpsI GAGTC 2 cut(s) 136, 174
Psp1406I AACGTT 1 cut(s) 163
PspEI GGTNACC 1 cut(s) 4
PspFI CCCAGC 1 cut(s) 252
PspN4I GGNNCC 3 cut(s) 45, 115, 269
PspPI GGNCC 5 cut(s) 43, 64, 113, 250, 267
RseI CAYNNNNRTG 1 cut(s) 38
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 2 cut(s) 135, 240
Sau96I GGNCC 5 cut(s) 43, 64, 113, 250, 267
SchI GAGTC 2 cut(s) 136, 174
SetI ASST 2 cut(s) 105, 166
SfaNI GCATC 1 cut(s) 117
SgrAI CRCCGGYG 1 cut(s) 150
SinI GGWCC 2 cut(s) 113, 267
SmiMI CAYNNNNRTG 1 cut(s) 38
Sse9I AATT 1 cut(s) 234
SsiI CCGC 3 cut(s) 10, 47, 87
TaiI ACGT 1 cut(s) 166
TaqI TCGA 3 cut(s) 138, 243, 259
TasI AATT 1 cut(s) 234
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 1 cut(s) 261
TseFI GTSAC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 4
VpaK11BI GGWCC 2 cut(s) 113, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.